Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008128.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Forward (+)

14986 .. 15714

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008128.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgccaattcaagctctaagtgaaccaaagaagcctaattttgaagaattgatgggtgagttcctcaaggttcaaacttctaccaatgtggagaccaagcaaaacatctcttcactagctcaagggtatcaaaatctacaacaaagcatgactaaattagagatacaaatgggccaaatagccgccaatttgagtgagagaccaatgggagctcttccttccacagcggagaagaactcgaagcatgtagccaaggctattactactcttagaagcgggaggacatacgacaataaggtatatttaccttcatcttctcaatcccctttgcatgtgaatgccccatttattgctccctctcctactatatcaccttctcttggtaattgtgtttccccttccacacatgttcccaactttacccctctacattctgatgatgattatgtgttggttgaggaatatgatagtgataatagtgatacgcatgatggtgccatgagggaagaaaatgtacctcgtggcaatttgaataatgattatttgcatgcttttaattcaaaggaggatgggaaccggggggaagaaaatgtacccccgggaattggagtgggtgatgtggctttgaatgcaaaaggaagaaataagggggtggataaggtagccggaggggaagaaaatgtaccctccggaggagtttctaatgttgacaagcctcacacaccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve

Protein Analysis

242

Amino Acids

26.06

Weight (kDa)

