Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012865.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

31316 .. 32092

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012865.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgcctacatcttctagtttccatacaaatcctttatttgatgacgatattgatttgcattcatatggggccaagagggaagaaaatgtacctcttggccatgttgttgatgatcaattgcatacacatcatgattctttttatcataaggaagatgggaccgaaagggaagaaaatgtaccttccggtaaatatggagtgggtgatgtgactttgaatgccaacggaagaaataagggggtggataaggtagccggaggggaagaaaatgtaccctctggagaagctattcttggtaaaggttatggtttcttgtcctttgagaacaatgcaagcaaatatggtttgattgatagtggcaaagaaagggccatgagggatgaggatgtctcggaccctaaattagaaggtgaggccatgaaggctagggacccatctacggccgataacacctctaggaaggttcttgatgacattagacccaccactcatgagtttgagccatctacttctagagaaaatgaggggaggaataaggagaaagatttacatatgcatggtagctctagggataggagttgtccggtctattcatcactaggcgaggccttgagggctaagaaccctagtgggactgtgactacccttaggggcactactggaagtctcacctttgatccacctcttgatttgaatatattggagccaccacttccttatcctaatgccgcaagaagagataattcaaagaagggtaagaagaagagtgtggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.26

Weight (kDa)

5.6

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	729
AclWI	GGATC	1 cut(s)	671
AcoI	YGGCCR	2 cut(s)	97, 441
AfaI	GTAC	3 cut(s)	90, 180, 273
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	217, 694, 747
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	2 cut(s)	287, 564
AluI	AGCT	2 cut(s)	287, 564
Alw26I	GTCTC	2 cut(s)	394, 671
AlwI	GGATC	1 cut(s)	671
AoxI	GGCC	6 cut(s)	69, 97, 369, 414, 441, 606
Asp700I	GAANNNNTTC	1 cut(s)	288
AspS9I	GGNCC	5 cut(s)	69, 159, 369, 394, 430
AsuHPI	GGTGA	3 cut(s)	215, 422, 661
AvaII	GGWCC	3 cut(s)	159, 394, 430
AxyI	CCTNAGG	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	99
BarI	GAAGNNNNNNTAC	6 cut(s)	72, 104, 162, 194, 255, 287
BccI	CCATC	3 cut(s)	149, 442, 511
BceAI	ACGGC	1 cut(s)	456
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	394, 671
BfaI	CTAG	7 cut(s)	15, 426, 456, 513, 567, 599, 627
BglI	GCCNNNNNGGC	2 cut(s)	422, 614
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme18I	GGWCC	3 cut(s)	159, 394, 430
BmgT120I	GGNCC	5 cut(s)	69, 159, 369, 394, 430
BmiI	GGNNCC	6 cut(s)	70, 160, 396, 431, 432, 705
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpmI	CTGGAG	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	631
BsaWI	WCCGGW	2 cut(s)	185, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	664
Bse21I	CCTNAGG	1 cut(s)	647
BseGI	GGATG	2 cut(s)	385, 391
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseNI	ACTGG	1 cut(s)	664
BseSI	GKGCMC	1 cut(s)	656
BseX3I	CGGCCG	1 cut(s)	441
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	6 cut(s)	71, 99, 371, 416, 443, 608
BsiEI	CGRYCG	1 cut(s)	444
BsiSI	CCGG	3 cut(s)	186, 255, 584
BslFI	GGGAC	3 cut(s)	172, 443, 646
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	394, 671
BsmFI	GGGAC	3 cut(s)	172, 443, 646
BsmI	GAATGC	2 cut(s)	58, 223
BsnI	GGCC	6 cut(s)	71, 99, 371, 416, 443, 608
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	2 cut(s)	112, 676
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	6 cut(s)	71, 99, 371, 416, 443, 608
BspHI	TCATGA	2 cut(s)	130, 490
BspLI	GGNNCC	6 cut(s)	70, 160, 396, 431, 432, 705
BspPI	GGATC	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	664
BssMI	GATC	2 cut(s)	112, 676
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	2 cut(s)	730, 758
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	618, 647
BstF5I	GGATG	2 cut(s)	385, 391
BstKTI	GATC	2 cut(s)	115, 679
BstMAI	GTCTC	2 cut(s)	394, 671
BstMBI	GATC	2 cut(s)	112, 676
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 614
BstSLI	GKGCMC	1 cut(s)	656
BstZI	CGGCCG	1 cut(s)	441
Bsu36I	CCTNAGG	1 cut(s)	647
BsuRI	GGCC	6 cut(s)	71, 99, 371, 416, 443, 608
BtsCI	GGATG	2 cut(s)	385, 391
Cac8I	GCNNGC	1 cut(s)	334
CciI	TCATGA	2 cut(s)	130, 490
Cfr13I	GGNCC	5 cut(s)	69, 159, 369, 394, 430
Csp6I	GTAC	3 cut(s)	89, 179, 272
