Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005670.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Forward (+)

21306 .. 22564

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005670.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atggcctcttctatgcactcaagaccacaagggtctcttcctagcaatacggtgcctaatcctcgccacaatgagcaagcaaatgctatatctattcttagaagtggaaaggtctatgacaataaggtacgcatgccccaaacttcatctcctactcccttgcatgtgtatgataatatgtatgacccatattcctcctcatcccattcgtataatggttatgttccctctcctatgcatgctcccaactccctcatttcaaattctagagatgagtacgttatggtagatgattgctctagtgatagtgattttgaattgattgatggtgccacgagggaagaaaatgtacctcgtggcaatgttgaaaattctttaaatatgcatgattttgattcaaaggcggatgagagtaggggggaagaaaatgtaccccctgaaattggagtggatgatgtggctttgtatacaaaaggaagaaataagggggtggataaggaagccggggaggaagaaaatgtacttcccggaggtgacaaggaaggaacacctctttatctcattctacatcttcaaagtctcattgatcatatggggagcaataaggtggaagaccgggggagaaataaggtggaagactcttctaagagcaagcctcatgctaaaagttcggagtctacatcaaaggggagaaataaggaggaagattctcatatgactagtggaggtcctaaggataggagtactcctgtctattcttcactaggggaggccgtgttggctaagaatcctagtgggaccgtgagcacccttaagggtgctatgggtaacttgaaatttaccccaccattagttttctctcaagagccgattttgccatatcctaatgtgaagaggatgcaagacctcaagaagaagaaagagcgtcaaaatgtggagttcatggaattgttcaagaaggtgaatattaatattccacttttggatgccattaagcaagtaccctcatatgccaagtacttgaaggaattgtgcacaaacaagagaaggtttaaggatgatgagaatgtttatcttagagaggaggcctcatccgtgattcaacgaaggcttcctcctaaacttggagatcccggatgctttaccgtcccttgtaccattggattgggaattttgataaggcacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

396

Amino Acids

44.02

Weight (kDa)

6.44

Isoelectric Point (pI)

