Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017745.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

1342 .. 2244

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017745.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgggagagtttctcaaggttcaaacttctactaatgcggataccaagcaaagcatctcttcactagttcaagggtatcaaactctacaacaaagcgtggctacattagagggaaaggtatatgataatcatgtttacgtgcctacatcttctagtttccacacaaatcctttatttgatgacgatgttgatttgcattcatatgggcccaaaagggaagaaaatgtacctcttggccatgtttttaatgatcaattacataagcctcatgattctttatattacaaggaggatgggaccggaatggaagaaaatgtacctttcggtaaatatggagtgggtgatgtgactttgaatgccaaaggaagaaataagggggtggataaggtagccggaggggaagaaaatgtaccctccggagaagctattcttggtaaaggttatggtttcttgtcctttgagaacaatgcaagcaaatatgggttgattgatagtggcaaggaaagtgctttattgagaaagaagacttttaaggatgaggatgtcttggaccctaaattagatggtgaggccatgaaggctagggacccatctacggccgataacgcctctaggaaggttcttgatgacattagacccaccactcatgagtttgagccatctacttctagagaaaatgaggggaggaataaggaggaagatttacatatgcatggtagctctagggataggagttgtccggtctactcatcacttggcgaggcctcactactacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.53

Weight (kDa)

5.15

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	744
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	1 cut(s)	38
AcoI	YGGCCR	2 cut(s)	235, 597
AfaI	GTAC	3 cut(s)	228, 318, 411
AfiI	CCNNNNNNNGG	1 cut(s)	595
AgsI	TTSAA	3 cut(s)	23, 71, 355
AhlI	ACTAGT	1 cut(s)	64
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	2 cut(s)	425, 720
AluI	AGCT	2 cut(s)	425, 720
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	5 cut(s)	206, 235, 570, 597, 762
ApaI	GGGCCC	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	426
AspS9I	GGNCC	5 cut(s)	206, 207, 297, 550, 586
AsuHPI	GGTGA	2 cut(s)	353, 578
AvaII	GGWCC	3 cut(s)	297, 550, 586
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	6 cut(s)	210, 242, 300, 332, 393, 425
BbsI	GAAGAC	1 cut(s)	530
BccI	CCATC	4 cut(s)	287, 557, 598, 667
BceAI	ACGGC	1 cut(s)	612
BciVI	GTATCC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	250
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	6 cut(s)	65, 153, 582, 612, 669, 723
BfuI	GTATCC	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	578
Bme18I	GGWCC	3 cut(s)	297, 550, 586
BmgT120I	GGNCC	5 cut(s)	206, 207, 297, 550, 586
BmiI	GGNNCC	5 cut(s)	208, 298, 552, 587, 588
BmsI	GCATC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	530
BplI	GAGNNNNNCTC	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	139
BsaWI	WCCGGW	3 cut(s)	299, 416, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
BseAI	TCCGGA	1 cut(s)	416
BseGI	GGATG	3 cut(s)	298, 541, 547
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	210
BseX3I	CGGCCG	1 cut(s)	597
Bsh1285I	CGRYCG	1 cut(s)	600
BshFI	GGCC	5 cut(s)	208, 237, 572, 599, 764
BsiEI	CGRYCG	1 cut(s)	600
BsiSI	CCGG	4 cut(s)	300, 393, 417, 740
BslFI	GGGAC	2 cut(s)	310, 599
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmFI	GGGAC	2 cut(s)	310, 599
BsmI	GAATGC	2 cut(s)	196, 361
BsnI	GGCC	5 cut(s)	208, 237, 572, 599, 764
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp13I	TCCGGA	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	5 cut(s)	208, 237, 572, 599, 764
BspEI	TCCGGA	1 cut(s)	416
BspHI	TCATGA	2 cut(s)	268, 646
BspLI	GGNNCC	5 cut(s)	208, 298, 552, 587, 588
BssMI	GATC	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	472
BstF5I	GGATG	3 cut(s)	298, 541, 547
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMCI	CGRYCG	1 cut(s)	600
BstMWI	GCNNNNNNNGC	2 cut(s)	578, 605
BstSLI	GKGCMC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	530
BstZI	CGGCCG	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	5 cut(s)	208, 237, 572, 599, 764
BtsCI	GGATG	3 cut(s)	298, 541, 547
Cac8I	GCNNGC	1 cut(s)	472
