Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001353.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

227627 .. 228775

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001353.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgggccagatagccaccaatttgagtgagagaccaatgggagctcttccttccacaacggagaagaacccgaagcatgtagccaaggctattactactcttagaagcgcgaggacatacgacaataaggtatatttaccttcatcttctcaatcccctttgcatgtgaatgccccatttgatgctccctctcctactatatcaccttctcttggtaattgtgtttccccttccacacatgttcccaactctacctctctacattctaatgatgattatgtgttggttgaggaatatgatagtgataatagtgatacgcatgatggcgccatgagggaagaaaatgtacctcgtggcaatttgaataatgattatttgcatgcttttaattcaaaggaggatgggaaccggggggaagaaaatgtacccccgggaattggagtgagtgatgtggctttgaatgcaaaaggaagaaataagggggtggataaggtaaccggaggggaagaaaatgtaccctccgaaggagtttctaatgttgacaagcctcacacaagccaagcttcggtttctcccagttttattcaagacaagactacaaatccttctattgtgcatccgatggtttctagagatattgtagatcctaagaatgggaattccatggctcttgataatttgggcgaggctatgaaggctagggaccccaatgaagccgtgagtaaccctagggatccatcaagtggtcaagcatctactcaagctcaaaagccaagaaagggttcaatttgtgtgcctcctctaaatatgacagattatgagattccattgccttatcctcaagtgaagcggaagcaagagttaaagaagaagcaagaagcacaaacgaaagagttcattgagttgttcaagaaagtcaacatcaatatccctttgttggaagccataaagcaagtgccttcttatgctaagtttctaaaggatgtgtgcacaaacaaaagagcatctaaggagcatgagcaagtttgtctaagtgagagtgtatcggctattcttcaaggaaaattgcctcctaaacttatcccggtagtttcaccgcgccatgcactattgggtcaagattctttgacaaggcgatgttggacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

382

Amino Acids

41.62

Weight (kDa)