61.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	52, 329
AccI	GTMKAC	2 cut(s)	467, 677
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	1 cut(s)	1124
AcsI	RAATTY	4 cut(s)	262, 370, 836, 1170
AfaI	GTAC	9 cut(s)	129, 278, 351, 432, 522, 745, 1002, 1019, 1156
AfiI	CCNNNNNNNGG	2 cut(s)	443, 1124
AflII	CTTAAG	1 cut(s)	812
AgsI	TTSAA	9 cut(s)	261, 317, 368, 399, 575, 835, 955, 1024, 1103
AhlI	ACTAGT	1 cut(s)	719
Alw21I	GWGCWC	2 cut(s)	809, 1037
Alw26I	GTCTC	2 cut(s)	39, 584
Alw44I	GTGCAC	1 cut(s)	1033
AlwI	GGATC	1 cut(s)	1124
AoxI	GGCC	3 cut(s)	3, 771, 1086
ApaLI	GTGCAC	1 cut(s)	1033
ApoI	RAATTY	4 cut(s)	262, 370, 836, 1170
AseI	ATTAAT	1 cut(s)	969
AspS9I	GGNCC	2 cut(s)	728, 798
AsuC2I	CCSGG	4 cut(s)	505, 528, 617, 1134
AsuHPI	GGTGA	2 cut(s)	545, 973
AvaII	GGWCC	2 cut(s)	728, 798
AxyI	CCTNAGG	1 cut(s)	732
BaeGI	GKGCMC	1 cut(s)	1037
BanI	GGYRCC	2 cut(s)	52, 329
BarI	GAAGNNNNNNTAC	6 cut(s)	333, 365, 414, 446, 504, 536
BauI	CACGAG	2 cut(s)	334, 354
BbsI	GAAGAC	2 cut(s)	618, 642
Bbv12I	GWGCWC	2 cut(s)	809, 1037
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	758
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	4 cut(s)	505, 528, 617, 1134
BcoDI	GTCTC	2 cut(s)	39, 584
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	7 cut(s)	42, 267, 300, 720, 764, 792, 1189
BfrI	CTTAAG	1 cut(s)	812
BglI	GCCNNNNNGGC	1 cut(s)	779
BmcAI	AGTACT	2 cut(s)	745, 1019
Bme1390I	CCNGG	4 cut(s)	505, 528, 617, 1134
Bme18I	GGWCC	2 cut(s)	728, 798
BmgT120I	GGNCC	2 cut(s)	728, 798
BmiI	GGNNCC	3 cut(s)	54, 331, 799
BmrFI	CCNGG	4 cut(s)	505, 528, 617, 1134
BmsI	GCATC	3 cut(s)	888, 976, 1127
BpiI	GAAGAC	2 cut(s)	618, 642
BplI	GAGNNNNNCTC	4 cut(s)	640, 672, 1073, 1105
BpuEI	CTTGAG	3 cut(s)	4, 846, 893
BpuMI	CCSGG	4 cut(s)	505, 528, 617, 1134
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	504, 616
BsaXI	ACNNNNNCTCC	4 cut(s)	133, 163, 761, 791
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 1124
Bse21I	CCTNAGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	504, 616
BseGI	GGATG	8 cut(s)	200, 412, 457, 903, 991, 1063, 1091, 1142
BseLI	CCNNNNNNNGG	2 cut(s)	443, 1124
BseMI	GCAATG	1 cut(s)	367
BseRI	GAGGAG	2 cut(s)	187, 1097
BseSI	GKGCMC	1 cut(s)	1037
BshFI	GGCC	3 cut(s)	5, 773, 1088
BshNI	GGYRCC	2 cut(s)	52, 329
BsiHKAI	GWGCWC	2 cut(s)	809, 1037
BsiSI	CCGG	4 cut(s)	504, 528, 616, 1134
BslFI	GGGAC	2 cut(s)	811, 1133
BslI	CCNNNNNNNGG	2 cut(s)	443, 1124
BsmAI	GTCTC	2 cut(s)	39, 584
BsmFI	GGGAC	2 cut(s)	811, 1133
BsnI	GGCC	3 cut(s)	5, 773, 1088
Bso31I	GGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	809, 1037
Bsp143I	GATC	2 cut(s)	586, 1129
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	3 cut(s)	5, 773, 1088
BspLI	GGNNCC	3 cut(s)	54, 331, 799
BspPI	GGATC	1 cut(s)	1124
BspT107I	GGYRCC	2 cut(s)	52, 329
BspTI	CTTAAG	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	504, 616
BssMI	GATC	2 cut(s)	586, 1129
BssNAI	GTATAC	1 cut(s)	468
BssSI	CACGAG	2 cut(s)	334, 354
Bst1107I	GTATAC	1 cut(s)	468
Bst2BI	CACGAG	2 cut(s)	334, 354
Bst4CI	ACNGT	3 cut(s)	52, 802, 1147
