Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 71 |
| AciI | CCGC | 1 cut(s) | 384 |
| AcsI | RAATTY | 1 cut(s) | 548 |
| AfaI | GTAC | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 250 |
| AgsI | TTSAA | 4 cut(s) | 10, 402, 577, 598 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 69, 101 |
| AluBI | AGCT | 4 cut(s) | 80, 164, 528, 635 |
| AluI | AGCT | 4 cut(s) | 80, 164, 528, 635 |
| Alw26I | GTCTC | 3 cut(s) | 205, 254, 557 |
| Aor13HI | TCCGGA | 1 cut(s) | 71 |
| AoxI | GGCC | 2 cut(s) | 225, 252 |
| ApoI | RAATTY | 1 cut(s) | 548 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 81 |
| AspS9I | GGNCC | 2 cut(s) | 205, 241 |
| AsuHPI | GGTGA | 1 cut(s) | 233 |
| AvaII | GGWCC | 2 cut(s) | 205, 241 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 48, 80 |
| BbsI | GAAGAC | 2 cut(s) | 185, 609 |
| BccI | CCATC | 4 cut(s) | 212, 226, 253, 310 |
| BceAI | ACGGC | 1 cut(s) | 32 |
| BcoDI | GTCTC | 3 cut(s) | 205, 254, 557 |
| BfaI | CTAG | 3 cut(s) | 186, 237, 267 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 233 |
| BglII | AGATCT | 2 cut(s) | 343, 624 |
| BisI | GCNGC | 1 cut(s) | 384 |
| BlsI | GCNGC | 1 cut(s) | 385 |
| Bme18I | GGWCC | 2 cut(s) | 205, 241 |
| BmgT120I | GGNCC | 2 cut(s) | 205, 241 |
| BmiI | GGNNCC | 3 cut(s) | 207, 242, 243 |
| BmsI | GCATC | 1 cut(s) | 608 |
| BpiI | GAAGAC | 2 cut(s) | 185, 609 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 185, 217 |
| BpuEI | CTTGAG | 1 cut(s) | 506 |
| BsaI | GGTCTC | 1 cut(s) | 254 |
| BsaWI | WCCGGW | 1 cut(s) | 71 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 250 |
| Bse118I | RCCGGY | 1 cut(s) | 502 |
| BseAI | TCCGGA | 1 cut(s) | 71 |
| BseGI | GGATG | 3 cut(s) | 196, 202, 469 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 250 |
| BshFI | GGCC | 2 cut(s) | 227, 254 |
| BsiSI | CCGG | 2 cut(s) | 72, 503 |
| BslFI | GGGAC | 1 cut(s) | 254 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 250 |
| BsmAI | GTCTC | 3 cut(s) | 205, 254, 557 |
| BsmFI | GGGAC | 1 cut(s) | 254 |
| BsmI | GAATGC | 1 cut(s) | 16 |
| BsnI | GGCC | 2 cut(s) | 227, 254 |
| Bso31I | GGTCTC | 1 cut(s) | 254 |
| Bsp13I | TCCGGA | 1 cut(s) | 71 |
| Bsp143I | GATC | 2 cut(s) | 343, 624 |
| BspACI | CCGC | 1 cut(s) | 384 |
| BspANI | GGCC | 2 cut(s) | 227, 254 |
| BspEI | TCCGGA | 1 cut(s) | 71 |
| BspHI | TCATGA | 1 cut(s) | 289 |
| BspLI | GGNNCC | 3 cut(s) | 207, 242, 243 |
