transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 145 - 237 | 1.5e-20 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1170 |
| AbsI | CCTCGAGG | 1 cut(s) | 126 |
| AccIII | TCCGGA | 3 cut(s) | 1087, 1552, 2125 |
| AciI | CCGC | 5 cut(s) | 45, 368, 716, 780, 1625 |
| AclWI | GGATC | 4 cut(s) | 85, 98, 648, 1145 |
| AcoI | YGGCCR | 3 cut(s) | 1264, 1716, 1945 |
| AcsI | RAATTY | 1 cut(s) | 1285 |
| AdeI | CACNNNGTG | 1 cut(s) | 1439 |
| AfeI | AGCGCT | 1 cut(s) | 632 |
| AhlI | ACTAGT | 1 cut(s) | 1651 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2123, 2155 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1499, 1531 |
| AluBI | AGCT | 7 cut(s) | 430, 580, 769, 1254, 1389, 1479, 1550 |
| AluI | AGCT | 7 cut(s) | 430, 580, 769, 1254, 1389, 1479, 1550 |
| Alw21I | GWGCWC | 1 cut(s) | 121 |
| Alw26I | GTCTC | 7 cut(s) | 70, 180, 413, 1203, 1622, 1729, 2000 |
| AlwI | GGATC | 4 cut(s) | 85, 98, 648, 1145 |
| Ama87I | CYCGRG | 2 cut(s) | 126, 1424 |
| Aor13HI | TCCGGA | 3 cut(s) | 1087, 1552, 2125 |
| Aor51HI | AGCGCT | 1 cut(s) | 632 |
| ApoI | RAATTY | 1 cut(s) | 1285 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2135 |
| AspLEI | GCGC | 1 cut(s) | 633 |
| AspS9I | GGNCC | 5 cut(s) | 718, 917, 1490, 1708, 1917 |
| AsuC2I | CCSGG | 4 cut(s) | 916, 1176, 1425, 1426 |
| AsuHPI | GGTGA | 3 cut(s) | 242, 653, 2063 |
| AvaI | CYCGRG | 2 cut(s) | 126, 1424 |
| AvaII | GGWCC | 1 cut(s) | 718 |
| BalI | TGGCCA | 3 cut(s) | 1266, 1718, 1947 |
| BamHI | GGATCC | 1 cut(s) | 90 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1920, 1952, 2010, 2042, 2102, 2134 |
| BbsI | GAAGAC | 1 cut(s) | 1587 |
| Bbv12I | GWGCWC | 1 cut(s) | 121 |
| BccI | CCATC | 3 cut(s) | 706, 1003, 1582 |
| BciVI | GTATCC | 1 cut(s) | 58 |
| BclI | TGATCA | 3 cut(s) | 136, 247, 829 |
| BcnI | CCSGG | 4 cut(s) | 916, 1176, 1425, 1426 |
| BcoDI | GTCTC | 7 cut(s) | 70, 180, 413, 1203, 1622, 1729, 2000 |
| BcuI | ACTAGT | 1 cut(s) | 1651 |
| BfmI | CTRYAG | 2 cut(s) | 700, 1447 |
| BfoI | RGCGCY | 1 cut(s) | 634 |
| BfuI | GTATCC | 1 cut(s) | 58 |
| BisI | GCNGC | 1 cut(s) | 780 |
| BlsI | GCNGC | 1 cut(s) | 781 |
| BmcAI | AGTACT | 1 cut(s) | 542 |
| Bme1390I | CCNGG | 4 cut(s) | 916, 1176, 1425, 1426 |
| Bme18I | GGWCC | 1 cut(s) | 718 |
| BmeT110I | CYCGRG | 2 cut(s) | 126, 1424 |
| BmgT120I | GGNCC | 5 cut(s) | 718, 917, 1490, 1708, 1917 |
| BmiI | GGNNCC | 6 cut(s) | 92, 1139, 1492, 1747, 1767, 1918 |
