Prupe.7G051500_v2.0.a1

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000594
Physical Location & Seq
Forward (+)
8952081 .. 8954533
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G051500.1

Sequence Viewer

Length: 735 bp
ATGAAGACCCCAGTAGTAGTCCTCAGCCTCAGCTTAACCATCCTTTCCTTCGGAGGTACATATGCGGCGACAAGTTTTTTCAAAAACAATTGCGCCAACATGGTCTGGCCAGGAACCCTAACCTCCGAGCAAAAACCTCAATTATCAACCACAGGGTTCCAGTTAGCATCCCAAGCTAGCTTCTTGCTAGACACTCCAGTGCCGTGGAATGGCCGCTTTTGGGCCCGAACTGGATGCTCCACGGACGTCTCTGGAAAGTTCGTCTGCGCCACCGCAGACTGTGCCTCTGGTCAGGTCACGTGCAATGGTAACGGTGCTATTCCGCCGGCAACTTTAGCGGAATTCAATATTCCAACAGGCGGAGGACAAGATTTCTACGACGTTAGTGTTGTTGATGGCTTCACCTTGCCCATGTCTGTGACTCCACAAGGCGGTACCGGAGACTGCAAGACAGCTAGTTGCCCGGCGAACGTGAATGCAGTTTGTCCGAGTGATCTGCAAAAGAAAGGGTCCGATGGGAGCGTGGTTGCCTGCTTGAGCGCATGTGTTAAATTGAATCAGCCACAGTACTGTTGCACTCCGCCTCAAAACACTCCAGAGACATGCCCACCGACAAATTACTCTCAGATATTCAGTCAAGCATGCCCCAACGCTTACAGCTATGCTTATGATGACAACAAGGGTACATTTACATGCAATGGTGGACATAACTACGCCATTACTTTCTGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

245

Amino Acids

25.57

Weight (kDa)