| BspTNI | GGTCTC | 1 cut(s) | 254 |
| BsrFI | RCCGGY | 1 cut(s) | 502 |
| BssAI | RCCGGY | 1 cut(s) | 502 |
| BssMI | GATC | 2 cut(s) | 343, 624 |
| Bst6I | CTCTTC | 1 cut(s) | 385 |
| BstC8I | GCNNGC | 1 cut(s) | 127 |
| BstDEI | CTNAG | 1 cut(s) | 249 |
| BstF5I | GGATG | 3 cut(s) | 196, 202, 469 |
| BstKTI | GATC | 2 cut(s) | 346, 627 |
| BstMAI | GTCTC | 3 cut(s) | 205, 254, 557 |
| BstMBI | GATC | 2 cut(s) | 343, 624 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 233 |
| BstV2I | GAAGAC | 2 cut(s) | 185, 609 |
| BstX2I | RGATCY | 2 cut(s) | 343, 624 |
| BstYI | RGATCY | 2 cut(s) | 343, 624 |
| BsuRI | GGCC | 2 cut(s) | 227, 254 |
| BtsCI | GGATG | 3 cut(s) | 196, 202, 469 |
| Cac8I | GCNNGC | 1 cut(s) | 127 |
| CciI | TCATGA | 1 cut(s) | 289 |
| Cfr10I | RCCGGY | 1 cut(s) | 502 |
| Cfr13I | GGNCC | 2 cut(s) | 205, 241 |
| Csp6I | GTAC | 1 cut(s) | 65 |
| CviAII | CATG | 4 cut(s) | 229, 290, 356, 535 |
| CviQI | GTAC | 1 cut(s) | 65 |
| DdeI | CTNAG | 1 cut(s) | 249 |
| DpnI | GATC | 2 cut(s) | 345, 626 |
| DpnII | GATC | 2 cut(s) | 343, 624 |
| DraI | TTTAAA | 1 cut(s) | 553 |
| Eam1104I | CTCTTC | 1 cut(s) | 385 |
| EarI | CTCTTC | 1 cut(s) | 385 |
| Eco31I | GGTCTC | 1 cut(s) | 254 |
| Eco47I | GGWCC | 2 cut(s) | 205, 241 |
| EcoO109I | RGGNCCY | 1 cut(s) | 241 |
| EcoT22I | ATGCAT | 1 cut(s) | 357 |
| FaeI | CATG | 4 cut(s) | 232, 293, 359, 538 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 69, 101, 410, 442 |
| FaqI | GGGAC | 1 cut(s) | 254 |
| FatI | CATG | 4 cut(s) | 228, 289, 355, 534 |
| FauNDI | CATATG | 1 cut(s) | 351 |
| Fnu4HI | GCNGC | 1 cut(s) | 384 |
| FokI | GGATG | 3 cut(s) | 203, 209, 476 |
| Fsp4HI | GCNGC | 1 cut(s) | 384 |
| FspBI | CTAG | 3 cut(s) | 186, 237, 267 |
| GluI | GCNGC | 1 cut(s) | 384 |
| HaeIII | GGCC | 2 cut(s) | 227, 254 |
| HapII | CCGG | 2 cut(s) | 72, 503 |
| Hin1II | CATG | 4 cut(s) | 232, 293, 359, 538 |
| HinfI | GANTC | 1 cut(s) | 274 |
| HpaII | CCGG | 2 cut(s) | 72, 503 |
| HphI | GGTGA | 1 cut(s) | 233 |
| Hpy188I | TCNGA | 1 cut(s) | 205 |
| Hpy188III | TCNNGA | 4 cut(s) | 72, 278, 290, 523 |
| HpyAV | CCTTC | 1 cut(s) | 571 |
| HpyCH4V | TGCA | 5 cut(s) | 125, 355, 534, 589, 621 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 233 |
| HpyF3I | CTNAG | 1 cut(s) | 249 |
| Hsp92II | CATG | 4 cut(s) | 232, 293, 359, 538 |
| KflI | GGGWCCC | 1 cut(s) | 241 |
| Kpn2I | TCCGGA | 1 cut(s) | 71 |
| Kzo9I | GATC | 2 cut(s) | 343, 624 |