CciI	TCATGA	2 cut(s)	268, 646
Cfr13I	GGNCC	5 cut(s)	206, 207, 297, 550, 586
Csp6I	GTAC	3 cut(s)	227, 317, 410
CviAII	CATG	6 cut(s)	131, 239, 269, 574, 647, 713
CviQI	GTAC	3 cut(s)	227, 317, 410
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	235, 597
EagI	CGGCCG	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	597
Eco147I	AGGCCT	1 cut(s)	764
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	3 cut(s)	297, 550, 586
Eco52I	CGGCCG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	6 cut(s)	134, 242, 272, 577, 650, 716
FalI	AAGNNNNNCTT	4 cut(s)	43, 75, 414, 446
FaqI	GGGAC	2 cut(s)	310, 599
FatI	CATG	6 cut(s)	130, 238, 268, 573, 646, 712
FauNDI	CATATG	2 cut(s)	202, 708
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	744
FokI	GGATG	3 cut(s)	305, 548, 554
FriOI	GRGCYC	1 cut(s)	210
FspBI	CTAG	6 cut(s)	65, 153, 582, 612, 669, 723
HaeIII	GGCC	5 cut(s)	208, 237, 572, 599, 764
HapII	CCGG	4 cut(s)	300, 393, 417, 740
Hin1II	CATG	6 cut(s)	134, 242, 272, 577, 650, 716
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	4 cut(s)	300, 393, 417, 740
HphI	GGTGA	2 cut(s)	353, 578
Hpy166II	GTNNAC	2 cut(s)	136, 745
Hpy188III	TCNNGA	5 cut(s)	269, 417, 623, 647, 669
Hpy8I	GTNNAC	2 cut(s)	136, 745
HpyAV	CCTTC	2 cut(s)	571, 610
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	196, 470, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	578, 605
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	134, 242, 272, 577, 650, 716
KflI	GGGWCCC	1 cut(s)	586
Kpn2I	TCCGGA	1 cut(s)	416
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	4 cut(s)	313, 406, 430, 753
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	6 cut(s)	65, 153, 582, 612, 669, 723
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	8 cut(s)	51, 141, 230, 320, 378, 413, 535, 710
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	2 cut(s)	254, 557
MluNI	TGGCCA	1 cut(s)	237
Mox20I	TGGCCA	1 cut(s)	237
Mph1103I	ATGCAT	1 cut(s)	714
MroI	TCCGGA	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	2 cut(s)	246, 531
MslI	CAYNNNNRTG	2 cut(s)	201, 711
Msp20I	TGGCCA	1 cut(s)	237
MspI	CCGG	4 cut(s)	300, 393, 417, 740
Mva1269I	GAATGC	2 cut(s)	196, 361
MwoI	GCNNNNNNNGC	2 cut(s)	578, 605
NdeI	CATATG	2 cut(s)	202, 708
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	6 cut(s)	134, 242, 272, 577, 650, 716
NlaIV	GGNNCC	5 cut(s)	208, 298, 552, 587, 588
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	714
PagI	TCATGA	2 cut(s)	268, 646
PceI	AGGCCT	1 cut(s)	764
PctI	GAATGC	2 cut(s)	196, 361
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	586
PspN4I	GGNNCC	5 cut(s)	208, 298, 552, 587, 588
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	5 cut(s)	206, 207, 297, 550, 586
PspPPI	RGGWCCY	1 cut(s)	586
RsaI	GTAC	3 cut(s)	228, 318, 411
RsaNI	GTAC	3 cut(s)	227, 317, 410
RseI	CAYNNNNRTG	2 cut(s)	201, 711
SaqAI	TTAA	2 cut(s)	246, 531
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	5 cut(s)	206, 207, 297, 550, 586
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	63
SinI	GGWCC	3 cut(s)	297, 550, 586
SmiMI	CAYNNNNRTG	2 cut(s)	201, 711
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	2 cut(s)	254, 557
SseBI	AGGCCT	1 cut(s)	764
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	6 cut(s)	65, 153, 582, 612, 669, 723
StuI	AGGCCT	1 cut(s)	764
TaiI	ACGT	1 cut(s)	141
TasI	AATT	2 cut(s)	254, 557
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	246, 531
Tru9I	TTAA	2 cut(s)	246, 531
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	189, 590
VpaK11BI	GGWCC	3 cut(s)	297, 550, 586
XbaI	TCTAGA	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	6 cut(s)	65, 153, 582, 612, 669, 723
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.