| BmrFI | CCNGG | 4 cut(s) | 916, 1176, 1425, 1426 |
| BmsI | GCATC | 6 cut(s) | 20, 292, 507, 766, 826, 1984 |
| BpiI | GAAGAC | 1 cut(s) | 1587 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 136, 168, 1584, 1616 |
| BpuMI | CCSGG | 4 cut(s) | 916, 1176, 1425, 1426 |
| BsaAI | YACGTR | 1 cut(s) | 503 |
| BsaI | GGTCTC | 6 cut(s) | 70, 413, 1203, 1622, 1729, 2000 |
| BsaWI | WCCGGW | 7 cut(s) | 981, 1087, 1552, 1762, 2009, 2033, 2125 |
| Bse3DI | GCAATG | 3 cut(s) | 363, 1309, 1804 |
| BseAI | TCCGGA | 3 cut(s) | 1087, 1552, 2125 |
| BseGI | GGATG | 6 cut(s) | 832, 911, 1076, 1189, 1561, 2008 |
| BseMI | GCAATG | 3 cut(s) | 363, 1309, 1804 |
| BseRI | GAGGAG | 2 cut(s) | 192, 981 |
| BsiHKAI | GWGCWC | 1 cut(s) | 121 |
| BsiHKCI | CYCGRG | 2 cut(s) | 126, 1424 |
| BslFI | GGGAC | 1 cut(s) | 800 |
| BsmAI | GTCTC | 7 cut(s) | 70, 180, 413, 1203, 1622, 1729, 2000 |
| BsmBI | CGTCTC | 1 cut(s) | 180 |
| BsmFI | GGGAC | 1 cut(s) | 800 |
| BsmI | GAATGC | 5 cut(s) | 315, 1536, 1799, 1906, 2071 |
| Bso31I | GGTCTC | 6 cut(s) | 70, 413, 1203, 1622, 1729, 2000 |
| BsoBI | CYCGRG | 2 cut(s) | 126, 1424 |
| Bsp1286I | GDGCHC | 1 cut(s) | 121 |
| Bsp13I | TCCGGA | 3 cut(s) | 1087, 1552, 2125 |
| Bsp143I | GATC | 9 cut(s) | 30, 90, 136, 247, 294, 494, 640, 829, 1150 |
| Bsp19I | CCATGG | 1 cut(s) | 664 |
| BspACI | CCGC | 5 cut(s) | 45, 368, 716, 780, 1625 |
| BspEI | TCCGGA | 3 cut(s) | 1087, 1552, 2125 |
| BspHI | TCATGA | 2 cut(s) | 832, 1978 |
| BspLI | GGNNCC | 6 cut(s) | 92, 1139, 1492, 1747, 1767, 1918 |
| BspPI | GGATC | 4 cut(s) | 85, 98, 648, 1145 |
| BspTNI | GGTCTC | 6 cut(s) | 70, 413, 1203, 1622, 1729, 2000 |
| BsrDI | GCAATG | 3 cut(s) | 363, 1309, 1804 |
| BssMI | GATC | 9 cut(s) | 30, 90, 136, 247, 294, 494, 640, 829, 1150 |
| BssT1I | CCWWGG | 8 cut(s) | 664, 880, 1133, 1213, 1267, 1312, 1498, 1531 |
| Bst4CI | ACNGT | 1 cut(s) | 394 |
| Bst6I | CTCTTC | 1 cut(s) | 1651 |
| BstBAI | YACGTR | 1 cut(s) | 503 |
| BstC8I | GCNNGC | 4 cut(s) | 763, 767, 1356, 2181 |
| BstDEI | CTNAG | 4 cut(s) | 38, 155, 431, 532 |
| BstDSI | CCRYGG | 1 cut(s) | 664 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 204, 879 |
| BstF5I | GGATG | 6 cut(s) | 832, 911, 1076, 1189, 1561, 2008 |
| BstH2I | RGCGCY | 1 cut(s) | 634 |
| BstHHI | GCGC | 1 cut(s) | 633 |
| BstKTI | GATC | 9 cut(s) | 33, 93, 139, 250, 297, 497, 643, 832, 1153 |
| BstMAI | GTCTC | 7 cut(s) | 70, 180, 413, 1203, 1622, 1729, 2000 |