CviAII	CATG	6 cut(s)	101, 131, 373, 418, 491, 557
CviQI	GTAC	3 cut(s)	89, 179, 272
DdeI	CTNAG	2 cut(s)	618, 647
DpnI	GATC	2 cut(s)	114, 678
DpnII	GATC	2 cut(s)	112, 676
EaeI	YGGCCR	2 cut(s)	97, 441
EagI	CGGCCG	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	730, 758
EarI	CTCTTC	2 cut(s)	730, 758
EclXI	CGGCCG	1 cut(s)	441
Eco147I	AGGCCT	1 cut(s)	608
Eco47I	GGWCC	3 cut(s)	159, 394, 430
Eco52I	CGGCCG	1 cut(s)	441
Eco81I	CCTNAGG	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	558
FaeI	CATG	6 cut(s)	104, 134, 376, 421, 494, 560
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	3 cut(s)	172, 443, 646
FatI	CATG	6 cut(s)	100, 130, 372, 417, 490, 556
FauNDI	CATATG	2 cut(s)	64, 552
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	2 cut(s)	392, 398
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	7 cut(s)	15, 426, 456, 513, 567, 599, 627
GluI	GCNGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	6 cut(s)	71, 99, 371, 416, 443, 608
HapII	CCGG	3 cut(s)	186, 255, 584
Hin1II	CATG	6 cut(s)	104, 134, 376, 421, 494, 560
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	3 cut(s)	186, 255, 584
HphI	GGTGA	3 cut(s)	215, 422, 661
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	6 cut(s)	131, 279, 467, 491, 513, 686
HpyAV	CCTTC	5 cut(s)	192, 401, 415, 454, 745
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4V	TGCA	4 cut(s)	58, 121, 332, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 614
HpyF3I	CTNAG	2 cut(s)	618, 647
Hsp92II	CATG	6 cut(s)	104, 134, 376, 421, 494, 560
KflI	GGGWCCC	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	112, 676
LmnI	GCTCC	1 cut(s)	703
LpnPI	CCDG	5 cut(s)	199, 264, 268, 597, 645
MaeI	CTAG	7 cut(s)	15, 426, 456, 513, 567, 599, 627
MaeIII	GTNAC	2 cut(s)	208, 637
MalI	GATC	2 cut(s)	114, 678
MboI	GATC	2 cut(s)	112, 676
MboII	GAAGA	9 cut(s)	3, 92, 164, 182, 240, 275, 747, 772, 775
MfeI	CAATTG	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	656
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	3 cut(s)	116, 401, 742
MluNI	TGGCCA	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	775
MslI	CAYNNNNRTG	2 cut(s)	63, 555
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	3 cut(s)	186, 255, 584
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	2 cut(s)	58, 223
MwoI	GCNNNNNNNGC	2 cut(s)	422, 614
NdeI	CATATG	2 cut(s)	64, 552
NdeII	GATC	2 cut(s)	112, 676
NlaIII	CATG	6 cut(s)	104, 134, 376, 421, 494, 560
NlaIV	GGNNCC	6 cut(s)	70, 160, 396, 431, 432, 705
NmuCI	GTSAC	2 cut(s)	208, 637
NsiI	ATGCAT	1 cut(s)	558
PagI	TCATGA	2 cut(s)	130, 490
PceI	AGGCCT	1 cut(s)	608
PctI	GAATGC	2 cut(s)	58, 223
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	730
PpuMI	RGGWCCY	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	430
PspN4I	GGNNCC	6 cut(s)	70, 160, 396, 431, 432, 705
PspPI	GGNCC	5 cut(s)	69, 159, 369, 394, 430
PspPPI	RGGWCCY	1 cut(s)	430
RsaI	GTAC	3 cut(s)	90, 180, 273
RsaNI	GTAC	3 cut(s)	89, 179, 272
RseI	CAYNNNNRTG	2 cut(s)	63, 555
SaqAI	TTAA	1 cut(s)	775
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	2 cut(s)	112, 676
Sau96I	GGNCC	5 cut(s)	69, 159, 369, 394, 430
SduI	GDGCHC	1 cut(s)	656
SinI	GGWCC	3 cut(s)	159, 394, 430
SmiMI	CAYNNNNRTG	2 cut(s)	63, 555
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	3 cut(s)	116, 401, 742
SseBI	AGGCCT	1 cut(s)	608
SsiI	CCGC	1 cut(s)	729
SspMI	CTAG	7 cut(s)	15, 426, 456, 513, 567, 599, 627
StuI	AGGCCT	1 cut(s)	608
TaaI	ACNGT	1 cut(s)	637
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	3 cut(s)	116, 401, 742
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	775
Tru9I	TTAA	1 cut(s)	775
TseFI	GTSAC	2 cut(s)	208, 637
Tsp45I	GTSAC	2 cut(s)	208, 637
TspDTI	ATGAA	3 cut(s)	51, 434, 582
TspGWI	ACGGA	1 cut(s)	240
VpaK11BI	GGWCC	3 cut(s)	159, 394, 430
XbaI	TCTAGA	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	7 cut(s)	15, 426, 456, 513, 567, 599, 627
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.