FvH4_4g10250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001407
Physical Location & Seq
Forward (+)
13518255 .. 13519603
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10250.t2

Sequence Viewer

Length: 582 bp
ATGCATCGTACTTCTATTTCAAAGGAGGATGGGAACCGGGGGGAAGAAAATGTACCCCCGGGAATTGGATTGGGAGTTGAGAATTTAAATACAAAAGGAAGGAATAAGGGGGTGGATAAGGAAGCTGGAGGGGAAGCTATTCTTGGAAGAGGCTATGGTTTCTTGTCCTTTGAAAATGATGTGAGCAAGTATGGTATGATTGATAGTGGCAAGGAAAGGGCCATGTTGAGAAAGAACACTTCTAGGGATGAGGATGTCTCGGTCCTTAAACTAGATGGTGAGGCCATAAAGGCTACGGACCCATCTACGACCTATAACACCTATAGGGAGGTTCTTGATGAGATTAAACCCACTTCTCATGAGTTTGAGCCATCTATTTCTAGTGAAAAAGGGGGAAGAAATAAGGAGGAAGACCTACATGTTCATGATAGCTCTAGGGATAGGAGTGGTACGGTCTATTCATCACTAGGCGAGGCCTTGATGGCTAAGAACTCTAGTGGGACCGTCACTACCCTTAGGGGCACCACCGGGAATCTCACCTTTGATCCACCTCTTGATGTGAGTACCGTAGAATATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

20.99

Weight (kDa)