| BstMBI | GATC | 9 cut(s) | 30, 90, 136, 247, 294, 494, 640, 829, 1150 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 925, 1386, 1476 |
| BstNSI | RCATGY | 1 cut(s) | 1852 |
| BstSCI | CCNGG | 4 cut(s) | 914, 1174, 1423, 1424 |
| BstSFI | CTRYAG | 2 cut(s) | 700, 1447 |
| BstSNI | TACGTA | 1 cut(s) | 503 |
| BstV2I | GAAGAC | 1 cut(s) | 1587 |
| BstX2I | RGATCY | 2 cut(s) | 90, 640 |
| BstYI | RGATCY | 2 cut(s) | 90, 640 |
| BsuI | GTATCC | 1 cut(s) | 58 |
| BtgI | CCRYGG | 1 cut(s) | 664 |
| BtsCI | GGATG | 6 cut(s) | 832, 911, 1076, 1189, 1561, 2008 |
| Cac8I | GCNNGC | 4 cut(s) | 763, 767, 1356, 2181 |
| CciI | TCATGA | 2 cut(s) | 832, 1978 |
| CfoI | GCGC | 1 cut(s) | 633 |
| Cfr13I | GGNCC | 5 cut(s) | 718, 917, 1490, 1708, 1917 |
| Cfr9I | CCCGGG | 1 cut(s) | 1424 |
| CseI | GACGC | 1 cut(s) | 197 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 226, 261 |
| DdeI | CTNAG | 4 cut(s) | 38, 155, 431, 532 |
| DpnI | GATC | 9 cut(s) | 32, 92, 138, 249, 296, 496, 642, 831, 1152 |
| DpnII | GATC | 9 cut(s) | 30, 90, 136, 247, 294, 494, 640, 829, 1150 |
| DraIII | CACNNNGTG | 1 cut(s) | 1439 |
| EaeI | YGGCCR | 3 cut(s) | 1264, 1716, 1945 |
| Eam1104I | CTCTTC | 1 cut(s) | 1651 |
| EarI | CTCTTC | 1 cut(s) | 1651 |
| EciI | GGCGGA | 1 cut(s) | 731 |
| Eco105I | TACGTA | 1 cut(s) | 503 |
| Eco130I | CCWWGG | 8 cut(s) | 664, 880, 1133, 1213, 1267, 1312, 1498, 1531 |
| Eco31I | GGTCTC | 6 cut(s) | 70, 413, 1203, 1622, 1729, 2000 |
| Eco47I | GGWCC | 1 cut(s) | 718 |
| Eco47III | AGCGCT | 1 cut(s) | 632 |
| Eco88I | CYCGRG | 2 cut(s) | 126, 1424 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 204, 879 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1490 |
| EcoT14I | CCWWGG | 8 cut(s) | 664, 880, 1133, 1213, 1267, 1312, 1498, 1531 |
| EcoT22I | ATGCAT | 2 cut(s) | 858, 930 |
| ErhI | CCWWGG | 8 cut(s) | 664, 880, 1133, 1213, 1267, 1312, 1498, 1531 |
| Esp3I | CGTCTC | 1 cut(s) | 180 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1238, 1270, 1733, 1765 |
| FaqI | GGGAC | 1 cut(s) | 800 |
| FauNDI | CATATG | 3 cut(s) | 793, 1360, 1912 |
| FbaI | TGATCA | 3 cut(s) | 136, 247, 829 |
| Fnu4HI | GCNGC | 1 cut(s) | 780 |
| FokI | GGATG | 6 cut(s) | 839, 898, 1063, 1176, 1568, 2015 |
| Fsp4HI | GCNGC | 1 cut(s) | 780 |
| GlaI | GCGC | 1 cut(s) | 632 |
| GluI | GCNGC | 1 cut(s) | 780 |
| HaeII | RGCGCY | 1 cut(s) | 634 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 1 cut(s) | 633 |
| Hin6I | GCGC | 1 cut(s) | 631 |
| HinP1I | GCGC | 1 cut(s) | 631 |
