Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001047.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Forward (+)

104443 .. 110077

Gene Structure 5635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001047.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggtgtcagaggttttcggcgtggaggtggatcagggagatcaagtggtggcggaggtggaggaagaagatgagggaaagactgagaaaaaagagattgagaagggtacagccgtcaccatcttcatcctcagcagcggagccactgtccacgggctggtgacctctgccgacacagccaccactacaacgacgttgacaatctctgatccgattagggatagtgcgcaggtcagaaggttatctccggcgaaagagtttgcctcgattcgactgcagcccgccgcaaatcagtcatctccggggagattcagggctcaacccaggctctccagctctcgacacaggccgatggcagaggacagccttgatctggtgcgtcggtttcgagtcatgttattgggtcgtgtcggaattgacagccgaaggggaagaaaatgtacctttcgaaacaagggggttgataaggtagccgaagaggaagaaaatgtaccttccggaggagctattcttgatagtggttatggtttcttgttctttgaaaatgatgcaagtaagtatggtttgattgatagcggcaaggaaagagctttgttgagaaagaacacttctagggatgagaatgtctcagcccctagacaagatggtgaggccatgaaggctagtgacccatctaaggctgatgacacctctaggaaggttcttgatgacattagatctacttatgattttaagccatctacttctaccgaaaaaggggggaggaataaggaggaaggcctacatgctcatgatttggctgcaaattctgcagctaagaatgtagattctgggtcttctgctaacagcactgtcggtggtgctcccattgctggtgctcagtctcggtcaacctatgtccccccgaatcttcgtcaccttcctcaatcatcggacccacctgcttcggaatataatgcgcttgctgggaatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

325

Amino Acids

34.96

Weight (kDa)

