RLG00000024216

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000594
Physical Location & Seq
Reverse (-)
33172971 .. 33174085
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024216

Sequence Viewer

Length: 492 bp
ATGAACACCCAAGTACTCTCAGCCTCACCTTGGCCATATTCTTCTCAGGTCACATGCAACGGCAATGGCGCAGTCCCACCGGCAACTCTAGTCGAAATCAACATTGCAGCTGACGGCGGTCAGGACTTCTACGACGTCAGCCTGGTCGACGGCTTCAACTTGCCCATGTCCGTGGCCCCGCAGGGTGGAACCGGCGACTGCAAGCCCTCTTCATGCCCGGCCGAAGTGAACGCCGTCTGTCCTGCGGAGCTGCAAGTGAAGGCCGACGACGGGACCGTGATTGCCTGCAAGAGCGCTTGTGTGGCGTTCAACGAGCCAAAGTACTGTTGCACACCTCCCAATGACACTCCCGAAACATGTCCTCCCACAAACTACTCTCAGATCTTTGAGGAACAGTGCCCTCAGGCTTATAGCTACGCTTACGATGACAAGAACAGCACGTTTACATGCTTCGGTGGACCTAACTACGCCATTACATTCTGTCCGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

164

Amino Acids

17.18

Weight (kDa)

4.05

Isoelectric Point (pI)