| HincII | GTYRAC | 3 cut(s) | 178, 736, 1343 |
| HindII | GTYRAC | 3 cut(s) | 178, 736, 1343 |
| HindIII | AAGCTT | 3 cut(s) | 428, 767, 1252 |
| HinfI | GANTC | 5 cut(s) | 1042, 1186, 1277, 1982, 2131 |
| HphI | GGTGA | 3 cut(s) | 242, 653, 2063 |
| Hpy188I | TCNGA | 1 cut(s) | 95 |
| HpyCH4III | ACNGT | 1 cut(s) | 394 |
| HpyCH4IV | ACGT | 2 cut(s) | 502, 1816 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 925, 1386, 1476 |
| HpyF3I | CTNAG | 4 cut(s) | 38, 155, 431, 532 |
| HpySE526I | ACGT | 2 cut(s) | 502, 1816 |
| HspAI | GCGC | 1 cut(s) | 631 |
| Kpn2I | TCCGGA | 3 cut(s) | 1087, 1552, 2125 |
| Ksp22I | TGATCA | 3 cut(s) | 136, 247, 829 |
| Kzo9I | GATC | 9 cut(s) | 30, 90, 136, 247, 294, 494, 640, 829, 1150 |
| LmnI | GCTCC | 5 cut(s) | 124, 628, 1555, 1745, 1765 |
| LweI | GCATC | 6 cut(s) | 20, 292, 507, 766, 826, 1984 |
| MaeII | ACGT | 2 cut(s) | 502, 1816 |
| MaeIII | GTNAC | 3 cut(s) | 106, 1067, 2056 |
| MalI | GATC | 9 cut(s) | 32, 92, 138, 249, 296, 496, 642, 831, 1152 |
| MboI | GATC | 9 cut(s) | 30, 90, 136, 247, 294, 494, 640, 829, 1150 |
| MflI | RGATCY | 2 cut(s) | 90, 640 |
| MhlI | GDGCHC | 1 cut(s) | 121 |
| MlsI | TGGCCA | 3 cut(s) | 1266, 1718, 1947 |
| MluNI | TGGCCA | 3 cut(s) | 1266, 1718, 1947 |
| MlyI | GAGTC | 2 cut(s) | 1051, 1271 |
| MmeI | TCCRAC | 1 cut(s) | 1160 |
| Mox20I | TGGCCA | 3 cut(s) | 1266, 1718, 1947 |
| Mph1103I | ATGCAT | 2 cut(s) | 858, 930 |
| MroI | TCCGGA | 3 cut(s) | 1087, 1552, 2125 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2135 |
| MscI | TGGCCA | 3 cut(s) | 1266, 1718, 1947 |
| MseI | TTAA | 3 cut(s) | 330, 636, 810 |
| MslI | CAYNNNNRTG | 3 cut(s) | 825, 1724, 1911 |
| Msp20I | TGGCCA | 3 cut(s) | 1266, 1718, 1947 |
| MspR9I | CCNGG | 4 cut(s) | 916, 1176, 1425, 1426 |
| Mva1269I | GAATGC | 5 cut(s) | 315, 1536, 1799, 1906, 2071 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 925, 1386, 1476 |
| NciI | CCSGG | 4 cut(s) | 916, 1176, 1425, 1426 |
| NcoI | CCATGG | 1 cut(s) | 664 |
| NdeI | CATATG | 3 cut(s) | 793, 1360, 1912 |
| NdeII | GATC | 9 cut(s) | 30, 90, 136, 247, 294, 494, 640, 829, 1150 |
| NlaIV | GGNNCC | 6 cut(s) | 92, 1139, 1492, 1747, 1767, 1918 |
| NmuCI | GTSAC | 3 cut(s) | 106, 1067, 2056 |
| NsiI | ATGCAT | 2 cut(s) | 858, 930 |
| NspI | RCATGY | 1 cut(s) | 1852 |
| PaeR7I | CTCGAG | 1 cut(s) | 126 |
| PagI | TCATGA | 2 cut(s) | 832, 1978 |
| PctI | GAATGC | 5 cut(s) | 315, 1536, 1799, 1906, 2071 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2135 |