5.25

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccIII	TCCGGA	1 cut(s)	689
AciI	CCGC	3 cut(s)	183, 227, 276
AfaI	GTAC	3 cut(s)	516, 594, 684
AfiI	CCNNNNNNNGG	3 cut(s)	380, 605, 692
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	6 cut(s)	11, 44, 74, 532, 561, 628
AluBI	AGCT	3 cut(s)	14, 119, 212
AluI	AGCT	3 cut(s)	14, 119, 212
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	86, 193
Ama87I	CYCGRG	1 cut(s)	598
Aor13HI	TCCGGA	1 cut(s)	689
AoxI	GGCC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	3 cut(s)	578, 599, 600
AsuHPI	GGTGA	3 cut(s)	68, 363, 626
AvaI	CYCGRG	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	214
BarI	GAAGNNNNNNTAC	6 cut(s)	498, 530, 576, 608, 666, 698
BauI	CACGAG	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	214
BccI	CCATC	3 cut(s)	46, 485, 563
BcnI	CCSGG	3 cut(s)	578, 599, 600
BcoDI	GTCTC	2 cut(s)	86, 193
BfaI	CTAG	2 cut(s)	116, 727
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	3 cut(s)	578, 599, 600
BmeT110I	CYCGRG	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	496, 575
BmrFI	CCNGG	3 cut(s)	578, 599, 600
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpuEI	CTTGAG	2 cut(s)	50, 105
BpuMI	CCSGG	3 cut(s)	578, 599, 600
BsaI	GGTCTC	2 cut(s)	86, 193
BsaJI	CCNNGG	4 cut(s)	252, 577, 597, 598
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 605, 692
BseAI	TCCGGA	1 cut(s)	689
BseDI	CCNNGG	4 cut(s)	252, 577, 597, 598
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	3 cut(s)	380, 605, 692
BseRI	GAGGAG	1 cut(s)	708
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	4 cut(s)	577, 599, 666, 690
BslI	CCNNNNNNNGG	3 cut(s)	380, 605, 692
BsmAI	GTCTC	2 cut(s)	86, 193
BsmI	GAATGC	2 cut(s)	343, 634
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	2 cut(s)	86, 193
BsoBI	CYCGRG	1 cut(s)	598
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp13I	TCCGGA	1 cut(s)	689
BspACI	CCGC	3 cut(s)	183, 227, 276
BspANI	GGCC	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	689
BspLI	GGNNCC	2 cut(s)	496, 575
BspQI	GCTCTTC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	494
BspTNI	GGTCTC	2 cut(s)	86, 193
BssECI	CCNNGG	4 cut(s)	252, 577, 597, 598
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	519
Bst6I	CTCTTC	2 cut(s)	115, 219
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	2 cut(s)	17, 269
BstF5I	GGATG	1 cut(s)	574
BstMAI	GTCTC	2 cut(s)	86, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNSI	RCATGY	4 cut(s)	248, 335, 410, 551
BstSCI	CCNGG	3 cut(s)	576, 597, 598
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	172
Cfr9I	CCCGGG	1 cut(s)	598
Csp6I	GTAC	3 cut(s)	515, 593, 683
CviAII	CATG	7 cut(s)	148, 245, 332, 407, 488, 499, 548
CviQI	GTAC	3 cut(s)	515, 593, 683
DdeI	CTNAG	2 cut(s)	17, 269
Eam1104I	CTCTTC	2 cut(s)	115, 219
EarI	CTCTTC	2 cut(s)	115, 219
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	214
Eco31I	GGTCTC	2 cut(s)	86, 193
Eco53kI	GAGCTC	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	7 cut(s)	151, 248, 335, 410, 491, 502, 551
FatI	CATG	7 cut(s)	147, 244, 331, 406, 487, 498, 547
FauI	CCCGC	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	581
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	116, 727
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	4 cut(s)	577, 599, 666, 690
Hin1II	CATG	7 cut(s)	151, 248, 335, 410, 491, 502, 551
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HpaII	CCGG	4 cut(s)	577, 599, 666, 690
HphI	GGTGA	3 cut(s)	68, 363, 626
Hpy166II	GTNNAC	2 cut(s)	23, 709
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	1 cut(s)	690
Hpy8I	GTNNAC	2 cut(s)	23, 709
HpyAV	CCTTC	4 cut(s)	228, 318, 384, 408
HpyCH4V	TGCA	3 cut(s)	331, 547, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	2 cut(s)	17, 269
Hsp92II	CATG	7 cut(s)	151, 248, 335, 410, 491, 502, 551
Kpn2I	TCCGGA	1 cut(s)	689
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	209, 358
LpnPI	CCDG	4 cut(s)	590, 612, 679, 703
MaeI	CTAG	2 cut(s)	116, 727
MboII	GAAGA	9 cut(s)	56, 102, 206, 244, 306, 518, 596, 651, 686
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	9 cut(s)	6, 37, 47, 155, 187, 385, 526, 556, 603
MroI	TCCGGA	1 cut(s)	689
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	3 cut(s)	336, 435, 492
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	4 cut(s)	577, 599, 666, 690
MspR9I	CCNGG	3 cut(s)	578, 599, 600
Mva1269I	GAATGC	2 cut(s)	343, 634
MwoI	GCNNNNNNNGC	1 cut(s)	629
NciI	CCSGG	3 cut(s)	578, 599, 600
NlaIII	CATG	7 cut(s)	151, 248, 335, 410, 491, 502, 551
NlaIV	GGNNCC	2 cut(s)	496, 575
NspI	RCATGY	4 cut(s)	248, 335, 410, 551
PaeI	GCATGC	1 cut(s)	551
PciI	ACATGT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	219
PctI	GAATGC	2 cut(s)	343, 634
PkrI	GCNGC	1 cut(s)	184
PscI	ACATGT	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	496, 575
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	3 cut(s)	516, 594, 684
RsaNI	GTAC	3 cut(s)	515, 593, 683
RseI	CAYNNNNRTG	3 cut(s)	336, 435, 492
SacI	GAGCTC	1 cut(s)	214
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	3 cut(s)	578, 599, 600
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	9 cut(s)	16, 72, 121, 214, 300, 310, 376, 520, 663
SmaI	CCCGGG	1 cut(s)	600
SmiMI	CAYNNNNRTG	3 cut(s)	336, 435, 492
SmlI	CTYRAG	2 cut(s)	65, 120
SmoI	CTYRAG	2 cut(s)	65, 120
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	9 cut(s)	6, 37, 47, 155, 187, 385, 526, 556, 603
SsiI	CCGC	3 cut(s)	183, 227, 276
SspMI	CTAG	2 cut(s)	116, 727
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	3 cut(s)	576, 597, 598
StyI	CCWWGG	1 cut(s)	252
TaqI	TCGA	1 cut(s)	239
TasI	AATT	9 cut(s)	6, 37, 47, 155, 187, 385, 526, 556, 603
TauI	GCSGC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TspDTI	ATGAA	1 cut(s)	300
TspMI	CCCGGG	1 cut(s)	598
XceI	RCATGY	4 cut(s)	248, 335, 410, 551
XmaI	CCCGGG	1 cut(s)	598
XspI	CTAG	2 cut(s)	116, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.