Rh4DG050600

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000594
Physical Location & Seq
Reverse (-)
8085290 .. 8086178
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG050600.1

Sequence Viewer

Length: 735 bp
ATGAAATCTCAAGTTTCATTGCTCTCTCTTTTGGTGGTCTCCATTGTTTCCTCAGGGGCTCAGTCGGCTACATTCACTTTCACGAACAAATGCCCCTTCACAGTTTGGCCCGGAACCCTAACCGGCGGTGGCGGTGCACAACTATCCTCAACCGGGTTCGAGTTAGCATCCGGTGCCTCCTCAACTCTAGATGTCCCTGCCCCATGGTCCGGCCGCTTCTGGGGCCGGACTCAGTGCTCCACAGACTCATCGGGAAAGTTCACCTGCGCCACCGCAGACTGCGGCTCAGGTCAAGTCGCATGCAACGGTGCTGGTGCAATTCCACCGGCGTCGCTGGTGGAACTGACCCTAGCAGCGAACGGCGGCCAAGACTTCTATGATGTTAGTCTCGTTGATGGCTTCAACGTGCCTGTTCAACTGGTTCCACAAGGTGGCTCGGGCGGATGCAGCGCCACGAGCTGCGCGGCCAATGTCAATTCGGTTTGTCCCGCAGAGTTGGTTGTGAAGGGATCAGATGGCGGTGTGATTGCTTGTAAAAGTGCGTGTTTGGTTTTTAATCAGCCTCAGTACTGTTGCACCGGCGACCATGGTACTCCGCAAACCTGCCCTCCGACTGATTATTCGAAGATCTTCAAGAACCAGTGCCCCCAGGCTTATAGTTATGCTTATGATGATAAGTCTAGCATTTTCACATGTAACGGTGGAGCTAATTATGTGATTACTTTTTGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

244

Amino Acids

24.85

Weight (kDa)