Bst6I	CTCTTC	4 cut(s)	13, 42, 646, 887
BstAFI	CTTAAG	1 cut(s)	812
BstC8I	GCNNGC	4 cut(s)	78, 134, 240, 653
BstDEI	CTNAG	5 cut(s)	98, 645, 732, 783, 1076
BstF5I	GGATG	8 cut(s)	200, 412, 457, 903, 991, 1063, 1091, 1142
BstKTI	GATC	2 cut(s)	589, 1132
BstMAI	GTCTC	2 cut(s)	39, 584
BstMBI	GATC	2 cut(s)	586, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	779, 874
BstNSI	RCATGY	3 cut(s)	136, 167, 242
BstSCI	CCNGG	4 cut(s)	503, 526, 615, 1132
BstSLI	GKGCMC	1 cut(s)	1037
BstV2I	GAAGAC	2 cut(s)	618, 642
BstX2I	RGATCY	1 cut(s)	1129
BstXI	CCANNNNNNTGG	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	1129
BstZ17I	GTATAC	1 cut(s)	468
Bsu36I	CCTNAGG	1 cut(s)	732
BsuRI	GGCC	3 cut(s)	5, 773, 1088
BtsCI	GGATG	8 cut(s)	200, 412, 457, 903, 991, 1063, 1091, 1142
Cac8I	GCNNGC	4 cut(s)	78, 134, 240, 653
Cfr13I	GGNCC	2 cut(s)	728, 798
CseI	GACGC	1 cut(s)	914
Csp6I	GTAC	9 cut(s)	128, 277, 350, 431, 521, 744, 1001, 1018, 1155
CviAII	CATG	6 cut(s)	133, 164, 239, 386, 659, 943
CviJI	RGCY	9 cut(s)	5, 461, 503, 655, 773, 782, 868, 1088, 1111
CviKI_1	RGCY	9 cut(s)	5, 461, 503, 655, 773, 782, 868, 1088, 1111
CviQI	GTAC	9 cut(s)	128, 277, 350, 431, 521, 744, 1001, 1018, 1155
DdeI	CTNAG	5 cut(s)	98, 645, 732, 783, 1076
DpnI	GATC	2 cut(s)	588, 1131
DpnII	GATC	2 cut(s)	586, 1129
DraI	TTTAAA	1 cut(s)	378
Eam1104I	CTCTTC	4 cut(s)	13, 42, 646, 887
EarI	CTCTTC	4 cut(s)	13, 42, 646, 887
EciI	GGCGGA	1 cut(s)	419
Eco147I	AGGCCT	1 cut(s)	1088
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	728, 798
Eco81I	CCTNAGG	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	728
EcoT22I	ATGCAT	2 cut(s)	240, 387
FaeI	CATG	6 cut(s)	136, 167, 242, 389, 662, 946
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	2 cut(s)	811, 1133
FatI	CATG	6 cut(s)	132, 163, 238, 385, 658, 942
FauNDI	CATATG	3 cut(s)	591, 714, 1009
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	2 cut(s)	467, 677
FokI	GGATG	8 cut(s)	187, 419, 464, 910, 998, 1070, 1078, 1149
FspBI	CTAG	7 cut(s)	42, 267, 300, 720, 764, 792, 1189
HaeIII	GGCC	3 cut(s)	5, 773, 1088
HapII	CCGG	4 cut(s)	504, 528, 616, 1134
HgaI	GACGC	1 cut(s)	914
Hin1II	CATG	6 cut(s)	136, 167, 242, 389, 662, 946
HinfI	GANTC	6 cut(s)	395, 638, 674, 707, 787, 1099
HpaII	CCGG	4 cut(s)	504, 528, 616, 1134
HphI	GGTGA	2 cut(s)	545, 973
Hpy166II	GTNNAC	3 cut(s)	468, 678, 1035
Hpy188I	TCNGA	1 cut(s)	673
Hpy188III	TCNNGA	5 cut(s)	21, 267, 863, 910, 955
Hpy8I	GTNNAC	3 cut(s)	468, 678, 1035
HpyAV	CCTTC	5 cut(s)	536, 952, 1018, 1041, 1101
HpyCH4III	ACNGT	3 cut(s)	52, 802, 1147
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	16, 163, 238, 385, 901, 1035
HpyF10VI	GCNNNNNNNGC	2 cut(s)	779, 874
HpyF3I	CTNAG	5 cut(s)	98, 645, 732, 783, 1076
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	6 cut(s)	136, 167, 242, 389, 662, 946
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	586, 1129
LmnI	GCTCC	2 cut(s)	247, 597
LpnPI	CCDG	6 cut(s)	450, 517, 541, 629, 762, 1147
LweI	GCATC	3 cut(s)	888, 976, 1127
MaeI	CTAG	7 cut(s)	42, 267, 300, 720, 764, 792, 1189
