Rw5G029510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001407
Physical Location & Seq
Reverse (-)
45468533 .. 45469165
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G029510.1

Sequence Viewer

Length: 633 bp
ATGATTTTTTTTTATCATAAGGAGGATGGAACCGGAAGGGAAGAAAATGTACCTTTCGGTAGATATGGAGTGGTTGATGTGACTTTGAATGGTAAAGGAAGAAATAAAGGGGTGGATAAGGTAGCCGGAGGGGAAGAAAATATACCATTCGGAGGCGCTATTCTTGGTAAAGGTTATGGTTTCTTGTCTTTCAAGAATGATGTGAGCAAATATGGTTTGATTGATAATGGCAAAGAAAGGGCCATGTTGAGAAAAAAGACTTCTAGGGATGAGGAAGTTTTGGATCCTAGATTAGATGGTGAGGCCATGCAGACTAGAGACCCATCTAAGTCTGATGACACATCTAGGAAGGTTCTTGATGACATTAGACCCACTCAAGAGTTAGAGCCATCTACTTCGATTGAAAAAGAGGGGAGGAATAAGAAGGAAGATATATATGTGCATGCTAGCTCTAAGGATAGGAGTGGTCTGGTCTACTCATCACTAGGCGAGGCCTTGAGGGCTAAGAACCCTAGTGGGACAGTGACTAACCTTAGGGGTACCATTGGAAGTCTCACATTTGATCCACCTCTTGATTTGAATGCACCGGAGCCTCGACTACCTTATCCTAATGCCGCAAGAAGAGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.18

Weight (kDa)