4.72

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 244 5.6e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000594)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g04210 FvH4_5g06220 FvH4_6g05880 FvH4_6g16950 FvH4_6g16950 FvH4_6g24670
malus_domestica MD04G1018400.v1.1 MD09G1256000.v1.1 MD09G1256300.v1.1 MD10G1201100.v1.1 MD16G1224000.v1.1 MD17G1249400.v1.1 MD17G1249600.v1.1 MD17G1250000.v1.1
prunus_persica Prupe.1G045400_v2.0.a1 Prupe.3G143900_v2.0.a1 Prupe.3G144000_v2.0.a1 Prupe.3G144100_v2.0.a1 Prupe.3G148300_v2.0.a1 Prupe.4G141100_v2.0.a1 Prupe.7G051100_v2.0.a1 Prupe.7G051200_v2.0.a1 Prupe.7G051500_v2.0.a1 Prupe.7G051500_v2.0.a1
pyrus_communis pycom04g01470 pycom09g13920 pycom09g17210 pycom09g17220 pycom10g17230 pycom17g25380
rosa_chinensis RchiOBHm_Chr1g0358711 RchiOBHm_Chr3g0470981 RchiOBHm_Chr3g0484051 RchiOBHm_Chr3g0484161 RchiOBHm_Chr3g0484171 RchiOBHm_Chr3g0484231
rosa_laevigata RLG00000009673 RLG00000023239 RLG00000023242 RLG00000024216 RLG00000024224 RLG00000027927
rosa_multiflora Rmu_co8155174.1_g000001 Rmu_co8316645.1_g000001 Rmu_co8355789.1_g000001 Rmu_sc0000839.1_g000011 Rmu_sc0002956.1_g000002 Rmu_sc0003477.1_g000008 Rmu_sc0005424.1_g000002 Rmu_sc0011148.1_g000008 Rmu_sc0011191.1_g000001
rosa_roxburghii Rroxscaffold_4G00297660 Rroxscaffold_5G00339700 Rroxscaffold_6G00397850 Rroxscaffold_6G00397880 Rroxscaffold_6G00410340
rosa_rugosa Rorug01G0264600 Rorug03G0114700 Rorug03G0210300 Rorug03G0362500.1
rosa_samantha Rh1AG279000 Rh1BG245600 Rh1DG273900 Rh3AG164200 Rh3AG259100 Rh3BG189700 Rh3BG295400 Rh3BG295700 Rh3CG179700 Rh3CG293100 Rh3DG186500 Rh3DG288800 Rh3DG289200 Rh4AG054300 Rh4BG052000 Rh4CG058900 Rh4DG050600
rosa_wichuraiana Rw1G024760 Rw3G015440 Rw3G023340 Rw4G004330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 2 cut(s) 272, 611
AccB1I GGYRCC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 431
AccII CGCG 1 cut(s) 464
AclWI GGATC 1 cut(s) 517
AcoI YGGCCR 3 cut(s) 211, 364, 465
AcyI GRCGYC 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 2 cut(s) 569, 592
AfiI CCNNNNNNNGG 4 cut(s) 153, 209, 220, 431
AflIII ACRYGT 1 cut(s) 692
AgsI TTSAA 3 cut(s) 403, 416, 634
AjnI CCWGG 1 cut(s) 648
AluBI AGCT 2 cut(s) 459, 707
AluI AGCT 2 cut(s) 459, 707
Alw21I GWGCWC 2 cut(s) 139, 239
Alw26I GTCTC 2 cut(s) 43, 392
Alw44I GTGCAC 1 cut(s) 135
AlwI GGATC 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 5 cut(s) 107, 211, 223, 364, 465
ApaLI GTGCAC 1 cut(s) 135
ApeKI GCWGC 3 cut(s) 353, 447, 459
ArsI GACNNNNNNTTYG 2 cut(s) 604, 636
Asp700I GAANNNNTTC 1 cut(s) 629
AspLEI GCGC 3 cut(s) 269, 452, 464
AspS9I GGNCC 3 cut(s) 108, 207, 223
AsuC2I CCSGG 2 cut(s) 111, 154
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 623
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 1 cut(s) 207
AxyI CCTNAGG 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 139, 647
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 61
BauI CACGAG 1 cut(s) 454
Bbv12I GWGCWC 2 cut(s) 139, 239
BbvI GCAGC 3 cut(s) 365, 446, 459
BccI CCATC 2 cut(s) 389, 509
BceAI ACGGC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 650
BcnI CCSGG 2 cut(s) 111, 154
BcoDI GTCTC 2 cut(s) 43, 392
BfaI CTAG 3 cut(s) 188, 350, 681
BfoI RGCGCY 1 cut(s) 453
BfuAI ACCTGC 2 cut(s) 272, 611
BglII AGATCT 1 cut(s) 627
BisI GCNGC 7 cut(s) 214, 283, 354, 364, 448, 460, 465
BlsI GCNGC 7 cut(s) 215, 284, 355, 365, 449, 461, 466
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 3 cut(s) 111, 154, 650
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 3 cut(s) 108, 207, 223
BmiI GGNNCC 4 cut(s) 115, 175, 224, 423
BmrFI CCNGG 3 cut(s) 111, 154, 650
BmsI GCATC 2 cut(s) 176, 434
Bpu10I CCTNAGC 1 cut(s) 286
Bpu14I TTCGAA 1 cut(s) 623
BpuMI CCSGG 2 cut(s) 111, 154
BsaHI GRCGYC 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 3 cut(s) 203, 586, 648
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 209, 220, 431
Bse118I RCCGGY 3 cut(s) 122, 325, 578