| PfeI | GAWTC | 3 cut(s) | 1186, 1982, 2131 |
| PkrI | GCNGC | 1 cut(s) | 781 |
| PleI | GAGTC | 2 cut(s) | 1050, 1271 |
| PpsI | GAGTC | 2 cut(s) | 1050, 1271 |
| Ppu21I | YACGTR | 1 cut(s) | 503 |
| PsiI | TTATAA | 1 cut(s) | 1170 |
| PspN4I | GGNNCC | 6 cut(s) | 92, 1139, 1492, 1747, 1767, 1918 |
| PspPI | GGNCC | 5 cut(s) | 718, 917, 1490, 1708, 1917 |
| PspXI | VCTCGAGB | 1 cut(s) | 126 |
| PsuI | RGATCY | 2 cut(s) | 90, 640 |
| RseI | CAYNNNNRTG | 3 cut(s) | 825, 1724, 1911 |
| SaqAI | TTAA | 3 cut(s) | 330, 636, 810 |
| SatI | GCNGC | 1 cut(s) | 780 |
| Sau3AI | GATC | 9 cut(s) | 30, 90, 136, 247, 294, 494, 640, 829, 1150 |
| Sau96I | GGNCC | 5 cut(s) | 718, 917, 1490, 1708, 1917 |
| ScaI | AGTACT | 1 cut(s) | 542 |
| SchI | GAGTC | 2 cut(s) | 1051, 1271 |
| ScrFI | CCNGG | 4 cut(s) | 916, 1176, 1425, 1426 |
| SduI | GDGCHC | 1 cut(s) | 121 |
| SfaNI | GCATC | 6 cut(s) | 20, 292, 507, 766, 826, 1984 |
| SfcI | CTRYAG | 2 cut(s) | 700, 1447 |
| Sfr274I | CTCGAG | 1 cut(s) | 126 |
| SinI | GGWCC | 1 cut(s) | 718 |
| SlaI | CTCGAG | 1 cut(s) | 126 |
| SmaI | CCCGGG | 1 cut(s) | 1426 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 825, 1724, 1911 |
| SnaBI | TACGTA | 1 cut(s) | 503 |
| SpeI | ACTAGT | 1 cut(s) | 1651 |
| SsiI | CCGC | 5 cut(s) | 45, 368, 716, 780, 1625 |
| StyD4I | CCNGG | 4 cut(s) | 914, 1174, 1423, 1424 |
| StyI | CCWWGG | 8 cut(s) | 664, 880, 1133, 1213, 1267, 1312, 1498, 1531 |
| TaaI | ACNGT | 1 cut(s) | 394 |
| TaiI | ACGT | 2 cut(s) | 505, 1819 |
| TaqI | TCGA | 1 cut(s) | 127 |
| TaqII | GACCGA | 1 cut(s) | 125 |
| TatI | WGTACW | 5 cut(s) | 225, 265, 386, 540, 869 |
| TauI | GCSGC | 1 cut(s) | 782 |
| TfiI | GAWTC | 3 cut(s) | 1186, 1982, 2131 |
| Tru1I | TTAA | 3 cut(s) | 330, 636, 810 |
| Tru9I | TTAA | 3 cut(s) | 330, 636, 810 |
| TseFI | GTSAC | 3 cut(s) | 106, 1067, 2056 |
| Tsp45I | GTSAC | 3 cut(s) | 106, 1067, 2056 |
| TspDTI | ATGAA | 8 cut(s) | 9, 17, 809, 810, 1212, 1394, 1572, 1899 |
| TspGWI | ACGGA | 1 cut(s) | 1778 |
| TspMI | CCCGGG | 1 cut(s) | 1424 |
| VpaK11BI | GGWCC | 1 cut(s) | 718 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 204, 879 |
| XapI | RAATTY | 1 cut(s) | 1285 |
| XceI | RCATGY | 1 cut(s) | 1852 |
| XhoI | CTCGAG | 1 cut(s) | 126 |
| XmaI | CCCGGG | 1 cut(s) | 1424 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2135 |
| ZrmI | AGTACT | 1 cut(s) | 542 |
| Zsp2I | ATGCAT | 2 cut(s) | 858, 930 |