6.22

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 539
AccI GTMKAC 1 cut(s) 474
AciI CCGC 1 cut(s) 615
AclWI GGATC 3 cut(s) 278, 291, 557
AfaI GTAC 2 cut(s) 51, 541
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 4 cut(s) 88, 193, 404, 580
AluBI AGCT 1 cut(s) 450
AluI AGCT 1 cut(s) 450
Alw26I GTCTC 2 cut(s) 312, 557
AlwI GGATC 3 cut(s) 278, 291, 557
AoxI GGCC 3 cut(s) 240, 303, 492
Asp718I GGTACC 1 cut(s) 539
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 311
AsuNHI GCTAGC 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 533
BamHI GGATCC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 539
BarI GAAGNNNNNNTAC 4 cut(s) 33, 65, 126, 158
BccI CCATC 4 cut(s) 20, 290, 331, 397
BcoDI GTCTC 2 cut(s) 312, 557
BfaI CTAG 7 cut(s) 264, 288, 315, 345, 447, 485, 513
BfoI RGCGCY 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 500
BisI GCNGC 1 cut(s) 615
BlsI GCNGC 1 cut(s) 616
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 4 cut(s) 31, 285, 541, 591
BmtI GCTAGC 1 cut(s) 450
BpuEI CTTGAG 2 cut(s) 360, 517
BsaI GGTCTC 1 cut(s) 312
BsaWI WCCGGW 2 cut(s) 32, 586
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse21I CCTNAGG 1 cut(s) 533
BseGI GGATG 2 cut(s) 31, 274
BseLI CCNNNNNNNGG 1 cut(s) 152
BshFI GGCC 3 cut(s) 242, 305, 494
BshNI GGYRCC 1 cut(s) 539
BsiSI CCGG 3 cut(s) 33, 126, 587
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 312, 557
BsmFI GGGAC 1 cut(s) 532
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 3 cut(s) 242, 305, 494
Bso31I GGTCTC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 283, 562
BspACI CCGC 1 cut(s) 615
BspANI GGCC 3 cut(s) 242, 305, 494
BspLI GGNNCC 4 cut(s) 31, 285, 541, 591
BspOI GCTAGC 1 cut(s) 450
BspPI GGATC 3 cut(s) 278, 291, 557
BspT107I GGYRCC 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 312
BssMI GATC 2 cut(s) 283, 562
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 1 cut(s) 616
BstC8I GCNNGC 2 cut(s) 444, 448
BstDEI CTNAG 4 cut(s) 327, 453, 504, 533
BstF5I GGATG 2 cut(s) 31, 274
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 286, 565
BstMAI GTCTC 2 cut(s) 312, 557
BstMBI GATC 2 cut(s) 283, 562
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNSI RCATGY 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 533
BsuRI GGCC 3 cut(s) 242, 305, 494
BtsCI GGATG 2 cut(s) 31, 274
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 2 cut(s) 444, 448
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 2 cut(s) 50, 540
CviAII CATG 3 cut(s) 244, 307, 443
CviJI RGCY 8 cut(s) 125, 242, 305, 388, 450, 494, 503, 592
CviKI_1 RGCY 8 cut(s) 125, 242, 305, 388, 450, 494, 503, 592
CviQI GTAC 2 cut(s) 50, 540
DdeI CTNAG 4 cut(s) 327, 453, 504, 533
DpnI GATC 2 cut(s) 285, 564
DpnII GATC 2 cut(s) 283, 562
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
Eco147I AGGCCT 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 312
Eco81I CCTNAGG 1 cut(s) 533
FaeI CATG 3 cut(s) 247, 310, 446
FaqI GGGAC 1 cut(s) 532
FatI CATG 3 cut(s) 243, 306, 442
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 615
FokI GGATG 2 cut(s) 38, 281
Fsp4HI GCNGC 1 cut(s) 615
FspBI CTAG 7 cut(s) 264, 288, 315, 345, 447, 485, 513
GlaI GCGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 615
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 3 cut(s) 242, 305, 494
HapII CCGG 3 cut(s) 33, 126, 587
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 247, 310, 446
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HpaII CCGG 3 cut(s) 33, 126, 587
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 2 cut(s) 152, 334
Hpy188III TCNNGA 4 cut(s) 193, 356, 377, 572
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 3 cut(s) 30, 343, 418
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4V TGCA 3 cut(s) 310, 442, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 4 cut(s) 327, 453, 504, 533
Hsp92II CATG 3 cut(s) 247, 310, 446
HspAI GCGC 1 cut(s) 156
KpnI GGTACC 1 cut(s) 543
Kzo9I GATC 2 cut(s) 283, 562
LmnI GCTCC 1 cut(s) 589
LpnPI CCDG 4 cut(s) 46, 139, 455, 600
MaeI CTAG 7 cut(s) 264, 288, 315, 345, 447, 485, 513
MaeIII GTNAC 2 cut(s) 79, 523
MalI GATC 2 cut(s) 285, 564
MboI GATC 2 cut(s) 283, 562
MboII GAAGA 5 cut(s) 53, 111, 146, 440, 633
MflI RGATCY 1 cut(s) 283
MspI CCGG 3 cut(s) 33, 126, 587
Mva1269I GAATGC 1 cut(s) 586
MwoI GCNNNNNNNGC 1 cut(s) 500
NdeII GATC 2 cut(s) 283, 562
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 3 cut(s) 247, 310, 446
NlaIV GGNNCC 4 cut(s) 31, 285, 541, 591
NmuCI GTSAC 2 cut(s) 79, 523
NspI RCATGY 1 cut(s) 446
PaeI GCATGC 1 cut(s) 446
PceI AGGCCT 1 cut(s) 494
PctI GAATGC 1 cut(s) 586
PkrI GCNGC 1 cut(s) 616
PspN4I GGNNCC 4 cut(s) 31, 285, 541, 591
PspPI GGNCC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 2 cut(s) 51, 541
RsaNI GTAC 2 cut(s) 50, 540
SatI GCNGC 1 cut(s) 615
Sau3AI GATC 2 cut(s) 283, 562
Sau96I GGNCC 1 cut(s) 240
SetI ASST 8 cut(s) 55, 123, 175, 354, 452, 534, 571, 604
SmlI CTYRAG 2 cut(s) 375, 496
SmoI CTYRAG 2 cut(s) 375, 496
SphI GCATGC 1 cut(s) 446
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 1 cut(s) 615
SspMI CTAG 7 cut(s) 264, 288, 315, 345, 447, 485, 513
StuI AGGCCT 1 cut(s) 494
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 2 cut(s) 398, 595
TauI GCSGC 1 cut(s) 617
TscAI CASTG 1 cut(s) 528
TseFI GTSAC 2 cut(s) 79, 523
Tsp45I GTSAC 2 cut(s) 79, 523
TspRI CASTG 1 cut(s) 528
XceI RCATGY 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 474
XspI CTAG 7 cut(s) 264, 288, 315, 345, 447, 485, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.