Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002702.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

36283 .. 36861

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002702.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgcatgtgcattttggccccactactcctttatcatcacctagggatctacatcaaggggggaggaataaggcggaagctacttcatctacttctattgatacacatggttcatcctcgggtttgagttctaatggttcaccgcctatttcgtcatctagtgagcatcaggaacaacatcaagggggaagtaataaggaggaagactattctcatgtacctttggattctagggataggagtggaccgatccattctacactaggcgaggccttaagggctaagaaccctagtgggacggttaccacccttaggggttcaagggggagtctcactttttctccacctcttgatttgaactcatcggagcctagacttccctatccacaagttaagagggctcaagatcaaaagaagcggaaggagacacaaaagcaagagttcattgagctattcaagtccgttaacatcaatatcccattacttgatgccatcaagcaagtaccggcctatgtaaaatgcttgaaggacatgtgcactaataagaggaagtttgtggagaatgaagatatatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve

Protein Analysis

192

Amino Acids

21.15

Weight (kDa)

8.85

Isoelectric Point (pI)

68.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	74, 143, 418
AclWI	GGATC	2 cut(s)	54, 244
AfaI	GTAC	2 cut(s)	219, 504
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflII	CTTAAG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	4 cut(s)	321, 358, 457, 526
AluBI	AGCT	2 cut(s)	80, 451
AluI	AGCT	2 cut(s)	80, 451
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	2 cut(s)	335, 419
Alw44I	GTGCAC	1 cut(s)	535
AlwI	GGATC	2 cut(s)	54, 244
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	3 cut(s)	16, 270, 507
ApaLI	GTGCAC	1 cut(s)	535
AspA2I	CCTAGG	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	17, 245
AsuHPI	GGTGA	2 cut(s)	30, 132
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	245
AvrII	CCTAGG	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	539
BccI	CCATC	1 cut(s)	500
BcoDI	GTCTC	2 cut(s)	335, 419
BfaI	CTAG	6 cut(s)	42, 159, 231, 263, 291, 372
BfrI	CTTAAG	1 cut(s)	274
BglI	GCCNNNNNGGC	1 cut(s)	278
BlnI	CCTAGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	17, 245
BmiI	GGNNCC	2 cut(s)	19, 369
BmsI	GCATC	2 cut(s)	175, 478
BpiI	GAAGAC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	41, 117
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	505
Bse21I	CCTNAGG	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	41, 117
BseGI	GGATG	1 cut(s)	113
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	539
BshFI	GGCC	3 cut(s)	18, 272, 509
BsiHKAI	GWGCWC	1 cut(s)	539
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	335, 419
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	18, 272, 509
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	403, 539
Bsp143I	GATC	3 cut(s)	46, 249, 406
BspACI	CCGC	3 cut(s)	74, 143, 418
BspANI	GGCC	3 cut(s)	18, 272, 509
BspLI	GGNNCC	2 cut(s)	19, 369
BspPI	GGATC	2 cut(s)	54, 244
BspTI	CTTAAG	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	41, 117
BssMI	GATC	3 cut(s)	46, 249, 406
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	301
BstAFI	CTTAAG	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	282, 311
BstEII	GGTNACC	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	49, 252, 409
BstMAI	GTCTC	2 cut(s)	335, 419
BstMBI	GATC	3 cut(s)	46, 249, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	2 cut(s)	8, 535
BstPI	GGTNACC	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	539
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	18, 272, 509
BtsCI	GGATG	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	2 cut(s)	17, 245
Csp6I	GTAC	2 cut(s)	218, 503
CviAII	CATG	4 cut(s)	5, 107, 215, 532
CviJI	RGCY	8 cut(s)	18, 80, 272, 281, 370, 401, 451, 509
CviKI_1	RGCY	8 cut(s)	18, 80, 272, 281, 370, 401, 451, 509
CviQI	GTAC	2 cut(s)	218, 503
DdeI	CTNAG	2 cut(s)	282, 311
DpnI	GATC	3 cut(s)	48, 251, 408
DpnII	GATC	3 cut(s)	46, 249, 406
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	245
Eco81I	CCTNAGG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	118
Eco91I	GGTNACC	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	4 cut(s)	8, 110, 218, 535
FaiI	YATR	7 cut(s)	6, 108, 216, 513, 533, 572, 574
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	4 cut(s)	4, 106, 214, 531
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	403
FspBI	CTAG	6 cut(s)	42, 159, 231, 263, 291, 372
HaeIII	GGCC	3 cut(s)	18, 272, 509
HapII	CCGG	1 cut(s)	506
Hin1II	CATG	4 cut(s)	8, 110, 218, 535
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	227, 328
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	2 cut(s)	30, 132
Hpy166II	GTNNAC	4 cut(s)	140, 245, 466, 537
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	3 cut(s)	170, 350, 404
Hpy8I	GTNNAC	4 cut(s)	140, 245, 466, 537
HpyAV	CCTTC	2 cut(s)	415, 520
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	4, 10, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	282, 311
Hsp92II	CATG	4 cut(s)	8, 110, 218, 535
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	46, 249, 406
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	2 cut(s)	155, 519
LweI	GCATC	2 cut(s)	175, 478
MaeI	CTAG	6 cut(s)	42, 159, 231, 263, 291, 372
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	3 cut(s)	48, 251, 408
MboI	GATC	3 cut(s)	46, 249, 406
MboII	GAAGA	2 cut(s)	215, 578
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	403, 539
MlyI	GAGTC	1 cut(s)	337
MnlI	CCTC	7 cut(s)	57, 127, 193, 262, 357, 390, 540
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	275, 393, 465
MspCI	CTTAAG	1 cut(s)	274
MspI	CCGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	3 cut(s)	46, 249, 406
NlaIII	CATG	4 cut(s)	8, 110, 218, 535
NlaIV	GGNNCC	2 cut(s)	19, 369
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 535
PceI	AGGCCT	1 cut(s)	272
PciI	ACATGT	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PscI	ACATGT	1 cut(s)	531
PspEI	GGTNACC	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	19, 369
PspPI	GGNCC	2 cut(s)	17, 245
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	2 cut(s)	219, 504
RsaNI	GTAC	2 cut(s)	218, 503
SaqAI	TTAA	3 cut(s)	275, 393, 465
Sau3AI	GATC	3 cut(s)	46, 249, 406
Sau96I	GGNCC	2 cut(s)	17, 245
SchI	GAGTC	1 cut(s)	337
SduI	GDGCHC	2 cut(s)	403, 539
SetI	ASST	5 cut(s)	43, 82, 223, 349, 453
SfaNI	GCATC	2 cut(s)	175, 478
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	274, 402
SmoI	CTYRAG	2 cut(s)	274, 402
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	3 cut(s)	74, 143, 418
SspMI	CTAG	6 cut(s)	42, 159, 231, 263, 291, 372
StuI	AGGCCT	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	301
TaqII	GACCGA	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	275, 393, 465
Tru9I	TTAA	3 cut(s)	275, 393, 465
TspDTI	ATGAA	4 cut(s)	75, 102, 433, 579
TspGWI	ACGGA	1 cut(s)	451
Vha464I	CTTAAG	1 cut(s)	274
VneI	GTGCAC	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	2 cut(s)	8, 535
XmaJI	CCTAGG	1 cut(s)	41
XspI	CTAG	6 cut(s)	42, 159, 231, 263, 291, 372
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.