Bse1I ACTGG 2 cut(s) 423, 640
Bse21I CCTNAGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 3 cut(s) 203, 586, 648
BseGI GGATG 2 cut(s) 167, 449
BseLI CCNNNNNNNGG 4 cut(s) 153, 209, 220, 431
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 5 cut(s) 66, 74, 245, 300, 578
BseNI ACTGG 2 cut(s) 423, 640
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 2 cut(s) 139, 647
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 3 cut(s) 365, 446, 459
Bsh1236I CGCG 1 cut(s) 464
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 5 cut(s) 109, 213, 225, 366, 467
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 139, 239
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 8 cut(s) 111, 123, 153, 171, 210, 226, 326, 579
BslFI GGGAC 2 cut(s) 179, 471
BslI CCNNNNNNNGG 4 cut(s) 153, 209, 220, 431
BsmAI GTCTC 2 cut(s) 43, 392
BsmFI GGGAC 2 cut(s) 179, 471
BsnI GGCC 5 cut(s) 109, 213, 225, 366, 467
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 436
Bsp119I TTCGAA 1 cut(s) 623
Bsp1286I GDGCHC 4 cut(s) 61, 139, 239, 647
Bsp143I GATC 2 cut(s) 509, 627
Bsp19I CCATGG 2 cut(s) 203, 586
BspANI GGCC 5 cut(s) 109, 213, 225, 366, 467
BspCNI CTCAG 5 cut(s) 65, 73, 244, 299, 577
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 4 cut(s) 115, 175, 224, 423
BspMI ACCTGC 2 cut(s) 272, 611
BspPI GGATC 1 cut(s) 517
BspT104I TTCGAA 1 cut(s) 623
BspT107I GGYRCC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 17
BsrFI RCCGGY 3 cut(s) 122, 325, 578
BsrI ACTGG 2 cut(s) 423, 640
BssAI RCCGGY 3 cut(s) 122, 325, 578
BssECI CCNNGG 3 cut(s) 203, 586, 648
BssMI GATC 2 cut(s) 509, 627
BssNI GRCGYC 1 cut(s) 329
BssSI CACGAG 1 cut(s) 454
BssT1I CCWWGG 2 cut(s) 203, 586
Bst2BI CACGAG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 4 cut(s) 103, 308, 572, 701
BstACI GRCGYC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 5 cut(s) 52, 60, 231, 286, 564
BstDSI CCRYGG 2 cut(s) 203, 586
BstF5I GGATG 2 cut(s) 167, 449
BstFNI CGCG 1 cut(s) 464
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 3 cut(s) 269, 452, 464
BstKTI GATC 2 cut(s) 512, 630
BstMAI GTCTC 2 cut(s) 43, 392
BstMBI GATC 2 cut(s) 509, 627
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 5 cut(s) 65, 173, 222, 447, 456
BstNI CCWGG 1 cut(s) 650
BstNSI RCATGY 2 cut(s) 303, 696
BstSCI CCNGG 3 cut(s) 109, 152, 648
BstSLI GKGCMC 2 cut(s) 139, 647
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 3 cut(s) 365, 446, 459
BstX2I RGATCY 1 cut(s) 627
BstYI RGATCY 1 cut(s) 627
BstZI CGGCCG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 5 cut(s) 109, 213, 225, 366, 467
BtgI CCRYGG 2 cut(s) 203, 586
BtsCI GGATG 2 cut(s) 167, 449
BtsIMutI CAGTG 2 cut(s) 239, 647
BveI ACCTGC 2 cut(s) 272, 611
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 3 cut(s) 269, 452, 464
Cfr10I RCCGGY 3 cut(s) 122, 325, 578
Cfr13I GGNCC 3 cut(s) 108, 207, 223
CseI GACGC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 568, 591
CviAII CATG 4 cut(s) 204, 300, 587, 693
CviQI GTAC 2 cut(s) 568, 591
DdeI CTNAG 5 cut(s) 52, 60, 231, 286, 564
DpnI GATC 2 cut(s) 511, 629
DpnII GATC 2 cut(s) 509, 627
DraIII CACNNNGTG 1 cut(s) 431
EaeI YGGCCR 3 cut(s) 211, 364, 465
EagI CGGCCG 1 cut(s) 211
EciI GGCGGA 1 cut(s) 456
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 203, 586
Eco24I GRGCYC 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 2 cut(s) 203, 586
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 2 cut(s) 203, 586
FaeI CATG 4 cut(s) 207, 303, 590, 696
FaiI YATR 9 cut(s) 205, 301, 378, 588, 657, 663, 669, 694, 714
FaqI GGGAC 2 cut(s) 179, 471
FatI CATG 4 cut(s) 203, 299, 586, 692
FauI CCCGC 1 cut(s) 496
Fnu4HI GCNGC 7 cut(s) 214, 283, 354, 364, 448, 460, 465
FokI GGATG 2 cut(s) 154, 456
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 7 cut(s) 214, 283, 354, 364, 448, 460, 465
FspBI CTAG 3 cut(s) 188, 350, 681
GlaI GCGC 3 cut(s) 268, 451, 463
GluI GCNGC 7 cut(s) 214, 283, 354, 364, 448, 460, 465
