Rh1AG279000

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000594
Physical Location & Seq
Forward (+)
50732463 .. 50733925
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG279000.1

Sequence Viewer

Length: 735 bp
ATGAAGATGAACACCCAAGTACTCCTCAGCCTCACCTTGGCCATATTCTTCGCAGGTGCACATGCAGCTACAATCACCTTCACCAACAACTGCCCCTACACCGTATGGCCAGGATCCCTCACCTCCGACCAACAACCCCAACTATCCACCACCGGCTTCGAGCTAGCACAGGGAGCCAAAAACGAGGTCACCACTCCCGTTCCATGGAAAGGACGCTTCTGGGCCCGAACCGGATGCTCCACCGCTGCCGACGGAAAGTTCTCCTGCGCCACAGCTGACTGCGCCTCCGGCCAGGTCACATGCAACGGCAACGGCGCAGTCCCACCGGCAACTCTAGTTGAAATCAACATCGTAGCTGACGGCGGTCAGGACTTCTACGACGTCAGCCTGGTCGATGGCTTCAACGTGCCCATGTCCGTGGCCCCTCAGGGTGGAACCGGCGACTGCCAGACCTCTACATGCCCGGCCGACGTGAACGCCGCCTGTCCGGCAGAGCTGCAACTGAAGGCCGCCGACGGGAGCGTGATCGCCTGCAAGAGCGCGTGTACGGCGTTCAACGAGCCACAGTACTGTTGCACACCTCCCAATGACACTCCCGAAACCTGTCCTCCTACAAACTACTCTCAGATCTTTGAGAACCAGTGCCCTCAGGCTTATAGCTACGCTTACGATGACAAGAACAGCTTGTTTACATGCTTCGGTGGACCTAACTACGCCATTACATTCTGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

244

Amino Acids

25.65

Weight (kDa)