60.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 15 - 162 4.8e-54 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 147
AciI CCGC 3 cut(s) 117, 179, 245
AcoI YGGCCR 2 cut(s) 32, 219
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 2 cut(s) 15, 323
AfeI AGCGCT 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 30, 185, 270
AflIII ACRYGT 1 cut(s) 356
AgsI TTSAA 2 cut(s) 157, 310
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 3 cut(s) 110, 250, 414
AluI AGCT 3 cut(s) 110, 250, 414
Aor51HI AGCGCT 1 cut(s) 295
AoxI GGCC 4 cut(s) 32, 174, 219, 261
ApeKI GCWGC 2 cut(s) 107, 250
AspLEI GCGC 2 cut(s) 71, 296
AspS9I GGNCC 3 cut(s) 175, 273, 458
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 18
AvaII GGWCC 2 cut(s) 273, 458
AxyI CCTNAGG 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 401
BalI TGGCCA 1 cut(s) 34
BbvI GCAGC 2 cut(s) 119, 237
BceAI ACGGC 4 cut(s) 76, 130, 166, 218
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 1 cut(s) 218
BfaI CTAG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 297
BglII AGATCT 1 cut(s) 381
BisI GCNGC 2 cut(s) 108, 251
BlsI GCNGC 2 cut(s) 109, 252
BmcAI AGTACT 2 cut(s) 15, 323
Bme1390I CCNGG 2 cut(s) 143, 218
Bme18I GGWCC 2 cut(s) 273, 458
BmgT120I GGNCC 3 cut(s) 175, 273, 458
BmiI GGNNCC 3 cut(s) 177, 190, 274
BmrFI CCNGG 2 cut(s) 143, 218
BoxI GACNNNNGTC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 29, 171
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 185, 270
Bse118I RCCGGY 2 cut(s) 79, 191
Bse21I CCTNAGG 1 cut(s) 402
Bse3DI GCAATG 2 cut(s) 70, 102
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 29, 171
BseLI CCNNNNNNNGG 3 cut(s) 30, 185, 270
BseMI GCAATG 2 cut(s) 70, 102
BseMII CTCAG 4 cut(s) 33, 59, 392, 416
BseSI GKGCMC 1 cut(s) 401
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 119, 237
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 4 cut(s) 34, 176, 221, 263
BsiEI CGRYCG 1 cut(s) 222
BsiSI CCGG 4 cut(s) 80, 192, 218, 485
BslFI GGGAC 2 cut(s) 59, 286
BslI CCNNNNNNNGG 3 cut(s) 30, 185, 270
BsmFI GGGAC 2 cut(s) 59, 286
BsnI GGCC 4 cut(s) 34, 176, 221, 263
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 1 cut(s) 381
BspACI CCGC 3 cut(s) 117, 179, 245
BspANI GGCC 4 cut(s) 34, 176, 221, 263
BspCNI CTCAG 4 cut(s) 32, 58, 391, 415
BspLI GGNNCC 3 cut(s) 177, 190, 274
BsrDI GCAATG 2 cut(s) 70, 102
BsrFI RCCGGY 2 cut(s) 79, 191
BssAI RCCGGY 2 cut(s) 79, 191
BssECI CCNNGG 2 cut(s) 29, 171
BssMI GATC 1 cut(s) 381
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 3 cut(s) 277, 326, 396
Bst6I CTCTTC 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 203, 286
BstDEI CTNAG 4 cut(s) 19, 45, 378, 402
BstDSI CCRYGG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 2 cut(s) 71, 296
BstKTI GATC 1 cut(s) 384
BstMBI GATC 1 cut(s) 381
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 3 cut(s) 57, 360, 450
BstPAI GACNNNNGTC 1 cut(s) 117
BstSCI CCNGG 2 cut(s) 141, 216
BstSLI GKGCMC 1 cut(s) 401
BstV1I GCAGC 2 cut(s) 119, 237
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 172
BstYI RGATCY 1 cut(s) 381
BstZI CGGCCG 1 cut(s) 219
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 4 cut(s) 34, 176, 221, 263
BtgI CCRYGG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 203, 286
CfoI GCGC 2 cut(s) 71, 296
Cfr10I RCCGGY 2 cut(s) 79, 191
Cfr13I GGNCC 3 cut(s) 175, 273, 458
Csp6I GTAC 2 cut(s) 14, 322
CviAII CATG 6 cut(s) 54, 166, 213, 357, 447, 489
CviQI GTAC 2 cut(s) 14, 322
DdeI CTNAG 4 cut(s) 19, 45, 378, 402
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
EaeI YGGCCR 2 cut(s) 32, 219
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
EclXI CGGCCG 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 273, 458
Eco47III AGCGCT 1 cut(s) 295
Eco52I CGGCCG 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 6 cut(s) 57, 169, 216, 360, 450, 492
FaiI YATR 8 cut(s) 37, 55, 167, 214, 358, 411, 448, 490
FaqI GGGAC 2 cut(s) 59, 286
FatI CATG 6 cut(s) 53, 165, 212, 356, 446, 488
FauI CCCGC 1 cut(s) 186
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 108, 251
Fsp4HI GCNGC 2 cut(s) 108, 251
FspBI CTAG 1 cut(s) 89
GlaI GCGC 2 cut(s) 70, 295
GluI GCNGC 2 cut(s) 108, 251
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 4 cut(s) 34, 176, 221, 263
HapII CCGG 4 cut(s) 80, 192, 218, 485
HhaI GCGC 2 cut(s) 71, 296
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 6 cut(s) 57, 169, 216, 360, 450, 492
Hin6I GCGC 2 cut(s) 69, 294
HinP1I GCGC 2 cut(s) 69, 294
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HpaII CCGG 4 cut(s) 80, 192, 218, 485
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 4 cut(s) 148, 229, 444, 458
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 2 cut(s) 122, 350
Hpy8I GTNNAC 4 cut(s) 148, 229, 444, 458
Hpy99I CGWCG 4 cut(s) 137, 152, 269, 272
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 3 cut(s) 277, 326, 396
HpyCH4IV ACGT 2 cut(s) 135, 440
HpyCH4V TGCA 6 cut(s) 57, 107, 201, 253, 288, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 4 cut(s) 19, 45, 378, 402
HpySE526I ACGT 2 cut(s) 135, 440
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 6 cut(s) 57, 169, 216, 360, 450, 492
HspAI GCGC 2 cut(s) 69, 294
Kzo9I GATC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 2 cut(s) 119, 237
MaeI CTAG 1 cut(s) 89
MaeII ACGT 2 cut(s) 135, 440
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 2 cut(s) 33, 201
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 401
MlsI TGGCCA 1 cut(s) 34
MluNI TGGCCA 1 cut(s) 34
MnlI CCTC 6 cut(s) 34, 217, 345, 372, 382, 411
Mox20I TGGCCA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 34
MslI CAYNNNNRTG 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 34
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 4 cut(s) 80, 192, 218, 485
MspR9I CCNGG 2 cut(s) 143, 218
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 1 cut(s) 218
NdeII GATC 1 cut(s) 381
NlaIII CATG 6 cut(s) 57, 169, 216, 360, 450, 492
NlaIV GGNNCC 3 cut(s) 177, 190, 274
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 3 cut(s) 57, 360, 450
PciI ACATGT 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PkrI GCNGC 2 cut(s) 109, 252
PscI ACATGT 1 cut(s) 356
PshAI GACNNNNGTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 177, 190, 274
PspPI GGNCC 3 cut(s) 175, 273, 458
PsuI RGATCY 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 15, 323
RsaNI GTAC 2 cut(s) 14, 322
RseI CAYNNNNRTG 1 cut(s) 170
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 2 cut(s) 108, 251
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 3 cut(s) 175, 273, 458
ScaI AGTACT 2 cut(s) 15, 323
ScrFI CCNGG 2 cut(s) 143, 218
SduI GDGCHC 1 cut(s) 401
SetI ASST 9 cut(s) 31, 51, 112, 138, 252, 337, 416, 443, 463
SinI GGWCC 2 cut(s) 273, 458
SmiMI CAYNNNNRTG 1 cut(s) 170
SsiI CCGC 3 cut(s) 117, 179, 245
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 141, 216
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 277, 326, 396
TaiI ACGT 2 cut(s) 138, 443
TaqI TCGA 2 cut(s) 93, 147
TatI WGTACW 2 cut(s) 13, 321
TscAI CASTG 1 cut(s) 401
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 107, 250
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 17, 201
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 273, 458
XceI RCATGY 3 cut(s) 57, 360, 450
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 89
ZraI GACGTC 1 cut(s) 136
ZrmI AGTACT 2 cut(s) 15, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.