7.15

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccB7I	CCANNNNNTGG	1 cut(s)	743
AccII	CGCG	2 cut(s)	110, 1099
AciI	CCGC	2 cut(s)	850, 1097
AclWI	GGATC	3 cut(s)	638, 728, 741
AcsI	RAATTY	1 cut(s)	658
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	3 cut(s)	348, 426, 516
AfiI	CCNNNNNNNGG	8 cut(s)	212, 437, 524, 565, 653, 743, 779, 937
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	7 cut(s)	364, 393, 460, 587, 786, 910, 1058
AjuI	GAANNNNNNNTTGG	2 cut(s)	766, 798
AluBI	AGCT	3 cut(s)	44, 563, 764
AluI	AGCT	3 cut(s)	44, 563, 764
Alw21I	GWGCWC	2 cut(s)	46, 992
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	988
AlwI	GGATC	3 cut(s)	638, 728, 741
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	1 cut(s)	4
ApaLI	GTGCAC	1 cut(s)	988
ApoI	RAATTY	1 cut(s)	658
Asp700I	GAANNNNTTC	2 cut(s)	781, 893
AspA2I	CCTAGG	1 cut(s)	728
AspLEI	GCGC	3 cut(s)	110, 329, 1101
AspS9I	GGNCC	2 cut(s)	4, 703
AsuC2I	CCSGG	4 cut(s)	410, 431, 432, 1085
AsuHPI	GGTGA	2 cut(s)	195, 1086
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	703
AvrII	CCTAGG	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	992
BamHI	GGATCC	1 cut(s)	733
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	6 cut(s)	330, 362, 408, 440, 498, 530
BauI	CACGAG	1 cut(s)	351
Bbv12I	GWGCWC	2 cut(s)	46, 992
BccI	CCATC	4 cut(s)	317, 395, 616, 745
BceAI	ACGGC	1 cut(s)	701
BcnI	CCSGG	4 cut(s)	410, 431, 432, 1085
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	630, 699, 729
BfoI	RGCGCY	1 cut(s)	330
BlnI	CCTAGG	1 cut(s)	728
Bme1390I	CCNGG	4 cut(s)	410, 431, 432, 1085
Bme18I	GGWCC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	4, 703
BmiI	GGNNCC	5 cut(s)	328, 407, 704, 705, 735
BmrFI	CCNGG	4 cut(s)	410, 431, 432, 1085
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	4 cut(s)	172, 625, 761, 1013
BmuI	ACTGGG	1 cut(s)	570
BpuEI	CTTGAG	2 cut(s)	744, 825
BpuMI	CCSGG	4 cut(s)	410, 431, 432, 1085
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	6 cut(s)	84, 409, 429, 430, 663, 728
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	8 cut(s)	212, 437, 524, 565, 653, 743, 779, 937
Bse1I	ACTGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	827
BseDI	CCNNGG	6 cut(s)	84, 409, 429, 430, 663, 728
BseGI	GGATG	3 cut(s)	406, 616, 988
BseLI	CCNNNNNNNGG	8 cut(s)	212, 437, 524, 565, 653, 743, 779, 937
BseMI	GCAATG	1 cut(s)	827
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	1 cut(s)	789
BseSI	GKGCMC	1 cut(s)	992
Bsh1236I	CGCG	2 cut(s)	110, 1099
BshFI	GGCC	1 cut(s)	6
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	46, 992
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	4 cut(s)	409, 431, 498, 1085
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	8 cut(s)	212, 437, 524, 565, 653, 743, 779, 937
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	716
BsmI	GAATGC	2 cut(s)	175, 466
BsnI	GGCC	1 cut(s)	6
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	46, 992
Bsp143I	GATC	2 cut(s)	643, 733
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	2 cut(s)	850, 1097
BspANI	GGCC	1 cut(s)	6
BspFNI	CGCG	2 cut(s)	110, 1099
BspLI	GGNNCC	5 cut(s)	328, 407, 704, 705, 735
BspPI	GGATC	3 cut(s)	638, 728, 741
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	827
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	6 cut(s)	84, 409, 429, 430, 663, 728
BssMI	GATC	2 cut(s)	643, 733
BssNI	GRCGYC	1 cut(s)	327
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	3 cut(s)	84, 663, 728
Bst2BI	CACGAG	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	6 cut(s)	101, 648, 969, 1008, 1031, 1146
BstDSI	CCRYGG	1 cut(s)	663
BstEII	GGTNACC	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	406, 616, 988
BstFNI	CGCG	2 cut(s)	110, 1099
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	110, 329, 1101
BstKTI	GATC	2 cut(s)	646, 736
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	643, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 695
BstNSI	RCATGY	4 cut(s)	80, 167, 242, 383
BstPI	GGTNACC	1 cut(s)	493
BstSCI	CCNGG	4 cut(s)	408, 429, 430, 1083
BstSLI	GKGCMC	1 cut(s)	992
BstUI	CGCG	2 cut(s)	110, 1099
BstX2I	RGATCY	2 cut(s)	643, 733
BstYI	RGATCY	2 cut(s)	643, 733
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	3 cut(s)	406, 616, 988
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	3 cut(s)	110, 329, 1101
Cfr13I	GGNCC	2 cut(s)	4, 703
Cfr9I	CCCGGG	1 cut(s)	430
Csp6I	GTAC	3 cut(s)	347, 425, 515
CviAII	CATG	9 cut(s)	77, 164, 239, 320, 331, 380, 664, 1016, 1103
CviQI	GTAC	3 cut(s)	347, 425, 515
DdeI	CTNAG	6 cut(s)	101, 648, 969, 1008, 1031, 1146
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	2 cut(s)	645, 735
DpnII	GATC	2 cut(s)	643, 733
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	3 cut(s)	84, 663, 728
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	703
Eco53kI	GAGCTC	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	430
