Rh5BG351400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
54119309 .. 54127430
8122 bp
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UTR
Exon/CDS
Intron
Rh5BG351400.1

Sequence Viewer

Length: 444 bp
ATGGAAGCTTGGGGTATCATTGAGGACTTATCTAAACAAAGTGCAAGGTGGGACTCTCATGACCGAAGAAGAAGACCAAGAGATGAATTTGAGAAGCCAAGGAGCCGAGAATTATATGATGAGCATAAGAGTCGAGATTCCTATGATGAGCCTAAGAGAGGTCGTGACACCCTTGATGATTTAAGGAGGAGCTGTGAGTTGTATGATGAGCCACGGACTTGTGAGCATGGTGTTGATAATGTTAGAGGCCGAGAGCCTTTACCTAGAGGTCGTGGGATTTATGAGGTGTCTATGCCAAGTGATGGAATGATGAGTTCAAAGTTAGATAGACTTGAGAAAAAGATGGAGCAATTACTTGAGAAGCAAGACCATGAGGCACACATTTCACAAGTCTTATTGGCTTTGCTATTTGGGCTTCACTTTGAATGCAGTGGTACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

17.36

Weight (kDa)

5.72

Isoelectric Point (pI)

75.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 2 cut(s) 158, 302
AgsI TTSAA 2 cut(s) 318, 425
AluBI AGCT 2 cut(s) 8, 192
AluI AGCT 2 cut(s) 8, 192
AoxI GGCC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 79
BccI CCATC 2 cut(s) 296, 337
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BfaI CTAG 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 353, 377
BsaJI CCNNGG 2 cut(s) 98, 212
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 302
BseDI CCNNGG 2 cut(s) 98, 212
BseLI CCNNNNNNNGG 2 cut(s) 158, 302
BseRI GAGGAG 1 cut(s) 202
BshFI GGCC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 158, 302
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 1 cut(s) 249
BspANI GGCC 1 cut(s) 249
BspHI TCATGA 2 cut(s) 58, 440
BspLI GGNNCC 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 98, 212
BssT1I CCWWGG 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 212
BstENI CCTNNNNNAGG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 436
CciI TCATGA 2 cut(s) 58, 440
Csp6I GTAC 1 cut(s) 435
CviAII CATG 4 cut(s) 59, 227, 371, 441
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 98
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 4 cut(s) 62, 230, 374, 444
FaqI GGGAC 1 cut(s) 65
FatI CATG 4 cut(s) 58, 226, 370, 440
FspBI CTAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 249
Hin1II CATG 4 cut(s) 62, 230, 374, 444
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 3 cut(s) 53, 130, 137
Hpy188III TCNNGA 4 cut(s) 59, 134, 164, 441
HpyCH4V TGCA 2 cut(s) 44, 429
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 4 cut(s) 62, 230, 374, 444
LmnI GCTCC 3 cut(s) 102, 189, 346
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 164
MboII GAAGA 3 cut(s) 78, 81, 84
MluCI AATT 3 cut(s) 86, 110, 350
MlyI GAGTC 2 cut(s) 47, 139
MnlI CCTC 7 cut(s) 16, 152, 180, 239, 260, 277, 367
MseI TTAA 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 412
NlaIII CATG 4 cut(s) 62, 230, 374, 444
NlaIV GGNNCC 1 cut(s) 104
NmeAIII GCCGAG 2 cut(s) 131, 275
NmuCI GTSAC 1 cut(s) 164
PagI TCATGA 2 cut(s) 58, 440
PctI GAATGC 1 cut(s) 431
PfeI GAWTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 302
PleI GAGTC 2 cut(s) 47, 138
PpsI GAGTC 2 cut(s) 47, 138
PspN4I GGNNCC 1 cut(s) 104
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
SaqAI TTAA 1 cut(s) 182
SchI GAGTC 2 cut(s) 47, 139
SetI ASST 7 cut(s) 10, 50, 163, 194, 265, 271, 288
SmlI CTYRAG 2 cut(s) 332, 356
SmoI CTYRAG 2 cut(s) 332, 356
Sse9I AATT 3 cut(s) 86, 110, 350
SspMI CTAG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 98
TaqI TCGA 1 cut(s) 133
TaqII GACCGA 1 cut(s) 78
TasI AATT 3 cut(s) 86, 110, 350
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 99, 429
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 1 cut(s) 436
Van91I CCANNNNNTGG 1 cut(s) 302
XagI CCTNNNNNAGG 1 cut(s) 156
XapI RAATTY 1 cut(s) 86
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.