4.2

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 244 1.3e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
AatII GACGTC 1 cut(s) 384
Acc36I ACCTGC 1 cut(s) 44
AccII CGCG 1 cut(s) 542
AciI CCGC 4 cut(s) 243, 363, 480, 510
AclWI GGATC 2 cut(s) 108, 121
AcoI YGGCCR 4 cut(s) 39, 107, 289, 465
AcuI CTGAAG 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 3 cut(s) 21, 547, 569
AfiI CCNNNNNNNGG 5 cut(s) 37, 204, 209, 431, 516
AgsI TTSAA 3 cut(s) 341, 403, 556
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 3 cut(s) 109, 291, 387
AluBI AGCT 7 cut(s) 68, 163, 275, 356, 496, 660, 684
AluI AGCT 7 cut(s) 68, 163, 275, 356, 496, 660, 684
Alw21I GWGCWC 1 cut(s) 61
Alw44I GTGCAC 1 cut(s) 57
AlwI GGATC 2 cut(s) 108, 121
AoxI GGCC 7 cut(s) 39, 107, 222, 289, 420, 465, 507
ApaI GGGCCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 65, 245, 496
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 4 cut(s) 269, 284, 317, 542
AspS9I GGNCC 4 cut(s) 222, 223, 421, 704
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 5 cut(s) 25, 67, 73, 112, 181
AsuNHI GCTAGC 1 cut(s) 163
AvaII GGWCC 1 cut(s) 704
AxyI CCTNAGG 2 cut(s) 426, 648
BaeGI GKGCMC 4 cut(s) 61, 226, 411, 647
BalI TGGCCA 2 cut(s) 41, 109
BamHI GGATCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 3 cut(s) 77, 232, 483
BccI CCATC 1 cut(s) 389
BceAI ACGGC 4 cut(s) 322, 328, 376, 564
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 3 cut(s) 111, 293, 389
BcnI CCSGG 1 cut(s) 464
BfaI CTAG 2 cut(s) 164, 335
BfuAI ACCTGC 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 488
BglII AGATCT 1 cut(s) 627
BisI GCNGC 5 cut(s) 66, 246, 480, 497, 510
BlsI GCNGC 5 cut(s) 67, 247, 481, 498, 511
BmcAI AGTACT 2 cut(s) 21, 569
Bme1390I CCNGG 4 cut(s) 111, 293, 389, 464
Bme18I GGWCC 1 cut(s) 704
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 4 cut(s) 222, 223, 421, 704
BmiI GGNNCC 5 cut(s) 115, 175, 224, 423, 436
BmrFI CCNGG 4 cut(s) 111, 293, 389, 464
BmsI GCATC 1 cut(s) 224
BmtI GCTAGC 1 cut(s) 167
BoxI GACNNNNGTC 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 36, 203, 417
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 592, 622
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 204, 209, 431, 516
Bse118I RCCGGY 3 cut(s) 152, 325, 437
Bse1I ACTGG 1 cut(s) 640
Bse21I CCTNAGG 2 cut(s) 426, 648
BseBI CCWGG 3 cut(s) 111, 293, 389
BseDI CCNNGG 3 cut(s) 36, 203, 417
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 5 cut(s) 37, 204, 209, 431, 516
BseMII CTCAG 4 cut(s) 40, 440, 638, 662
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 4 cut(s) 61, 226, 411, 647
BseX3I CGGCCG 1 cut(s) 465
BseXI GCAGC 3 cut(s) 77, 232, 483
Bsh1236I CGCG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 7 cut(s) 153, 231, 288, 326, 438, 464, 488
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 5 cut(s) 37, 204, 209, 431, 516
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 4 cut(s) 61, 226, 411, 647
Bsp143I GATC 3 cut(s) 113, 525, 627
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 4 cut(s) 243, 363, 480, 510
BspANI GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
BspCNI CTCAG 4 cut(s) 39, 439, 637, 661
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 5 cut(s) 115, 175, 224, 423, 436
BspMI ACCTGC 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 167
BspPI GGATC 2 cut(s) 108, 121
BsrFI RCCGGY 3 cut(s) 152, 325, 437
BsrI ACTGG 1 cut(s) 640
BssAI RCCGGY 3 cut(s) 152, 325, 437
BssECI CCNNGG 3 cut(s) 36, 203, 417
BssMI GATC 3 cut(s) 113, 525, 627
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 2 cut(s) 36, 203
Bst2UI CCWGG 3 cut(s) 111, 293, 389
Bst4CI ACNGT 3 cut(s) 103, 567, 572
BstACI GRCGYC 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 165, 532
BstDEI CTNAG 4 cut(s) 26, 426, 624, 648
BstDSI CCRYGG 2 cut(s) 203, 417
BstEII GGTNACC 1 cut(s) 187
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 4 cut(s) 269, 284, 317, 542
BstKTI GATC 3 cut(s) 116, 528, 630
BstMBI GATC 3 cut(s) 113, 525, 627
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 6 cut(s) 65, 173, 281, 288, 488, 548
BstNI CCWGG 3 cut(s) 111, 293, 389
BstNSI RCATGY 4 cut(s) 65, 303, 462, 696
BstPAI GACNNNNGTC 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 187
BstSCI CCNGG 4 cut(s) 109, 291, 387, 462
BstSLI GKGCMC 4 cut(s) 61, 226, 411, 647
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 3 cut(s) 77, 232, 483
BstX2I RGATCY 2 cut(s) 113, 627
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 2 cut(s) 113, 627
BstZI CGGCCG 1 cut(s) 465
Bsu36I CCTNAGG 2 cut(s) 426, 648
BsuRI GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
BtgI CCRYGG 2 cut(s) 203, 417
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 647
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 165, 532
CfoI GCGC 4 cut(s) 269, 284, 317, 542
Cfr10I RCCGGY 3 cut(s) 152, 325, 437
Cfr13I GGNCC 4 cut(s) 222, 223, 421, 704
CseI GACGC 1 cut(s) 222