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 5 cut(s) 109, 213, 225, 366, 467
HapII CCGG 8 cut(s) 111, 123, 153, 171, 210, 226, 326, 579
HgaI GACGC 1 cut(s) 318
HhaI GCGC 3 cut(s) 269, 452, 464
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 4 cut(s) 207, 303, 590, 696
Hin6I GCGC 3 cut(s) 267, 450, 462
HinP1I GCGC 3 cut(s) 267, 450, 462
HinfI GANTC 2 cut(s) 229, 245
HpaII CCGG 8 cut(s) 111, 123, 153, 171, 210, 226, 326, 579
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 137, 261
Hpy188I TCNGA 2 cut(s) 514, 612
Hpy188III TCNNGA 4 cut(s) 82, 188, 252, 634
Hpy8I GTNNAC 2 cut(s) 137, 261
Hpy99I CGWCG 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 106, 499
HpyCH4III ACNGT 4 cut(s) 103, 308, 572, 701
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 5 cut(s) 137, 303, 317, 447, 576
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 173, 222, 447, 456
HpyF3I CTNAG 5 cut(s) 52, 60, 231, 286, 564
HpySE526I ACGT 1 cut(s) 405
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 4 cut(s) 207, 303, 590, 696
HspAI GCGC 3 cut(s) 267, 450, 462
Kzo9I GATC 2 cut(s) 509, 627
LmnI GCTCC 2 cut(s) 242, 704
Lsp1109I GCAGC 3 cut(s) 365, 446, 459
LweI GCATC 2 cut(s) 176, 434
MaeI CTAG 3 cut(s) 188, 350, 681
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 695
MalI GATC 2 cut(s) 511, 629
MboI GATC 2 cut(s) 509, 627
MboII GAAGA 2 cut(s) 622, 637
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 4 cut(s) 61, 139, 239, 647
MluCI AATT 3 cut(s) 318, 475, 709
MlyI GAGTC 2 cut(s) 223, 239
MmeI TCCRAC 1 cut(s) 635
MnlI CCTC 6 cut(s) 61, 157, 187, 190, 573, 618
MroXI GAANNNNTTC 1 cut(s) 629
MseI TTAA 1 cut(s) 555
MspI CCGG 8 cut(s) 111, 123, 153, 171, 210, 226, 326, 579
MspR9I CCNGG 3 cut(s) 111, 154, 650
MvaI CCWGG 1 cut(s) 650
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 5 cut(s) 65, 173, 222, 447, 456
NciI CCSGG 2 cut(s) 111, 154
NcoI CCATGG 2 cut(s) 203, 586
NdeII GATC 2 cut(s) 509, 627
NlaIII CATG 4 cut(s) 207, 303, 590, 696
NlaIV GGNNCC 4 cut(s) 115, 175, 224, 423
NspI RCATGY 2 cut(s) 303, 696
NspV TTCGAA 1 cut(s) 623
PaeI GCATGC 1 cut(s) 303
PaqCI CACCTGC 1 cut(s) 272
PciI ACATGT 1 cut(s) 692
PdmI GAANNNNTTC 1 cut(s) 629
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 7 cut(s) 215, 284, 355, 365, 449, 461, 466
PleI GAGTC 2 cut(s) 223, 239
PpsI GAGTC 2 cut(s) 223, 239
PscI ACATGT 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 648
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 4 cut(s) 115, 175, 224, 423
PspPI GGNCC 3 cut(s) 108, 207, 223
PsuI RGATCY 1 cut(s) 627
RsaI GTAC 2 cut(s) 569, 592
RsaNI GTAC 2 cut(s) 568, 591
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 7 cut(s) 214, 283, 354, 364, 448, 460, 465
Sau3AI GATC 2 cut(s) 509, 627
Sau96I GGNCC 3 cut(s) 108, 207, 223
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 2 cut(s) 223, 239
ScrFI CCNGG 3 cut(s) 111, 154, 650
SduI GDGCHC 4 cut(s) 61, 139, 239, 647
SetI ASST 7 cut(s) 266, 292, 408, 433, 461, 605, 709
SfaNI GCATC 2 cut(s) 176, 434
SfuI TTCGAA 1 cut(s) 623
SgrAI CRCCGGYG 2 cut(s) 325, 578
SinI GGWCC 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SphI GCATGC 1 cut(s) 303
Sse9I AATT 3 cut(s) 318, 475, 709
SspMI CTAG 3 cut(s) 188, 350, 681
StyD4I CCNGG 3 cut(s) 109, 152, 648
StyI CCWWGG 2 cut(s) 203, 586
TaaI ACNGT 4 cut(s) 103, 308, 572, 701
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 159, 623
TasI AATT 3 cut(s) 318, 475, 709
TatI WGTACW 1 cut(s) 567
TauI GCSGC 4 cut(s) 216, 285, 366, 467
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 2 cut(s) 239, 647
TseI GCWGC 3 cut(s) 353, 447, 459
TspDTI ATGAA 2 cut(s) 6, 17
TspRI CASTG 2 cut(s) 239, 647
Van91I CCANNNNNTGG 1 cut(s) 431
VneI GTGCAC 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 2 cut(s) 303, 696
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 3 cut(s) 188, 350, 681
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.