| LmnI | GCTCC | 1 cut(s) | 632 |
| LpnPI | CCDG | 3 cut(s) | 85, 516, 613 |
| LweI | GCATC | 1 cut(s) | 608 |
| MaeI | CTAG | 3 cut(s) | 186, 237, 267 |
| MalI | GATC | 2 cut(s) | 345, 626 |
| MboI | GATC | 2 cut(s) | 343, 624 |
| MflI | RGATCY | 2 cut(s) | 343, 624 |
| MluCI | AATT | 5 cut(s) | 212, 397, 515, 548, 590 |
| Mph1103I | ATGCAT | 1 cut(s) | 357 |
| MroI | TCCGGA | 1 cut(s) | 71 |
| MroXI | GAANNNNTTC | 1 cut(s) | 81 |
| MseI | TTAA | 3 cut(s) | 428, 453, 552 |
| MslI | CAYNNNNRTG | 1 cut(s) | 354 |
| MspI | CCGG | 2 cut(s) | 72, 503 |
| Mva1269I | GAATGC | 1 cut(s) | 16 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 233 |
| NdeI | CATATG | 1 cut(s) | 351 |
| NdeII | GATC | 2 cut(s) | 343, 624 |
| NlaIII | CATG | 4 cut(s) | 232, 293, 359, 538 |
| NlaIV | GGNNCC | 3 cut(s) | 207, 242, 243 |
| NsiI | ATGCAT | 1 cut(s) | 357 |
| PagI | TCATGA | 1 cut(s) | 289 |
| PctI | GAATGC | 1 cut(s) | 16 |
| PdmI | GAANNNNTTC | 1 cut(s) | 81 |
| PfeI | GAWTC | 1 cut(s) | 274 |
| PkrI | GCNGC | 1 cut(s) | 385 |
| PpuMI | RGGWCCY | 1 cut(s) | 241 |
| Psp5II | RGGWCCY | 1 cut(s) | 241 |
| PspN4I | GGNNCC | 3 cut(s) | 207, 242, 243 |
| PspPI | GGNCC | 2 cut(s) | 205, 241 |
| PspPPI | RGGWCCY | 1 cut(s) | 241 |
| PsuI | RGATCY | 2 cut(s) | 343, 624 |
| RsaI | GTAC | 1 cut(s) | 66 |
| RsaNI | GTAC | 1 cut(s) | 65 |
| RseI | CAYNNNNRTG | 1 cut(s) | 354 |
| SaqAI | TTAA | 3 cut(s) | 428, 453, 552 |
| SatI | GCNGC | 1 cut(s) | 384 |
| Sau3AI | GATC | 2 cut(s) | 343, 624 |
| Sau96I | GGNCC | 2 cut(s) | 205, 241 |
| SetI | ASST | 8 cut(s) | 45, 82, 97, 166, 266, 489, 530, 637 |
| SfaNI | GCATC | 1 cut(s) | 608 |
| SinI | GGWCC | 2 cut(s) | 205, 241 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 354 |
| SmlI | CTYRAG | 1 cut(s) | 521 |
| SmoI | CTYRAG | 1 cut(s) | 521 |
| Sse9I | AATT | 5 cut(s) | 212, 397, 515, 548, 590 |
| SsiI | CCGC | 1 cut(s) | 384 |
| SspI | AATATT | 2 cut(s) | 450, 472 |
| SspMI | CTAG | 3 cut(s) | 186, 237, 267 |
| TasI | AATT | 5 cut(s) | 212, 397, 515, 548, 590 |
| TauI | GCSGC | 1 cut(s) | 386 |
| TfiI | GAWTC | 1 cut(s) | 274 |
| Tru1I | TTAA | 3 cut(s) | 428, 453, 552 |
| Tru9I | TTAA | 3 cut(s) | 428, 453, 552 |
| TspDTI | ATGAA | 3 cut(s) | 372, 482, 551 |
| VpaK11BI | GGWCC | 2 cut(s) | 205, 241 |
| XapI | RAATTY | 1 cut(s) | 548 |
| XmnI | GAANNNNTTC | 1 cut(s) | 81 |
| XspI | CTAG | 3 cut(s) | 186, 237, 267 |
| Zsp2I | ATGCAT | 1 cut(s) | 357 |