Csp6I GTAC 3 cut(s) 20, 546, 568
CviAII CATG 7 cut(s) 62, 204, 300, 412, 459, 693, 732
CviQI GTAC 3 cut(s) 20, 546, 568
DdeI CTNAG 4 cut(s) 26, 426, 624, 648
DpnI GATC 3 cut(s) 115, 527, 629
DpnII GATC 3 cut(s) 113, 525, 627
EaeI YGGCCR 4 cut(s) 39, 107, 289, 465
EagI CGGCCG 1 cut(s) 465
EclXI CGGCCG 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 36, 203
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 704
Eco52I CGGCCG 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 524
Eco81I CCTNAGG 2 cut(s) 426, 648
Eco91I GGTNACC 1 cut(s) 187
EcoO65I GGTNACC 1 cut(s) 187
EcoRII CCWGG 3 cut(s) 109, 291, 387
EcoT14I CCWWGG 2 cut(s) 36, 203
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 36, 203
FaeI CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 735
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FaqI GGGAC 1 cut(s) 305
FatI CATG 7 cut(s) 61, 203, 299, 411, 458, 692, 731
Fnu4HI GCNGC 5 cut(s) 66, 246, 480, 497, 510
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 5 cut(s) 66, 246, 480, 497, 510
FspBI CTAG 2 cut(s) 164, 335
GlaI GCGC 4 cut(s) 268, 283, 316, 541
GluI GCNGC 5 cut(s) 66, 246, 480, 497, 510
HaeIII GGCC 7 cut(s) 41, 109, 224, 291, 422, 467, 509
HapII CCGG 7 cut(s) 153, 231, 288, 326, 438, 464, 488
HgaI GACGC 1 cut(s) 222
HhaI GCGC 4 cut(s) 269, 284, 317, 542
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 735
Hin6I GCGC 4 cut(s) 267, 282, 315, 540
HinP1I GCGC 4 cut(s) 267, 282, 315, 540
HpaII CCGG 7 cut(s) 153, 231, 288, 326, 438, 464, 488
HphI GGTGA 5 cut(s) 25, 67, 73, 112, 181
Hpy166II GTNNAC 5 cut(s) 59, 475, 546, 690, 704
Hpy188I TCNGA 2 cut(s) 127, 627
Hpy188III TCNNGA 2 cut(s) 368, 596
Hpy8I GTNNAC 5 cut(s) 59, 475, 546, 690, 704
Hpy99I CGWCG 4 cut(s) 254, 383, 473, 518
HpyAV CCTTC 2 cut(s) 88, 499
HpyCH4III ACNGT 3 cut(s) 103, 567, 572
HpyCH4IV ACGT 3 cut(s) 381, 405, 471
HpyCH4V TGCA 6 cut(s) 59, 65, 303, 499, 534, 576
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 173, 281, 288, 488, 548
HpyF3I CTNAG 4 cut(s) 26, 426, 624, 648
HpySE526I ACGT 3 cut(s) 381, 405, 471
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 735
HspAI GCGC 4 cut(s) 267, 282, 315, 540
Kzo9I GATC 3 cut(s) 113, 525, 627
LmnI GCTCC 3 cut(s) 173, 242, 519
Lsp1109I GCAGC 3 cut(s) 77, 232, 483
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 164, 335
MaeII ACGT 3 cut(s) 381, 405, 471
MaeIII GTNAC 2 cut(s) 187, 295
MalI GATC 3 cut(s) 115, 527, 629
MboI GATC 3 cut(s) 113, 525, 627
MboII GAAGA 2 cut(s) 16, 40
MflI RGATCY 2 cut(s) 113, 627
MhlI GDGCHC 4 cut(s) 61, 226, 411, 647
MlsI TGGCCA 2 cut(s) 41, 109
MluNI TGGCCA 2 cut(s) 41, 109
MmeI TCCRAC 1 cut(s) 150
Mox20I TGGCCA 2 cut(s) 41, 109
MscI TGGCCA 2 cut(s) 41, 109
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 2 cut(s) 41, 109
MspA1I CMGCKG 2 cut(s) 245, 275
MspI CCGG 7 cut(s) 153, 231, 288, 326, 438, 464, 488
MspR9I CCNGG 4 cut(s) 111, 293, 389, 464
MvaI CCWGG 3 cut(s) 111, 293, 389
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 6 cut(s) 65, 173, 281, 288, 488, 548
NciI CCSGG 1 cut(s) 464
NcoI CCATGG 1 cut(s) 203
NdeII GATC 3 cut(s) 113, 525, 627
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 7 cut(s) 65, 207, 303, 415, 462, 696, 735
NlaIV GGNNCC 5 cut(s) 115, 175, 224, 423, 436
NmuCI GTSAC 2 cut(s) 187, 295
NspI RCATGY 4 cut(s) 65, 303, 462, 696
PaqCI CACCTGC 1 cut(s) 44
PkrI GCNGC 5 cut(s) 67, 247, 481, 498, 511
PshAI GACNNNNGTC 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 109, 291, 387
PspEI GGTNACC 1 cut(s) 187
PspGI CCWGG 3 cut(s) 109, 291, 387
PspN4I GGNNCC 5 cut(s) 115, 175, 224, 423, 436
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 4 cut(s) 222, 223, 421, 704
PsuI RGATCY 2 cut(s) 113, 627
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 21, 547, 569
RsaNI GTAC 3 cut(s) 20, 546, 568
RseI CAYNNNNRTG 1 cut(s) 416
SatI GCNGC 5 cut(s) 66, 246, 480, 497, 510
Sau3AI GATC 3 cut(s) 113, 525, 627
Sau96I GGNCC 4 cut(s) 222, 223, 421, 704
ScaI AGTACT 2 cut(s) 21, 569
ScrFI CCNGG 4 cut(s) 111, 293, 389, 464
SduI GDGCHC 4 cut(s) 61, 226, 411, 647
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 1 cut(s) 704
SmiMI CAYNNNNRTG 1 cut(s) 416
SsiI CCGC 4 cut(s) 243, 363, 480, 510
SspMI CTAG 2 cut(s) 164, 335
StyD4I CCNGG 4 cut(s) 109, 291, 387, 462
StyI CCWWGG 2 cut(s) 36, 203
TaaI ACNGT 3 cut(s) 103, 567, 572
TaiI ACGT 3 cut(s) 384, 408, 474
TaqI TCGA 2 cut(s) 159, 393
TatI WGTACW 2 cut(s) 19, 567
TauI GCSGC 2 cut(s) 482, 512
TscAI CASTG 1 cut(s) 647
TseFI GTSAC 2 cut(s) 187, 295
TseI GCWGC 3 cut(s) 65, 245, 496
Tsp45I GTSAC 2 cut(s) 187, 295
TspDTI ATGAA 2 cut(s) 17, 23
TspGWI ACGGA 2 cut(s) 267, 406
TspRI CASTG 1 cut(s) 647
VneI GTGCAC 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 704
XceI RCATGY 4 cut(s) 65, 303, 462, 696
XspI CTAG 2 cut(s) 164, 335
ZraI GACGTC 1 cut(s) 382
ZrmI AGTACT 2 cut(s) 21, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.