Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002385.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

23168 .. 23641

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002385.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgttgatttgcattcatatgggggtcaagagggaagaaaatgttcctcttggccatgttgttgatgatcaattgcatacgcattatgattctttttatcataaggaggatgggaccggaaggaaagaaaatgtaccttccggtaaatatggagtgggtgatgtgactttgaatgccaaaggaagaaataagggggtggataaggtatctagaggggaagaaaatgtatcctccggagaagctattcttggtaaaggttatggtttcttatcctttgagaacaatacaagcaaatatgggttgattgatagtggcaaggaaagagatttgttgagaaagaagacttctaggtatgaggatgtctcagaccctaaattagatggtgaggccatgaaggctagggacccatctaaggccgatgacacctctagaaaggttcttgatgacattagacccaccactcatgatttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.49

Weight (kDa)

6.31

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	52
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	367
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	3 cut(s)	52, 387, 414
Asp700I	GAANNNNTTC	2 cut(s)	42, 243
AspS9I	GGNCC	2 cut(s)	114, 403
AsuHPI	GGTGA	2 cut(s)	170, 395
AvaII	GGWCC	2 cut(s)	114, 403
BalI	TGGCCA	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	347
BccI	CCATC	3 cut(s)	104, 374, 415
BciVI	GTATCC	1 cut(s)	238
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	4 cut(s)	210, 348, 399, 429
BfuI	GTATCC	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	395
Bme18I	GGWCC	2 cut(s)	114, 403
BmgT120I	GGNCC	2 cut(s)	114, 403
BmiI	GGNNCC	3 cut(s)	115, 404, 405
BpiI	GAAGAC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BsaWI	WCCGGW	3 cut(s)	116, 140, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	233
BseGI	GGATG	2 cut(s)	115, 364
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	54, 389, 416
BsiSI	CCGG	3 cut(s)	117, 141, 234
BslFI	GGGAC	2 cut(s)	127, 416
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	127, 416
BsmI	GAATGC	2 cut(s)	12, 178
BsnI	GGCC	3 cut(s)	54, 389, 416
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	67
BspANI	GGCC	3 cut(s)	54, 389, 416
BspCNI	CTCAG	1 cut(s)	377
BspEI	TCCGGA	1 cut(s)	233
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	115, 404, 405
BssMI	GATC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	364, 411
BstF5I	GGATG	2 cut(s)	115, 364
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	347
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	54, 389, 416
BtsCI	GGATG	2 cut(s)	115, 364
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	114, 403
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	3 cut(s)	56, 391, 464
CviJI	RGCY	5 cut(s)	54, 242, 389, 398, 416
CviKI_1	RGCY	5 cut(s)	54, 242, 389, 398, 416
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	2 cut(s)	364, 411
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	52
Eco47I	GGWCC	2 cut(s)	114, 403
EcoO109I	RGGNCCY	1 cut(s)	403
FaeI	CATG	3 cut(s)	59, 394, 467
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	2 cut(s)	127, 416
FatI	CATG	3 cut(s)	55, 390, 463
FauNDI	CATATG	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	67
FokI	GGATG	2 cut(s)	122, 371
FspBI	CTAG	4 cut(s)	210, 348, 399, 429
HaeIII	GGCC	3 cut(s)	54, 389, 416
HapII	CCGG	3 cut(s)	117, 141, 234
Hin1II	CATG	3 cut(s)	59, 394, 467
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	3 cut(s)	117, 141, 234
HphI	GGTGA	2 cut(s)	170, 395
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	6 cut(s)	28, 210, 234, 429, 440, 464
HpyAV	CCTTC	3 cut(s)	114, 147, 388
HpyCH4V	TGCA	2 cut(s)	12, 76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	364, 411
Hsp92II	CATG	3 cut(s)	59, 394, 467
KflI	GGGWCCC	1 cut(s)	403
Kpn2I	TCCGGA	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	3 cut(s)	130, 154, 247
MaeI	CTAG	4 cut(s)	210, 348, 399, 429
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	4 cut(s)	47, 195, 230, 352
MfeI	CAATTG	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	2 cut(s)	71, 374
MluNI	TGGCCA	1 cut(s)	54
MnlI	CCTC	8 cut(s)	24, 57, 100, 206, 241, 349, 379, 436
Mox20I	TGGCCA	1 cut(s)	54
MroI	TCCGGA	1 cut(s)	233
MroXI	GAANNNNTTC	2 cut(s)	42, 243
MscI	TGGCCA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	54
MspI	CCGG	3 cut(s)	117, 141, 234
MunI	CAATTG	1 cut(s)	71
Mva1269I	GAATGC	2 cut(s)	12, 178
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	3 cut(s)	59, 394, 467
NlaIV	GGNNCC	3 cut(s)	115, 404, 405
NmuCI	GTSAC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	463
PctI	GAATGC	2 cut(s)	12, 178
PdmI	GAANNNNTTC	2 cut(s)	42, 243
PfeI	GAWTC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
PspN4I	GGNNCC	3 cut(s)	115, 404, 405
PspPI	GGNCC	2 cut(s)	114, 403
PspPPI	RGGWCCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	17
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	2 cut(s)	114, 403
SetI	ASST	7 cut(s)	139, 207, 244, 259, 353, 428, 438
SinI	GGWCC	2 cut(s)	114, 403
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	71, 374
SspMI	CTAG	4 cut(s)	210, 348, 399, 429
TasI	AATT	2 cut(s)	71, 374
TfiI	GAWTC	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	5, 407
VpaK11BI	GGWCC	2 cut(s)	114, 403
XbaI	TCTAGA	2 cut(s)	209, 428
XmnI	GAANNNNTTC	2 cut(s)	42, 243
XspI	CTAG	4 cut(s)	210, 348, 399, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.