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	533, 827
MalI	GATC	2 cut(s)	588, 1131
MboI	GATC	2 cut(s)	586, 1129
MflI	RGATCY	1 cut(s)	1129
MhlI	GDGCHC	2 cut(s)	809, 1037
MluCI	AATT	8 cut(s)	262, 317, 370, 441, 836, 947, 1028, 1170
MlyI	GAGTC	2 cut(s)	632, 683
Mph1103I	ATGCAT	2 cut(s)	240, 387
MseI	TTAA	5 cut(s)	377, 813, 969, 993, 1053
MslI	CAYNNNNRTG	1 cut(s)	168
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	4 cut(s)	504, 528, 616, 1134
MspR9I	CCNGG	4 cut(s)	505, 528, 617, 1134
MwoI	GCNNNNNNNGC	2 cut(s)	779, 874
NciI	CCSGG	4 cut(s)	505, 528, 617, 1134
NdeI	CATATG	3 cut(s)	591, 714, 1009
NdeII	GATC	2 cut(s)	586, 1129
NlaIII	CATG	6 cut(s)	136, 167, 242, 389, 662, 946
NlaIV	GGNNCC	3 cut(s)	54, 331, 799
NmuCI	GTSAC	1 cut(s)	533
NsiI	ATGCAT	2 cut(s)	240, 387
NspI	RCATGY	3 cut(s)	136, 167, 242
PaeI	GCATGC	2 cut(s)	136, 242
PceI	AGGCCT	1 cut(s)	1088
PfeI	GAWTC	4 cut(s)	395, 707, 787, 1099
PfoI	TCCNGGA	2 cut(s)	526, 1132
PleI	GAGTC	2 cut(s)	632, 682
PpsI	GAGTC	2 cut(s)	632, 682
PpuMI	RGGWCCY	1 cut(s)	728
PshBI	ATTAAT	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	728
PspN4I	GGNNCC	3 cut(s)	54, 331, 799
PspPI	GGNCC	2 cut(s)	728, 798
PspPPI	RGGWCCY	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	1129
RsaI	GTAC	9 cut(s)	129, 278, 351, 432, 522, 745, 1002, 1019, 1156
RsaNI	GTAC	9 cut(s)	128, 277, 350, 431, 521, 744, 1001, 1018, 1155
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	5 cut(s)	377, 813, 969, 993, 1053
Sau3AI	GATC	2 cut(s)	586, 1129
Sau96I	GGNCC	2 cut(s)	728, 798
ScaI	AGTACT	2 cut(s)	745, 1019
SchI	GAGTC	2 cut(s)	632, 683
ScrFI	CCNGG	4 cut(s)	505, 528, 617, 1134
SduI	GDGCHC	2 cut(s)	809, 1037
SfaNI	GCATC	3 cut(s)	888, 976, 1127
SinI	GGWCC	2 cut(s)	728, 798
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	4 cut(s)	19, 812, 861, 908
SmoI	CTYRAG	4 cut(s)	19, 812, 861, 908
SpeI	ACTAGT	1 cut(s)	719
SphI	GCATGC	2 cut(s)	136, 242
Sse9I	AATT	8 cut(s)	262, 317, 370, 441, 836, 947, 1028, 1170
SseBI	AGGCCT	1 cut(s)	1088
SsiI	CCGC	1 cut(s)	404
SspI	AATATT	2 cut(s)	967, 973
SspMI	CTAG	7 cut(s)	42, 267, 300, 720, 764, 792, 1189
StuI	AGGCCT	1 cut(s)	1088
StyD4I	CCNGG	4 cut(s)	503, 526, 615, 1132
TaaI	ACNGT	3 cut(s)	52, 802, 1147
TaiI	ACGT	1 cut(s)	282
TasI	AATT	8 cut(s)	262, 317, 370, 441, 836, 947, 1028, 1170
TatI	WGTACW	3 cut(s)	520, 743, 1017
TfiI	GAWTC	4 cut(s)	395, 707, 787, 1099
Tru1I	TTAA	5 cut(s)	377, 813, 969, 993, 1053
Tru9I	TTAA	5 cut(s)	377, 813, 969, 993, 1053
TseFI	GTSAC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	2 cut(s)	135, 931
TspGWI	ACGGA	1 cut(s)	1084
Vha464I	CTTAAG	1 cut(s)	812
VneI	GTGCAC	1 cut(s)	1033
VpaK11BI	GGWCC	2 cut(s)	728, 798
VspI	ATTAAT	1 cut(s)	969
XapI	RAATTY	4 cut(s)	262, 370, 836, 1170
XbaI	TCTAGA	1 cut(s)	266
XceI	RCATGY	3 cut(s)	136, 167, 242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XmiI	GTMKAC	2 cut(s)	467, 677
XspI	CTAG	7 cut(s)	42, 267, 300, 720, 764, 792, 1189
ZrmI	AGTACT	2 cut(s)	745, 1019
Zsp2I	ATGCAT	2 cut(s)	240, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.