Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002083.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Forward (+)

79984 .. 80439

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002083.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgcatggtagctctagcgataggagttgtccggtctactcatcactaggcgaggccttgagggctaagaaccctaatgtgaccgtgactacccttaggggcactaatgaaagtctcacctttgatccacctcttgatttgaatacattggagccatcacttccttatcctaatgccgcaagaagagataattcaaagaggggtaagaagaagagtggcttaatgagggagatacaagaaatatttaagaaagtggatgtcaatatcccattgatagacctcattcatcaagtgccggtgtatgctcaatttctcaagagcttgtgcatgaataaaaagaaatttaaagccgatgagacatttgagttgaaggaggaagtaagtgcaattatccaacgaagactaccaccaaagatgcaaaatccggggagctttaccatagggtgtaccatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 ko05010 map03410 map04210 map04212 map04214 map04217 map05010

Pfam Domains

Protein Families

Exo_endo_phos_2 RVT_1 RVT_3 zf-RVT

Protein Analysis

151

Amino Acids

16.95

Weight (kDa)

9.45

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	1 cut(s)	448
AgsI	TTSAA	3 cut(s)	142, 195, 370
AluBI	AGCT	3 cut(s)	12, 321, 432
AluI	AGCT	3 cut(s)	12, 321, 432
Alw26I	GTCTC	2 cut(s)	119, 350
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	406
BccI	CCATC	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	2 cut(s)	119, 350
BfaI	CTAG	2 cut(s)	15, 47
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	406
BpuEI	CTTGAG	2 cut(s)	79, 299
BpuMI	CCSGG	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	295
Bse21I	CCTNAGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	262
BseSI	GKGCMC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	32, 296, 425
BsmAI	GTCTC	2 cut(s)	119, 350
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	178, 206
BstDEI	CTNAG	2 cut(s)	66, 95
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	119, 350
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	424
BstSLI	GKGCMC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	406
Bsu36I	CCTNAGG	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	2 cut(s)	5, 328
CviJI	RGCY	8 cut(s)	12, 56, 65, 154, 219, 321, 350, 432
CviKI_1	RGCY	8 cut(s)	12, 56, 65, 154, 219, 321, 350, 432
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	2 cut(s)	66, 95
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraI	TTTAAA	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	178, 206
EarI	CTCTTC	2 cut(s)	178, 206
Eco147I	AGGCCT	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 331
FaiI	YATR	6 cut(s)	6, 303, 329, 440, 452, 454
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	2 cut(s)	4, 327
FauNDI	CATATG	1 cut(s)	452
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	15, 47
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	3 cut(s)	32, 296, 425
Hin1II	CATG	2 cut(s)	8, 331
HpaII	CCGG	3 cut(s)	32, 296, 425
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	37, 447
Hpy188III	TCNNGA	2 cut(s)	134, 316
Hpy8I	GTNNAC	2 cut(s)	37, 447
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	4 cut(s)	4, 327, 386, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	66, 95
Hsp92II	CATG	2 cut(s)	8, 331
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	151, 429
LpnPI	CCDG	3 cut(s)	45, 309, 438
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	2 cut(s)	15, 47
MaeIII	GTNAC	2 cut(s)	79, 85
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	4 cut(s)	195, 220, 223, 411
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	4 cut(s)	190, 308, 341, 387
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	7 cut(s)	46, 54, 141, 192, 219, 290, 367
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	221, 246, 345
MspI	CCGG	3 cut(s)	32, 296, 425
MspR9I	CCNGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	426
NdeI	CATATG	1 cut(s)	452
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	8, 331
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	79, 85
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	153
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	221, 246, 345
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	6 cut(s)	14, 122, 133, 282, 323, 434
SfaNI	GCATC	1 cut(s)	405
SmlI	CTYRAG	2 cut(s)	58, 314
SmoI	CTYRAG	2 cut(s)	58, 314
Sse9I	AATT	4 cut(s)	190, 308, 341, 387
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	1 cut(s)	177
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	2 cut(s)	15, 47
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	85
TasI	AATT	4 cut(s)	190, 308, 341, 387
TauI	GCSGC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	221, 246, 345
Tru9I	TTAA	3 cut(s)	221, 246, 345
TseFI	GTSAC	2 cut(s)	79, 85
Tsp45I	GTSAC	2 cut(s)	79, 85
TspDTI	ATGAA	3 cut(s)	123, 275, 344
XapI	RAATTY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	2 cut(s)	15, 47
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.