5.72

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	949
Acc16I	TGCGCA	1 cut(s)	228
Acc36I	ACCTGC	2 cut(s)	220, 949
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccIII	TCCGGA	1 cut(s)	497
AciI	CCGC	5 cut(s)	53, 138, 282, 285, 576
AclWI	GGATC	2 cut(s)	39, 203
AcsI	RAATTY	1 cut(s)	805
AfaI	GTAC	3 cut(s)	109, 442, 492
AfiI	CCNNNNNNNGG	6 cut(s)	157, 373, 500, 676, 756, 872
AgsI	TTSAA	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	4 cut(s)	336, 506, 590, 815
AluI	AGCT	4 cut(s)	336, 506, 590, 815
Alw21I	GWGCWC	2 cut(s)	865, 880
Alw26I	GTCTC	2 cut(s)	631, 888
AlwI	GGATC	2 cut(s)	39, 203
Aor13HI	TCCGGA	1 cut(s)	497
AoxI	GGCC	3 cut(s)	347, 651, 778
ApeKI	GCWGC	4 cut(s)	135, 277, 800, 812
ApoI	RAATTY	1 cut(s)	805
AspLEI	GCGC	2 cut(s)	229, 961
AspS9I	GGNCC	1 cut(s)	934
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	4 cut(s)	109, 172, 659, 908
AsuII	TTCGAA	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	934
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BanII	GRGCYC	1 cut(s)	319
BarI	GAAGNNNNNNTAC	4 cut(s)	424, 456, 474, 506
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	2 cut(s)	865, 880
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	4 cut(s)	147, 289, 787, 824
BccI	CCATC	5 cut(s)	128, 346, 638, 679, 745
BceAI	ACGGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	631, 888
BfaI	CTAG	4 cut(s)	612, 636, 663, 693
BfmI	CTRYAG	2 cut(s)	275, 810
BfuAI	ACCTGC	2 cut(s)	220, 949
BglI	GCCNNNNNGGC	1 cut(s)	659
BglII	AGATCT	1 cut(s)	716
BisI	GCNGC	6 cut(s)	136, 278, 285, 577, 801, 813
BlsI	GCNGC	6 cut(s)	137, 279, 286, 578, 802, 814
Bme1390I	CCNGG	2 cut(s)	303, 325
Bme18I	GGWCC	1 cut(s)	934
BmgT120I	GGNCC	1 cut(s)	934
BmiI	GGNNCC	2 cut(s)	142, 936
BmrFI	CCNGG	2 cut(s)	303, 325
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	828
BplI	GAGNNNNNCTC	4 cut(s)	248, 280, 611, 643
BpmI	CTGGAG	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	151, 302, 323
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 132, 162
Bsc4I	CCNNNNNNNGG	6 cut(s)	157, 373, 500, 676, 756, 872
Bse3DI	GCAATG	1 cut(s)	867
BseAI	TCCGGA	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	3 cut(s)	151, 302, 323
BseGI	GGATG	2 cut(s)	126, 622
BseLI	CCNNNNNNNGG	6 cut(s)	157, 373, 500, 676, 756, 872
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	4 cut(s)	75, 145, 642, 893
BseRI	GAGGAG	1 cut(s)	516
BseXI	GCAGC	4 cut(s)	147, 289, 787, 824
BseYI	CCCAGC	1 cut(s)	965
BshFI	GGCC	3 cut(s)	349, 653, 780
BsiHKAI	GWGCWC	2 cut(s)	865, 880
BsiSI	CCGG	3 cut(s)	248, 302, 498
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	6 cut(s)	157, 373, 500, 676, 756, 872
BsmAI	GTCTC	2 cut(s)	631, 888
BsmFI	GGGAC	1 cut(s)	884
BsnI	GGCC	3 cut(s)	349, 653, 780
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	3 cut(s)	319, 865, 880
Bsp13I	TCCGGA	1 cut(s)	497
Bsp143I	GATC	5 cut(s)	31, 40, 208, 370, 716
BspACI	CCGC	5 cut(s)	53, 138, 282, 285, 576
BspANI	GGCC	3 cut(s)	349, 653, 780
BspCNI	CTCAG	4 cut(s)	76, 144, 641, 892
BspEI	TCCGGA	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	2 cut(s)	142, 936
BspMAI	CTGCAG	2 cut(s)	279, 814
BspMI	ACCTGC	2 cut(s)	220, 949
BspPI	GGATC	2 cut(s)	39, 203
BspT104I	TTCGAA	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	867
BssECI	CCNNGG	3 cut(s)	151, 302, 323
BssMI	GATC	5 cut(s)	31, 40, 208, 370, 716
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	148, 853
Bst6I	CTCTTC	1 cut(s)	471
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstBI	TTCGAA	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	282, 963
BstDEI	CTNAG	6 cut(s)	84, 131, 628, 675, 816, 879
BstDSI	CCRYGG	1 cut(s)	151
BstEII	GGTNACC	1 cut(s)	160
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	126, 622
BstHHI	GCGC	2 cut(s)	229, 961
BstKTI	GATC	5 cut(s)	34, 43, 211, 373, 719
BstMAI	GTCTC	2 cut(s)	631, 888
BstMBI	GATC	5 cut(s)	31, 40, 208, 370, 716
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 659, 809, 869
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	788
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	301, 323
BstSFI	CTRYAG	2 cut(s)	275, 810
BstV1I	GCAGC	4 cut(s)	147, 289, 787, 824
BstV2I	GAAGAC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	349, 653, 780
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	126, 622
BtsIMutI	CAGTG	2 cut(s)	144, 849
BveI	ACCTGC	2 cut(s)	220, 949
Cac8I	GCNNGC	2 cut(s)	282, 963
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	2 cut(s)	229, 961
Cfr13I	GGNCC	1 cut(s)	934
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	3 cut(s)	108, 441, 491
CviAII	CATG	4 cut(s)	394, 655, 785, 791
CviQI	GTAC	3 cut(s)	108, 441, 491
DdeI	CTNAG	6 cut(s)	84, 131, 628, 675, 816, 879
DpnI	GATC	5 cut(s)	33, 42, 210, 372, 718
DpnII	GATC	5 cut(s)	31, 40, 208, 370, 716
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	934