5.12

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 521
AclWI GGATC 1 cut(s) 539
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 4 cut(s) 10, 54, 451, 565
AfiI CCNNNNNNNGG 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 2 cut(s) 21, 173
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 3 cut(s) 125, 137, 432
AluI AGCT 3 cut(s) 125, 137, 432
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 539
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 3 cut(s) 219, 282, 474
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 138
AspS9I GGNCC 4 cut(s) 219, 262, 298, 501
AsuC2I CCSGG 4 cut(s) 38, 59, 60, 529
AsuHPI GGTGA 2 cut(s) 290, 529
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 3 cut(s) 262, 298, 501
AxyI CCTNAGG 1 cut(s) 515
BaeGI GKGCMC 1 cut(s) 524
BanI GGYRCC 1 cut(s) 521
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BbsI GAAGAC 1 cut(s) 417
BccI CCATC 5 cut(s) 23, 269, 310, 379, 475
BcnI CCSGG 4 cut(s) 38, 59, 60, 529
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 6 cut(s) 243, 272, 381, 435, 467, 495
BfmI CTRYAG 1 cut(s) 322
BglI GCCNNNNNGGC 2 cut(s) 290, 482
Bme1390I CCNGG 4 cut(s) 38, 59, 60, 529
Bme18I GGWCC 3 cut(s) 262, 298, 501
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 4 cut(s) 219, 262, 298, 501
BmiI GGNNCC 4 cut(s) 35, 300, 502, 523
BmrFI CCNGG 4 cut(s) 38, 59, 60, 529
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 417
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 1 cut(s) 147
BpuMI CCSGG 4 cut(s) 38, 59, 60, 529
BsaJI CCNNGG 3 cut(s) 37, 57, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse21I CCTNAGG 1 cut(s) 515
BseDI CCNNGG 3 cut(s) 37, 57, 58
BseGI GGATG 3 cut(s) 34, 253, 259
BseLI CCNNNNNNNGG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 524
BshFI GGCC 3 cut(s) 221, 284, 476
BshNI GGYRCC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 3 cut(s) 37, 59, 528
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 3 cut(s) 221, 284, 476
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 1 cut(s) 544
BspANI GGCC 3 cut(s) 221, 284, 476
BspHI TCATGA 2 cut(s) 358, 424
BspLI GGNNCC 4 cut(s) 35, 300, 502, 523
BspPI GGATC 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 521
BssECI CCNNGG 3 cut(s) 37, 57, 58
BssMI GATC 1 cut(s) 544
Bst4CI ACNGT 3 cut(s) 454, 505, 568
Bst6I CTCTTC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 486, 515
BstF5I GGATG 3 cut(s) 34, 253, 259
BstKTI GATC 1 cut(s) 547
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 2 cut(s) 290, 482
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 4 cut(s) 36, 57, 58, 527
BstSFI CTRYAG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 524
BstV2I GAAGAC 1 cut(s) 417
Bsu36I CCTNAGG 1 cut(s) 515
BsuRI GGCC 3 cut(s) 221, 284, 476
BtsCI GGATG 3 cut(s) 34, 253, 259
CciI TCATGA 2 cut(s) 358, 424
Cfr13I GGNCC 4 cut(s) 219, 262, 298, 501
Cfr9I CCCGGG 1 cut(s) 58
Csp6I GTAC 4 cut(s) 9, 53, 450, 564
CviAII CATG 4 cut(s) 223, 359, 419, 425
CviQI GTAC 4 cut(s) 9, 53, 450, 564
DdeI CTNAG 2 cut(s) 486, 515
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
DraI TTTAAA 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco147I AGGCCT 1 cut(s) 476
Eco47I GGWCC 3 cut(s) 262, 298, 501
Eco81I CCTNAGG 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 58
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 226, 362, 422, 428
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 1 cut(s) 514
FatI CATG 4 cut(s) 222, 358, 418, 424
FokI GGATG 3 cut(s) 41, 260, 266
FspBI CTAG 6 cut(s) 243, 272, 381, 435, 467, 495
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 3 cut(s) 221, 284, 476
HapII CCGG 3 cut(s) 37, 59, 528
Hin1II CATG 4 cut(s) 226, 362, 422, 428
HinfI GANTC 1 cut(s) 532
HpaII CCGG 3 cut(s) 37, 59, 528
HphI GGTGA 2 cut(s) 290, 529
Hpy188III TCNNGA 4 cut(s) 335, 359, 425, 554
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 3 cut(s) 454, 505, 568
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 482
HpyF3I CTNAG 2 cut(s) 486, 515
Hsp92II CATG 4 cut(s) 226, 362, 422, 428
Kzo9I GATC 1 cut(s) 544
LpnPI CCDG 4 cut(s) 50, 72, 111, 541
LweI GCATC 1 cut(s) 13
MaeI CTAG 6 cut(s) 243, 272, 381, 435, 467, 495
MaeIII GTNAC 1 cut(s) 505
MalI GATC 1 cut(s) 546
MboI GATC 1 cut(s) 544
MboII GAAGA 4 cut(s) 56, 159, 408, 422
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 2 cut(s) 63, 82
MnlI CCTC 9 cut(s) 19, 122, 143, 244, 274, 322, 400, 466, 561
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 3 cut(s) 86, 267, 345
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 3 cut(s) 37, 59, 528
MspR9I CCNGG 4 cut(s) 38, 59, 60, 529
MwoI GCNNNNNNNGC 2 cut(s) 290, 482
NciI CCSGG 4 cut(s) 38, 59, 60, 529
NdeII GATC 1 cut(s) 544
NlaIII CATG 4 cut(s) 226, 362, 422, 428
NlaIV GGNNCC 4 cut(s) 35, 300, 502, 523
NmuCI GTSAC 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 422
PagI TCATGA 2 cut(s) 358, 424
PceI AGGCCT 1 cut(s) 476
PciI ACATGT 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 532
PscI ACATGT 1 cut(s) 418
PspN4I GGNNCC 4 cut(s) 35, 300, 502, 523
PspPI GGNCC 4 cut(s) 219, 262, 298, 501
RsaI GTAC 4 cut(s) 10, 54, 451, 565
RsaNI GTAC 4 cut(s) 9, 53, 450, 564
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 3 cut(s) 86, 267, 345
Sau3AI GATC 1 cut(s) 544
Sau96I GGNCC 4 cut(s) 219, 262, 298, 501
ScrFI CCNGG 4 cut(s) 38, 59, 60, 529
SduI GDGCHC 1 cut(s) 524
SetI ASST 9 cut(s) 127, 139, 314, 323, 333, 417, 434, 542, 553
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 3 cut(s) 262, 298, 501
SmaI CCCGGG 1 cut(s) 60
SmiI ATTTAAAT 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 423
Sse9I AATT 2 cut(s) 63, 82
SseBI AGGCCT 1 cut(s) 476
SspI AATATT 1 cut(s) 575
SspMI CTAG 6 cut(s) 243, 272, 381, 435, 467, 495
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 4 cut(s) 36, 57, 58, 527
SwaI ATTTAAAT 1 cut(s) 87
TaaI ACNGT 3 cut(s) 454, 505, 568
TaqII GACCGA 1 cut(s) 250
TasI AATT 2 cut(s) 63, 82
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 3 cut(s) 86, 267, 345
Tru9I TTAA 3 cut(s) 86, 267, 345
TseFI GTSAC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 413, 450
TspGWI ACGGA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 58
VpaK11BI GGWCC 3 cut(s) 262, 298, 501
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 422
XmaI CCCGGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 6 cut(s) 243, 272, 381, 435, 467, 495
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.