Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000239.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

481242 .. 481898

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000239.1_g000083.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgtaccctctggagaatctattcttggtaaaggtttctcttggccatgttgttgatgatcaattacataagcatcatgattctttatattacaaggaggatgggaccggaagggaagaaaatgtaccttccggtaattatgaagtgggtgatgtgacttttaatgcaaaaggaagaaataagggggtggataaggtagccaaaggggaagaaaatgtacccttcggaggagctattcttggtaaaggttatggattcttgtccttcaagaatgatgcaagaaaatatggtttgattgatagtggcaaggaaagggccatgttgagaaagaacacttctagggatgtggatgtctcggaccctaaattagatggtgaggccatgaaggctagggacccatctacggccgataacacctctaagaaggttcttgatgacattagacccaccactcatgagtttgagccatcaacttctagagaaaatgaggggaggaataaggaggaagatctacatatgcatggtagctctagggataggagtggtccggtctactcatcactaggcgaggccttgagggctaagaaccctaatgggaccgtgactacccttaggggcactactggaagtctcacctttgatccacctcttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.0

Weight (kDa)

6.0

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	552
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	2 cut(s)	43, 405
AfaI	GTAC	3 cut(s)	5, 126, 219
AfiI	CCNNNNNNNGG	2 cut(s)	227, 403
AgsI	TTSAA	1 cut(s)	268
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	2 cut(s)	233, 528
AluI	AGCT	2 cut(s)	233, 528
Alw26I	GTCTC	2 cut(s)	358, 635
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	5 cut(s)	43, 315, 378, 405, 570
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	6 cut(s)	105, 315, 358, 394, 545, 597
AsuHPI	GGTGA	3 cut(s)	161, 386, 625
AvaII	GGWCC	5 cut(s)	105, 358, 394, 545, 597
AxyI	CCTNAGG	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	45
BarI	GAAGNNNNNNTAC	4 cut(s)	108, 140, 201, 233
BccI	CCATC	4 cut(s)	95, 365, 406, 475
BceAI	ACGGC	1 cut(s)	420
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	358, 635
BfaI	CTAG	5 cut(s)	339, 390, 477, 531, 563
BglI	GCCNNNNNGGC	2 cut(s)	386, 578
BglII	AGATCT	1 cut(s)	508
Bme18I	GGWCC	5 cut(s)	105, 358, 394, 545, 597
BmgT120I	GGNCC	6 cut(s)	105, 315, 358, 394, 545, 597
BmiI	GGNNCC	5 cut(s)	106, 360, 395, 396, 598
BmsI	GCATC	2 cut(s)	82, 265
BpmI	CTGGAG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	595
BsaWI	WCCGGW	3 cut(s)	107, 131, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 403
Bse1I	ACTGG	1 cut(s)	628
Bse21I	CCTNAGG	1 cut(s)	611
BseGI	GGATG	3 cut(s)	106, 349, 355
BseLI	CCNNNNNNNGG	2 cut(s)	227, 403
BseNI	ACTGG	1 cut(s)	628
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	620
BseX3I	CGGCCG	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	5 cut(s)	45, 317, 380, 407, 572
BsiEI	CGRYCG	1 cut(s)	408
BsiSI	CCGG	3 cut(s)	108, 132, 548
BslFI	GGGAC	3 cut(s)	118, 407, 610
BslI	CCNNNNNNNGG	2 cut(s)	227, 403
BsmAI	GTCTC	2 cut(s)	358, 635
BsmFI	GGGAC	3 cut(s)	118, 407, 610
BsnI	GGCC	5 cut(s)	45, 317, 380, 407, 572
Bsp1286I	GDGCHC	1 cut(s)	620
Bsp143I	GATC	3 cut(s)	58, 508, 640
BspANI	GGCC	5 cut(s)	45, 317, 380, 407, 572
BspHI	TCATGA	2 cut(s)	76, 454
BspLI	GGNNCC	5 cut(s)	106, 360, 395, 396, 598
BspPI	GGATC	1 cut(s)	635
BsrI	ACTGG	1 cut(s)	628
BssMI	GATC	3 cut(s)	58, 508, 640
Bst4CI	ACNGT	1 cut(s)	601
BstDEI	CTNAG	3 cut(s)	420, 582, 611
BstF5I	GGATG	3 cut(s)	106, 349, 355
BstKTI	GATC	3 cut(s)	61, 511, 643
BstMAI	GTCTC	2 cut(s)	358, 635
BstMBI	GATC	3 cut(s)	58, 508, 640
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 578
BstSLI	GKGCMC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BstZI	CGGCCG	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	611
BsuRI	GGCC	5 cut(s)	45, 317, 380, 407, 572
BtsCI	GGATG	3 cut(s)	106, 349, 355
CciI	TCATGA	2 cut(s)	76, 454
Cfr13I	GGNCC	6 cut(s)	105, 315, 358, 394, 545, 597