Eco91I	GGTNACC	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoO65I	GGTNACC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	319
FaeI	CATG	4 cut(s)	397, 658, 788, 794
FaiI	YATR	9 cut(s)	395, 525, 561, 656, 726, 786, 792, 897, 954
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	4 cut(s)	393, 654, 784, 790
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	6 cut(s)	136, 278, 285, 577, 801, 813
FokI	GGATG	2 cut(s)	113, 629
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	6 cut(s)	136, 278, 285, 577, 801, 813
FspBI	CTAG	4 cut(s)	612, 636, 663, 693
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	2 cut(s)	228, 960
GluI	GCNGC	6 cut(s)	136, 278, 285, 577, 801, 813
GsaI	CCCAGC	1 cut(s)	969
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	3 cut(s)	349, 653, 780
HapII	CCGG	3 cut(s)	248, 302, 498
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	2 cut(s)	229, 961
Hin1II	CATG	4 cut(s)	397, 658, 788, 794
Hin6I	GCGC	2 cut(s)	227, 959
HinP1I	GCGC	2 cut(s)	227, 959
HincII	GTYRAC	2 cut(s)	198, 891
HindII	GTYRAC	2 cut(s)	198, 891
HinfI	GANTC	5 cut(s)	268, 309, 390, 827, 907
HpaII	CCGG	3 cut(s)	248, 302, 498
HphI	GGTGA	4 cut(s)	109, 172, 659, 908
Hpy166II	GTNNAC	3 cut(s)	151, 198, 891
Hpy188I	TCNGA	7 cut(s)	10, 208, 213, 236, 413, 934, 949
Hpy188III	TCNNGA	5 cut(s)	339, 498, 512, 704, 791
Hpy8I	GTNNAC	3 cut(s)	151, 198, 891
Hpy99I	CGWCG	2 cut(s)	196, 384
HpyAV	CCTTC	8 cut(s)	97, 231, 420, 504, 652, 691, 770, 929
HpyCH4III	ACNGT	2 cut(s)	148, 853
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	277, 551, 803, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 659, 809, 869
HpyF3I	CTNAG	6 cut(s)	84, 131, 628, 675, 816, 879
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	4 cut(s)	397, 658, 788, 794
HspAI	GCGC	2 cut(s)	227, 959
Kpn2I	TCCGGA	1 cut(s)	497
Kzo9I	GATC	5 cut(s)	31, 40, 208, 370, 716
LmnI	GCTCC	3 cut(s)	140, 503, 868
Lsp1109I	GCAGC	4 cut(s)	147, 289, 787, 824
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	4 cut(s)	612, 636, 663, 693
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	4 cut(s)	115, 160, 665, 914
MalI	GATC	5 cut(s)	33, 42, 210, 372, 718
MboI	GATC	5 cut(s)	31, 40, 208, 370, 716
MboII	GAAGA	8 cut(s)	77, 80, 115, 444, 488, 494, 828, 902
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	3 cut(s)	319, 865, 880
MluCI	AATT	2 cut(s)	414, 805
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	391
MroI	TCCGGA	1 cut(s)	497
MseI	TTAA	1 cut(s)	732
MslI	CAYNNNNRTG	1 cut(s)	789
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	3 cut(s)	248, 302, 498
MspR9I	CCNGG	2 cut(s)	303, 325
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	176, 659, 809, 869
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	5 cut(s)	31, 40, 208, 370, 716
NlaIII	CATG	4 cut(s)	397, 658, 788, 794
NlaIV	GGNNCC	2 cut(s)	142, 936
NmuCI	GTSAC	4 cut(s)	115, 160, 665, 914
NsbI	TGCGCA	1 cut(s)	228
NspI	RCATGY	1 cut(s)	788
NspV	TTCGAA	1 cut(s)	448
PagI	TCATGA	1 cut(s)	790
PaqCI	CACCTGC	1 cut(s)	949
PceI	AGGCCT	1 cut(s)	780
PfeI	GAWTC	4 cut(s)	268, 309, 827, 907
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	6 cut(s)	137, 279, 286, 578, 802, 814
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	323
PspEI	GGTNACC	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	965
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	142, 936
PspPI	GGNCC	1 cut(s)	934
PstI	CTGCAG	2 cut(s)	279, 814
PsuI	RGATCY	1 cut(s)	716
RsaI	GTAC	3 cut(s)	109, 442, 492
RsaNI	GTAC	3 cut(s)	108, 441, 491
RseI	CAYNNNNRTG	1 cut(s)	789
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	6 cut(s)	136, 278, 285, 577, 801, 813
Sau3AI	GATC	5 cut(s)	31, 40, 208, 370, 716
Sau96I	GGNCC	1 cut(s)	934
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	2 cut(s)	303, 325
SduI	GDGCHC	3 cut(s)	319, 865, 880
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	2 cut(s)	275, 810
SfuI	TTCGAA	1 cut(s)	448
SinI	GGWCC	1 cut(s)	934
SmiMI	CAYNNNNRTG	1 cut(s)	789
Sse9I	AATT	2 cut(s)	414, 805
SseBI	AGGCCT	1 cut(s)	780
SsiI	CCGC	5 cut(s)	53, 138, 282, 285, 576
SspMI	CTAG	4 cut(s)	612, 636, 663, 693
StuI	AGGCCT	1 cut(s)	780
StyD4I	CCNGG	2 cut(s)	301, 323
TaaI	ACNGT	2 cut(s)	148, 853
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	5 cut(s)	266, 271, 340, 388, 448
TaqII	GACCGA	1 cut(s)	876
TasI	AATT	2 cut(s)	414, 805
TauI	GCSGC	2 cut(s)	287, 579
TfiI	GAWTC	4 cut(s)	268, 309, 827, 907
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	2 cut(s)	151, 856
TseFI	GTSAC	4 cut(s)	115, 160, 665, 914
TseI	GCWGC	4 cut(s)	135, 277, 800, 812
Tsp45I	GTSAC	4 cut(s)	115, 160, 665, 914
TspDTI	ATGAA	2 cut(s)	115, 671
TspRI	CASTG	2 cut(s)	151, 856
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	934
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	1 cut(s)	805
XceI	RCATGY	1 cut(s)	788
XspI	CTAG	4 cut(s)	612, 636, 663, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.