Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

42554497 .. 42555794

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25055

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCATACCAAGGTGGTTCTCATTCATATGGAGGGAATCAAGGCCTTAATTCTTCATCTTTTGGACCCCACGGTCATGGAAATACACAATTTGGTGGACAAAATCATTATGGGCAGCAAGCATCTAATTACAATTCTCAAGGCCAAGGGCCATCTTTTGGTGCTACACATGTTTATGGAGGAGCCCCACATGATACTCAAGGATTTGGTCAAAGTTCTCAATCATTTGGAGGTGCTAATCCTACACAAAATGCTCCTCCCGGCTTTCAAAATAGGCAAGCACCACAACCGGAACCAAAGAAGTCTCATATGGATGATATATTGGCCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.9

Weight (kDa)

9.7

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	157
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	308
AoxI	GGCC	4 cut(s)	42, 141, 148, 323
ApeKI	GCWGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	64, 148
AsuC2I	CCSGG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	331
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	64, 148
BmiI	GGNNCC	3 cut(s)	66, 183, 293
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	130
BpuEI	CTTGAG	2 cut(s)	122, 182
BpuMI	CCSGG	1 cut(s)	260
BsaJI	CCNNGG	3 cut(s)	9, 69, 144
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
BseDI	CCNNGG	3 cut(s)	9, 69, 144
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	194, 245
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	4 cut(s)	44, 143, 150, 325
BsiSI	CCGG	2 cut(s)	260, 289
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	4 cut(s)	44, 143, 150, 325
Bsp1286I	GDGCHC	1 cut(s)	186
BspANI	GGCC	4 cut(s)	44, 143, 150, 325
BspLI	GGNNCC	3 cut(s)	66, 183, 293
BssECI	CCNNGG	3 cut(s)	9, 69, 144
BssT1I	CCWWGG	2 cut(s)	9, 144
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	119, 278
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	76
BsuRI	GGCC	4 cut(s)	44, 143, 150, 325
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	119, 278
Cfr13I	GGNCC	2 cut(s)	64, 148
CviAII	CATG	3 cut(s)	76, 169, 190
CviJI	RGCY	6 cut(s)	44, 143, 150, 184, 263, 325
CviKI_1	RGCY	6 cut(s)	44, 143, 150, 184, 263, 325
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	323
Eco130I	CCWWGG	2 cut(s)	9, 144
Eco147I	AGGCCT	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	9, 144
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	2 cut(s)	9, 144
FaeI	CATG	3 cut(s)	79, 172, 193
FatI	CATG	3 cut(s)	75, 168, 189
FauNDI	CATATG	2 cut(s)	27, 308
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	331
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	4 cut(s)	44, 143, 150, 325
HapII	CCGG	2 cut(s)	260, 289
Hin1II	CATG	3 cut(s)	79, 172, 193
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	2 cut(s)	260, 289
Hpy166II	GTNNAC	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	4
Hsp92II	CATG	3 cut(s)	79, 172, 193
LmnI	GCTCC	2 cut(s)	181, 258
LpnPI	CCDG	2 cut(s)	273, 302
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	331
MboII	GAAGA	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	4 cut(s)	48, 88, 126, 132
MluNI	TGGCCA	1 cut(s)	325
MnlI	CCTC	4 cut(s)	25, 172, 223, 266
Mox20I	TGGCCA	1 cut(s)	325
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	325
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	4 cut(s)	26, 74, 173, 311
Msp20I	TGGCCA	1 cut(s)	325
MspI	CCGG	2 cut(s)	260, 289
MspR9I	CCNGG	1 cut(s)	260
NciI	CCSGG	1 cut(s)	260
NdeI	CATATG	2 cut(s)	27, 308
NlaIII	CATG	3 cut(s)	79, 172, 193
NlaIV	GGNNCC	3 cut(s)	66, 183, 293
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	44
PciI	ACATGT	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	168
PspN4I	GGNNCC	3 cut(s)	66, 183, 293
PspPI	GGNCC	2 cut(s)	64, 148
RseI	CAYNNNNRTG	4 cut(s)	26, 74, 173, 311
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	1 cut(s)	115
Sau96I	GGNCC	2 cut(s)	64, 148
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	2 cut(s)	15, 234
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	4 cut(s)	26, 74, 173, 311
SmlI	CTYRAG	2 cut(s)	137, 197
SmoI	CTYRAG	2 cut(s)	137, 197
Sse9I	AATT	4 cut(s)	48, 88, 126, 132
SseBI	AGGCCT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	331
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	2 cut(s)	9, 144
TaaI	ACNGT	1 cut(s)	73
TasI	AATT	4 cut(s)	48, 88, 126, 132
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseI	GCWGC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	14, 44
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	64
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.