Csp6I	GTAC	3 cut(s)	4, 125, 218
CviAII	CATG	6 cut(s)	47, 77, 319, 382, 455, 521
CviQI	GTAC	3 cut(s)	4, 125, 218
DdeI	CTNAG	3 cut(s)	420, 582, 611
DpnI	GATC	3 cut(s)	60, 510, 642
DpnII	GATC	3 cut(s)	58, 508, 640
EaeI	YGGCCR	2 cut(s)	43, 405
EagI	CGGCCG	1 cut(s)	405
EclXI	CGGCCG	1 cut(s)	405
Eco147I	AGGCCT	1 cut(s)	572
Eco47I	GGWCC	5 cut(s)	105, 358, 394, 545, 597
Eco52I	CGGCCG	1 cut(s)	405
Eco81I	CCTNAGG	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	522
FaeI	CATG	6 cut(s)	50, 80, 322, 385, 458, 524
FaqI	GGGAC	3 cut(s)	118, 407, 610
FatI	CATG	6 cut(s)	46, 76, 318, 381, 454, 520
FauNDI	CATATG	1 cut(s)	516
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	552
FokI	GGATG	3 cut(s)	113, 356, 362
FspBI	CTAG	5 cut(s)	339, 390, 477, 531, 563
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	5 cut(s)	45, 317, 380, 407, 572
HapII	CCGG	3 cut(s)	108, 132, 548
Hin1II	CATG	6 cut(s)	50, 80, 322, 385, 458, 524
HinfI	GANTC	3 cut(s)	16, 80, 255
HpaII	CCGG	3 cut(s)	108, 132, 548
HphI	GGTGA	3 cut(s)	161, 386, 625
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	2 cut(s)	227, 358
Hpy188III	TCNNGA	7 cut(s)	11, 77, 268, 431, 455, 477, 650
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	6 cut(s)	105, 138, 232, 274, 379, 418
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4V	TGCA	3 cut(s)	167, 278, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 578
HpyF3I	CTNAG	3 cut(s)	420, 582, 611
Hsp92II	CATG	6 cut(s)	50, 80, 322, 385, 458, 524
KflI	GGGWCCC	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	58, 508, 640
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	4 cut(s)	121, 145, 561, 609
LweI	GCATC	2 cut(s)	82, 265
MaeI	CTAG	5 cut(s)	339, 390, 477, 531, 563
MaeIII	GTNAC	2 cut(s)	154, 601
MalI	GATC	3 cut(s)	60, 510, 642
MboI	GATC	3 cut(s)	58, 508, 640
MboII	GAAGA	4 cut(s)	128, 186, 221, 518
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	620
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	3 cut(s)	62, 136, 365
MluNI	TGGCCA	1 cut(s)	45
Mox20I	TGGCCA	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	522
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	45
MspI	CCGG	3 cut(s)	108, 132, 548
MwoI	GCNNNNNNNGC	2 cut(s)	386, 578
NdeI	CATATG	1 cut(s)	516
NdeII	GATC	3 cut(s)	58, 508, 640
NlaIII	CATG	6 cut(s)	50, 80, 322, 385, 458, 524
NlaIV	GGNNCC	5 cut(s)	106, 360, 395, 396, 598
NmuCI	GTSAC	2 cut(s)	154, 601
NsiI	ATGCAT	1 cut(s)	522
PagI	TCATGA	2 cut(s)	76, 454
PceI	AGGCCT	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	3 cut(s)	16, 80, 255
PpuMI	RGGWCCY	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	394
PspN4I	GGNNCC	5 cut(s)	106, 360, 395, 396, 598
PspPI	GGNCC	6 cut(s)	105, 315, 358, 394, 545, 597
PspPPI	RGGWCCY	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	3 cut(s)	5, 126, 219
RsaNI	GTAC	3 cut(s)	4, 125, 218
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	58, 508, 640
Sau96I	GGNCC	6 cut(s)	105, 315, 358, 394, 545, 597
SduI	GDGCHC	1 cut(s)	620
SfaNI	GCATC	2 cut(s)	82, 265
SinI	GGWCC	5 cut(s)	105, 358, 394, 545, 597
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	3 cut(s)	62, 136, 365
SseBI	AGGCCT	1 cut(s)	572
SspMI	CTAG	5 cut(s)	339, 390, 477, 531, 563
StuI	AGGCCT	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	601
TasI	AATT	3 cut(s)	62, 136, 365
TfiI	GAWTC	3 cut(s)	16, 80, 255
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseFI	GTSAC	2 cut(s)	154, 601
Tsp45I	GTSAC	2 cut(s)	154, 601
TspDTI	ATGAA	2 cut(s)	156, 398
VpaK11BI	GGWCC	5 cut(s)	105, 358, 394, 545, 597
XbaI	TCTAGA	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	5 cut(s)	339, 390, 477, 531, 563
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.