Eco91I	GGTNACC	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	703
EcoO65I	GGTNACC	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	658
EcoT14I	CCWWGG	3 cut(s)	84, 663, 728
EcoT38I	GRGCYC	1 cut(s)	46
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
ErhI	CCWWGG	3 cut(s)	84, 663, 728
FaeI	CATG	9 cut(s)	80, 167, 242, 323, 334, 383, 667, 1019, 1106
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	9 cut(s)	76, 163, 238, 319, 330, 379, 663, 1015, 1102
FokI	GGATG	3 cut(s)	413, 603, 995
FriOI	GRGCYC	1 cut(s)	46
FspBI	CTAG	3 cut(s)	630, 699, 729
GlaI	GCGC	3 cut(s)	109, 328, 1100
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	4 cut(s)	409, 431, 498, 1085
HhaI	GCGC	3 cut(s)	110, 329, 1101
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	9 cut(s)	80, 167, 242, 323, 334, 383, 667, 1019, 1106
Hin6I	GCGC	3 cut(s)	108, 327, 1099
HinP1I	GCGC	3 cut(s)	108, 327, 1099
HincII	GTYRAC	2 cut(s)	541, 919
HindII	GTYRAC	2 cut(s)	541, 919
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	2 cut(s)	823, 1121
HpaII	CCGG	4 cut(s)	409, 431, 498, 1085
HphI	GGTGA	2 cut(s)	195, 1086
Hpy166II	GTNNAC	3 cut(s)	541, 919, 990
Hpy188I	TCNGA	2 cut(s)	523, 621
Hpy188III	TCNNGA	5 cut(s)	587, 630, 671, 910, 1118
Hpy8I	GTNNAC	3 cut(s)	541, 919, 990
HpyAV	CCTTC	8 cut(s)	60, 150, 216, 240, 518, 615, 688, 969
HpyCH4V	TGCA	6 cut(s)	163, 379, 464, 616, 990, 1106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 695
HpyF3I	CTNAG	6 cut(s)	101, 648, 969, 1008, 1031, 1146
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	9 cut(s)	80, 167, 242, 323, 334, 383, 667, 1019, 1106
HspAI	GCGC	3 cut(s)	108, 327, 1099
KasI	GGCGCC	1 cut(s)	326
KflI	GGGWCCC	1 cut(s)	703
Kzo9I	GATC	2 cut(s)	643, 733
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	41, 190, 1012
LpnPI	CCDG	6 cut(s)	20, 422, 444, 511, 589, 1098
LweI	GCATC	4 cut(s)	172, 625, 761, 1013
MaeI	CTAG	3 cut(s)	630, 699, 729
MaeIII	GTNAC	2 cut(s)	493, 722
MalI	GATC	2 cut(s)	645, 735
MboI	GATC	2 cut(s)	643, 733
MboII	GAAGA	9 cut(s)	38, 76, 138, 350, 428, 483, 518, 880, 1046
MflI	RGATCY	2 cut(s)	643, 733
MhlI	GDGCHC	2 cut(s)	46, 992
MluCI	AATT	9 cut(s)	19, 217, 358, 388, 435, 658, 676, 786, 1064
Mly113I	GGCGCC	1 cut(s)	327
MmeI	TCCRAC	2 cut(s)	918, 1121
MroXI	GAANNNNTTC	2 cut(s)	781, 893
MseI	TTAA	2 cut(s)	387, 863
MslI	CAYNNNNRTG	2 cut(s)	168, 267
MspI	CCGG	4 cut(s)	409, 431, 498, 1085
MspR9I	CCNGG	4 cut(s)	410, 431, 432, 1085
Mva1269I	GAATGC	2 cut(s)	175, 466
MvnI	CGCG	2 cut(s)	110, 1099
MwoI	GCNNNNNNNGC	2 cut(s)	461, 695
NarI	GGCGCC	1 cut(s)	327
NciI	CCSGG	4 cut(s)	410, 431, 432, 1085
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	2 cut(s)	643, 733
NlaIII	CATG	9 cut(s)	80, 167, 242, 323, 334, 383, 667, 1019, 1106
NlaIV	GGNNCC	5 cut(s)	328, 407, 704, 705, 735
NspI	RCATGY	4 cut(s)	80, 167, 242, 383
PaeI	GCATGC	1 cut(s)	383
PciI	ACATGT	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	2 cut(s)	175, 466
PdmI	GAANNNNTTC	2 cut(s)	781, 893
PfeI	GAWTC	2 cut(s)	823, 1121
PflMI	CCANNNNNTGG	1 cut(s)	743
PluTI	GGCGCC	1 cut(s)	330
PpuMI	RGGWCCY	1 cut(s)	703
PscI	ACATGT	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	703
PspEI	GGTNACC	1 cut(s)	493
PspN4I	GGNNCC	5 cut(s)	328, 407, 704, 705, 735
PspPI	GGNCC	2 cut(s)	4, 703
PspPPI	RGGWCCY	1 cut(s)	703
PsuI	RGATCY	2 cut(s)	643, 733
RsaI	GTAC	3 cut(s)	348, 426, 516
RsaNI	GTAC	3 cut(s)	347, 425, 515
RseI	CAYNNNNRTG	2 cut(s)	168, 267
SacI	GAGCTC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	387, 863
Sau3AI	GATC	2 cut(s)	643, 733
Sau96I	GGNCC	2 cut(s)	4, 703
ScrFI	CCNGG	4 cut(s)	410, 431, 432, 1085
SduI	GDGCHC	2 cut(s)	46, 992
SetI	ASST	9 cut(s)	46, 132, 142, 208, 257, 352, 495, 565, 766
SfaNI	GCATC	4 cut(s)	172, 625, 761, 1013
SfoI	GGCGCC	1 cut(s)	328
SinI	GGWCC	1 cut(s)	703
SmaI	CCCGGG	1 cut(s)	432
SmiMI	CAYNNNNRTG	2 cut(s)	168, 267
SmlI	CTYRAG	2 cut(s)	759, 840
SmoI	CTYRAG	2 cut(s)	759, 840
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	9 cut(s)	19, 217, 358, 388, 435, 658, 676, 786, 1064
SsiI	CCGC	2 cut(s)	850, 1097
SspDI	GGCGCC	1 cut(s)	326
SspMI	CTAG	3 cut(s)	630, 699, 729
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	4 cut(s)	408, 429, 430, 1083
StyI	CCWWGG	3 cut(s)	84, 663, 728
TasI	AATT	9 cut(s)	19, 217, 358, 388, 435, 658, 676, 786, 1064
TfiI	GAWTC	2 cut(s)	823, 1121
Tru1I	TTAA	2 cut(s)	387, 863
Tru9I	TTAA	2 cut(s)	387, 863
TspDTI	ATGAA	4 cut(s)	132, 707, 726, 886
TspGWI	ACGGA	1 cut(s)	74
TspMI	CCCGGG	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	743
VneI	GTGCAC	1 cut(s)	988
VpaK11BI	GGWCC	1 cut(s)	703
XapI	RAATTY	1 cut(s)	658
XbaI	TCTAGA	1 cut(s)	629
XceI	RCATGY	4 cut(s)	80, 167, 242, 383
XmaI	CCCGGG	1 cut(s)	430
XmaJI	CCTAGG	1 cut(s)	728
XmnI	GAANNNNTTC	2 cut(s)	781, 893
XspI	CTAG	3 cut(s)	630, 699, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.