Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Forward (+)

10370531 .. 10396895

Gene Structure 26365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG054500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTTCTAGTGATATTGTAGATCCTAAGAATGGAAATTTCATGGCTCTTGATAATTTGGGCGAGACTATGAAGGCTAGGGACCCCAATGAAGCCGTGAGTAACCCTAGGGATCCATCAAGTGGTCAAGCATCTACTCAAGCTCAAAAGCCAAGAAAGGGTCCAATTTGTGTGCCTCCTCTAGATATGACGGATTATGAGTTCGCTGGGTATATCAGTCCTAAGATTAGTTATCTCTACAGTTTGAAGCAACTGGATTTGAGTTCCAATAGCATTGGTGATGAAATTCCATACGTCTTACCCCCCAATGCGACTCATATCTGCTTAGTGAAAGCATCACAAGATCGACAAAAAGCATGCCTTGGCTGCACAAGCTGTTCATTAACACAGGACCATTTCATTCCATTTTTGTCTCCCTTGAGTTGCCAGTACAAAATTTTCTTGCATACAGAAAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

152

Amino Acids

16.71

Weight (kDa)

5.86

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AclWI	GGATC	3 cut(s)	17, 107, 120
AcsI	RAATTY	3 cut(s)	37, 285, 435
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	3 cut(s)	32, 122, 158
AgsI	TTSAA	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
AluBI	AGCT	2 cut(s)	143, 375
AluI	AGCT	2 cut(s)	143, 375
Alw26I	GTCTC	2 cut(s)	59, 417
AlwI	GGATC	3 cut(s)	17, 107, 120
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	3 cut(s)	37, 285, 435
AspA2I	CCTAGG	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	82, 161, 391
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	82, 161, 391
AvrII	CCTAGG	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	59, 417
BfaI	CTAG	4 cut(s)	9, 78, 108, 182
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	1 cut(s)	367
BlnI	CCTAGG	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	368
Bme18I	GGWCC	3 cut(s)	82, 161, 391
BmgT120I	GGNCC	3 cut(s)	82, 161, 391
BmiI	GGNNCC	4 cut(s)	83, 84, 114, 162
BmsI	GCATC	2 cut(s)	140, 344
BpuEI	CTTGAG	2 cut(s)	123, 439
BsaJI	CCNNGG	2 cut(s)	107, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 122, 158
Bse1I	ACTGG	2 cut(s)	258, 427
BseDI	CCNNGG	2 cut(s)	107, 361
BseLI	CCNNNNNNNGG	3 cut(s)	32, 122, 158
BseNI	ACTGG	2 cut(s)	258, 427
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	353
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	32, 122, 158
BsmAI	GTCTC	2 cut(s)	59, 417
BsmFI	GGGAC	1 cut(s)	95
Bsp143I	GATC	3 cut(s)	22, 112, 343
BspLI	GGNNCC	4 cut(s)	83, 84, 114, 162
BspPI	GGATC	3 cut(s)	17, 107, 120
BsrI	ACTGG	2 cut(s)	258, 427
BssECI	CCNNGG	2 cut(s)	107, 361
BssMI	GATC	3 cut(s)	22, 112, 343
BssT1I	CCWWGG	2 cut(s)	107, 361
Bst4CI	ACNGT	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	27, 222, 325
BstKTI	GATC	3 cut(s)	25, 115, 346
BstMAI	GTCTC	2 cut(s)	59, 417
BstMBI	GATC	3 cut(s)	22, 112, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 372
BstNSI	RCATGY	1 cut(s)	360
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	22, 112
BstYI	RGATCY	2 cut(s)	22, 112
Cac8I	GCNNGC	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	82, 161, 391
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	2 cut(s)	43, 357
CviJI	RGCY	7 cut(s)	47, 77, 95, 143, 151, 366, 375
CviKI_1	RGCY	7 cut(s)	47, 77, 95, 143, 151, 366, 375
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	3 cut(s)	27, 222, 325
DpnI	GATC	3 cut(s)	24, 114, 345
DpnII	GATC	3 cut(s)	22, 112, 343
Eco130I	CCWWGG	2 cut(s)	107, 361
Eco47I	GGWCC	3 cut(s)	82, 161, 391
EcoO109I	RGGNCCY	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	107, 361
ErhI	CCWWGG	2 cut(s)	107, 361
FaeI	CATG	2 cut(s)	46, 360
FaiI	YATR	9 cut(s)	44, 71, 188, 198, 213, 292, 318, 358, 447
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	42, 356
Fnu4HI	GCNGC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	367
FspBI	CTAG	4 cut(s)	9, 78, 108, 182
GluI	GCNGC	1 cut(s)	367
GsaI	CCCAGC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	46, 360
HinfI	GANTC	1 cut(s)	313
HphI	GGTGA	1 cut(s)	290
Hpy188III	TCNNGA	2 cut(s)	50, 182
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	2 cut(s)	369, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 372
HpyF3I	CTNAG	3 cut(s)	27, 222, 325
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	46, 360
KflI	GGGWCCC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	22, 112, 343
LpnPI	CCDG	4 cut(s)	192, 239, 374, 440
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	140, 344
MaeI	CTAG	4 cut(s)	9, 78, 108, 182
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	24, 114, 345
MboI	GATC	3 cut(s)	22, 112, 343
MflI	RGATCY	2 cut(s)	22, 112
MluCI	AATT	5 cut(s)	37, 55, 165, 285, 435
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	2 cut(s)	186, 189
MseI	TTAA	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	366, 372
NdeII	GATC	3 cut(s)	22, 112, 343
NlaIII	CATG	2 cut(s)	46, 360
NlaIV	GGNNCC	4 cut(s)	83, 84, 114, 162
NspI	RCATGY	1 cut(s)	360
PaeI	GCATGC	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	368
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	4 cut(s)	83, 84, 114, 162
PspPI	GGNCC	3 cut(s)	82, 161, 391
PspPPI	RGGWCCY	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	22, 112
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	1 cut(s)	367
Sau3AI	GATC	3 cut(s)	22, 112, 343
Sau96I	GGNCC	3 cut(s)	82, 161, 391
SchI	GAGTC	1 cut(s)	307
SetI	ASST	3 cut(s)	145, 297, 377
SfaNI	GCATC	2 cut(s)	140, 344
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	3 cut(s)	82, 161, 391
SmlI	CTYRAG	2 cut(s)	138, 418
SmoI	CTYRAG	2 cut(s)	138, 418
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	5 cut(s)	37, 55, 165, 285, 435
SspMI	CTAG	4 cut(s)	9, 78, 108, 182
StyI	CCWWGG	2 cut(s)	107, 361
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	346
TasI	AATT	5 cut(s)	37, 55, 165, 285, 435
TatI	WGTACW	1 cut(s)	429
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseI	GCWGC	1 cut(s)	366
TspDTI	ATGAA	6 cut(s)	31, 86, 105, 297, 369, 388
TspGWI	ACGGA	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	3 cut(s)	82, 161, 391
XapI	RAATTY	3 cut(s)	37, 285, 435
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	1 cut(s)	360
XmaJI	CCTAGG	1 cut(s)	107
XspI	CTAG	4 cut(s)	9, 78, 108, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.