4.92

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
Acc65I GGTACC 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 434
AciI CCGC 8 cut(s) 65, 214, 273, 323, 338, 360, 432, 581
AcoI YGGCCR 2 cut(s) 107, 211
AcsI RAATTY 1 cut(s) 341
AcvI CACGTG 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 4 cut(s) 58, 436, 569, 685
AfiI CCNNNNNNNGG 4 cut(s) 209, 220, 359, 431
AgsI TTSAA 3 cut(s) 82, 346, 556
AjnI CCWGG 1 cut(s) 109
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 5 cut(s) 33, 176, 180, 455, 660
AluI AGCT 5 cut(s) 33, 176, 180, 455, 660
Alw26I GTCTC 3 cut(s) 253, 435, 593
AoxI GGCC 3 cut(s) 107, 211, 222
ApaI GGGCCC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 341
Asp718I GGTACC 1 cut(s) 434
AspLEI GCGC 3 cut(s) 95, 269, 542
AspS9I GGNCC 3 cut(s) 222, 223, 510
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 394
AsuNHI GCTAGC 1 cut(s) 176
AvaII GGWCC 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 109
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 226
BbrPI CACGTG 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 11
BbvCI CCTCAGC 2 cut(s) 23, 29
BccI CCATC 3 cut(s) 47, 389, 509
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 4 cut(s) 216, 250, 478, 512
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 464
BcoDI GTCTC 3 cut(s) 253, 435, 593
BfaI CTAG 3 cut(s) 177, 188, 456
BisI GCNGC 2 cut(s) 66, 214
BlsI GCNGC 2 cut(s) 67, 215
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 2 cut(s) 111, 464
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 3 cut(s) 222, 223, 510
BmiI GGNNCC 5 cut(s) 115, 158, 224, 436, 511
BmrFI CCNGG 2 cut(s) 111, 464
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 2 cut(s) 176, 224
BmtI GCTAGC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 2 cut(s) 180, 579
Bpu10I CCTNAGC 2 cut(s) 23, 29
BpuEI CTTGAG 1 cut(s) 556
BpuMI CCSGG 1 cut(s) 464
BsaAI YACGTR 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 203, 240
BsaWI WCCGGW 1 cut(s) 437
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 220, 359, 431
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 4 cut(s) 11, 160, 197, 235
Bse3DI GCAATG 2 cut(s) 310, 703
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 203, 240
BseGI GGATG 3 cut(s) 39, 167, 239
BseLI CCNNNNNNNGG 4 cut(s) 209, 220, 359, 431
BseMI GCAATG 2 cut(s) 310, 703
BseMII CTCAG 3 cut(s) 37, 43, 638
BseNI ACTGG 4 cut(s) 11, 160, 197, 235
BseSI GKGCMC 1 cut(s) 226
BshFI GGCC 3 cut(s) 109, 213, 224
BshNI GGYRCC 1 cut(s) 434
BsiSI CCGG 3 cut(s) 326, 438, 464
BslI CCNNNNNNNGG 4 cut(s) 209, 220, 359, 431
BsmAI GTCTC 3 cut(s) 253, 435, 593
BsmBI CGTCTC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 3 cut(s) 109, 213, 224
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 493
BspACI CCGC 8 cut(s) 65, 214, 273, 323, 338, 360, 432, 581
BspANI GGCC 3 cut(s) 109, 213, 224
BspCNI CTCAG 3 cut(s) 36, 42, 637
BspLI GGNNCC 5 cut(s) 115, 158, 224, 436, 511
BspOI GCTAGC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 434
BsrDI GCAATG 2 cut(s) 310, 703
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 4 cut(s) 11, 160, 197, 235
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 2 cut(s) 203, 240
BssMI GATC 1 cut(s) 493
BssNI GRCGYC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 4 cut(s) 281, 314, 567, 572
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 300
BstC8I GCNNGC 4 cut(s) 178, 327, 532, 643
BstDEI CTNAG 3 cut(s) 23, 29, 624
BstDSI CCRYGG 2 cut(s) 203, 240
BstF5I GGATG 3 cut(s) 39, 167, 239
BstHHI GCGC 3 cut(s) 95, 269, 542
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 3 cut(s) 253, 435, 593
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 3 cut(s) 173, 281, 335
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 4 cut(s) 546, 606, 645, 696
BstSCI CCNGG 2 cut(s) 109, 462
BstSLI GKGCMC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 204
BsuRI GGCC 3 cut(s) 109, 213, 224
BtgI CCRYGG 2 cut(s) 203, 240
BtsCI GGATG 3 cut(s) 39, 167, 239
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 4 cut(s) 178, 327, 532, 643
CfoI GCGC 3 cut(s) 95, 269, 542
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 3 cut(s) 222, 223, 510
Csp6I GTAC 4 cut(s) 57, 435, 568, 684
CviAII CATG 7 cut(s) 100, 412, 543, 603, 642, 693, 732
CviQI GTAC 4 cut(s) 57, 435, 568, 684
DdeI CTNAG 3 cut(s) 23, 29, 624
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
EaeI YGGCCR 2 cut(s) 107, 211
EciI GGCGGA 3 cut(s) 312, 375, 570
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 510
Eco72I CACGTG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 7 cut(s) 103, 415, 546, 606, 645, 696, 735
FatI CATG 7 cut(s) 99, 411, 542, 602, 641, 692, 731
FauNDI CATATG 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 66, 214
FokI GGATG 3 cut(s) 26, 154, 246
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 66, 214
FspBI CTAG 3 cut(s) 177, 188, 456
GlaI GCGC 3 cut(s) 94, 268, 541
GluI GCNGC 2 cut(s) 66, 214
GsuI CTGGAG 2 cut(s) 180, 579
HaeIII GGCC 3 cut(s) 109, 213, 224
HapII CCGG 3 cut(s) 326, 438, 464
HhaI GCGC 3 cut(s) 95, 269, 542
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 7 cut(s) 103, 415, 546, 606, 645, 696, 735
Hin6I GCGC 3 cut(s) 93, 267, 540
HinP1I GCGC 3 cut(s) 93, 267, 540
HinfI GANTC 2 cut(s) 421, 556
HpaII CCGG 3 cut(s) 326, 438, 464
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 704
Hpy188I TCNGA 5 cut(s) 53, 127, 489, 514, 627
Hpy188III TCNNGA 2 cut(s) 252, 596
Hpy8I GTNNAC 1 cut(s) 704
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 4 cut(s) 281, 314, 567, 572
HpyCH4IV ACGT 4 cut(s) 246, 299, 381, 471
HpyCH4V TGCA 6 cut(s) 303, 447, 479, 499, 576, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 281, 335
HpyF3I CTNAG 3 cut(s) 23, 29, 624
HpySE526I ACGT 4 cut(s) 246, 299, 381, 471
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 7 cut(s) 103, 415, 546, 606, 645, 696, 735
HspAI GCGC 3 cut(s) 93, 267, 540
KpnI GGTACC 1 cut(s) 438
KroI GCCGGC 1 cut(s) 325
KroNI GCCGGC 1 cut(s) 327
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 2 cut(s) 242, 519
LweI GCATC 2 cut(s) 176, 224
MaeI CTAG 3 cut(s) 177, 188, 456
MaeII ACGT 4 cut(s) 246, 299, 381, 471
MaeIII GTNAC 3 cut(s) 295, 308, 418
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 226
MlsI TGGCCA 1 cut(s) 109
MluCI AATT 5 cut(s) 88, 140, 341, 551, 616
MluNI TGGCCA 1 cut(s) 109
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 8 cut(s) 32, 38, 47, 133, 147, 295, 356, 594
Mox20I TGGCCA 1 cut(s) 109
MroNI GCCGGC 1 cut(s) 325
MscI TGGCCA 1 cut(s) 109
MseI TTAA 2 cut(s) 35, 549
MslI CAYNNNNRTG 3 cut(s) 197, 416, 691
Msp20I TGGCCA 1 cut(s) 109
MspI CCGG 3 cut(s) 326, 438, 464
MspR9I CCNGG 2 cut(s) 111, 464
MunI CAATTG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 173, 281, 335
NaeI GCCGGC 1 cut(s) 327
NciI CCSGG 1 cut(s) 464
NdeI CATATG 1 cut(s) 61
NdeII GATC 1 cut(s) 493
NgoMIV GCCGGC 1 cut(s) 325
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 7 cut(s) 103, 415, 546, 606, 645, 696, 735
NlaIV GGNNCC 5 cut(s) 115, 158, 224, 436, 511
NmuCI GTSAC 2 cut(s) 295, 418
NspI RCATGY 4 cut(s) 546, 606, 645, 696
OliI CACNNNNGTG 1 cut(s) 197
PaeI GCATGC 1 cut(s) 645
PctI GAATGC 1 cut(s) 481
PdiI GCCGGC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 556
PkrI GCNGC 2 cut(s) 67, 215
PleI GAGTC 1 cut(s) 415
PmaCI CACGTG 1 cut(s) 300
PmlI CACGTG 1 cut(s) 300
PpsI GAGTC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 109
PspCI CACGTG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 5 cut(s) 115, 158, 224, 436, 511
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 3 cut(s) 222, 223, 510
RsaI GTAC 4 cut(s) 58, 436, 569, 685
RsaNI GTAC 4 cut(s) 57, 435, 568, 684
RseI CAYNNNNRTG 3 cut(s) 197, 416, 691
SaqAI TTAA 2 cut(s) 35, 549
SatI GCNGC 2 cut(s) 66, 214
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 3 cut(s) 222, 223, 510
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 2 cut(s) 111, 464
SduI GDGCHC 1 cut(s) 226
SfaNI GCATC 2 cut(s) 176, 224
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 3 cut(s) 197, 416, 691
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
SphI GCATGC 1 cut(s) 645
Sse9I AATT 5 cut(s) 88, 140, 341, 551, 616
SsiI CCGC 8 cut(s) 65, 214, 273, 323, 338, 360, 432, 581
SspI AATATT 1 cut(s) 349
SspMI CTAG 3 cut(s) 177, 188, 456
StyD4I CCNGG 2 cut(s) 109, 462
TaaI ACNGT 4 cut(s) 281, 314, 567, 572
TaiI ACGT 4 cut(s) 249, 302, 384, 474
TasI AATT 5 cut(s) 88, 140, 341, 551, 616
TatI WGTACW 1 cut(s) 567
TauI GCSGC 2 cut(s) 68, 216
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 2 cut(s) 35, 549
Tru9I TTAA 2 cut(s) 35, 549
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 2 cut(s) 295, 418
Tsp45I GTSAC 2 cut(s) 295, 418
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 1 cut(s) 341
XceI RCATGY 4 cut(s) 546, 606, 645, 696
XspI CTAG 3 cut(s) 177, 188, 456
ZraI GACGTC 1 cut(s) 247
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.