Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8477889.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2054

Gene Structure 2054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8477889.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 628 bp

gtttcgagtcatgttattgggtcgtgtcggaattgacagccgaaggggaagaaaatgtacctttcgaaacaagggggttgataaggtagccgaagaggaagaaaatgtaccttccggaggagctattcttgatagtggttatggtttcttgttctttgaaaatgatgcaagtaagtatggtttgattgatagcggcaagaaaagagctttgttgagaaagaacacttctagggatgagaatgtctcagcccctagacaagatggtgaggccatgaaggctagtgacccatctaaggctgatgacacctctaggaaggttcttgatgacattagatctacttatgattttaagccatctacttctaccgaaaaaggggggaggaataaggaggaaggcctacatgctcatggtatctctagtgatagaaaagtggtccgatggcatttgctcccacatgactttgctggttcttcttcgacctctattgaaatagcacggctgagcattccaagcaagaaacaggtcgtcttcccgaaccattgtgggcatgagcaaccagatatttgtgcggaggcgtccaaaatcatagagctccagcgaattcgagctctgactgctctgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.03

Weight (kDa)

9.24

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	2 cut(s)	193, 570
AcsI	RAATTY	1 cut(s)	601
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	2 cut(s)	59, 109
AfiI	CCNNNNNNNGG	3 cut(s)	117, 293, 373
AgsI	TTSAA	2 cut(s)	159, 489
AluBI	AGCT	4 cut(s)	123, 207, 593, 609
AluI	AGCT	4 cut(s)	123, 207, 593, 609
Alw21I	GWGCWC	2 cut(s)	595, 611
Alw26I	GTCTC	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	2 cut(s)	268, 395
ApoI	RAATTY	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	276
AsuII	TTCGAA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	434
BanII	GRGCYC	2 cut(s)	595, 611
BarI	GAAGNNNNNNTAC	4 cut(s)	41, 73, 91, 123
BbsI	GAAGAC	1 cut(s)	521
Bbv12I	GWGCWC	2 cut(s)	595, 611
BccI	CCATC	4 cut(s)	255, 296, 362, 433
BceAI	ACGGC	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	5 cut(s)	229, 253, 280, 310, 418
BglI	GCCNNNNNGGC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	1 cut(s)	194
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmsI	GCATC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	521
BplI	GAGNNNNNCTC	2 cut(s)	228, 260
BpmI	CTGGAG	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	501
Bpu14I	TTCGAA	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	576
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 293, 373
BseAI	TCCGGA	1 cut(s)	114
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	3 cut(s)	117, 293, 373
BseMII	CTCAG	2 cut(s)	259, 492
BseRI	GAGGAG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	270, 397
BsiHKAI	GWGCWC	2 cut(s)	595, 611
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	117, 293, 373
BsmAI	GTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	2 cut(s)	270, 397
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	595, 611
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	333
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	2 cut(s)	193, 570
BspANI	GGCC	2 cut(s)	270, 397
BspCNI	CTCAG	2 cut(s)	258, 493
BspEI	TCCGGA	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	65
BssMI	GATC	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	576
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	576
BstBI	TTCGAA	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	245, 292, 501
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	239
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 511, 615
BstNSI	RCATGY	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	270, 397
BtsCI	GGATG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	2 cut(s)	58, 108
CviAII	CATG	6 cut(s)	11, 272, 402, 408, 456, 549
CviQI	GTAC	2 cut(s)	58, 108
DdeI	CTNAG	3 cut(s)	245, 292, 501
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Ecl136II	GAGCTC	2 cut(s)	593, 609
Eco147I	AGGCCT	1 cut(s)	397
Eco24I	GRGCYC	2 cut(s)	595, 611
Eco47I	GGWCC	1 cut(s)	434
Eco53kI	GAGCTC	2 cut(s)	593, 609
EcoICRI	GAGCTC	2 cut(s)	593, 609
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	601
EcoT38I	GRGCYC	2 cut(s)	595, 611
FaeI	CATG	6 cut(s)	14, 275, 405, 411, 459, 552
FatI	CATG	6 cut(s)	10, 271, 401, 407, 455, 548
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	2 cut(s)	595, 611
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	5 cut(s)	229, 253, 280, 310, 418
GluI	GCNGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	270, 397
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	565
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	6 cut(s)	14, 275, 405, 411, 459, 552
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	1 cut(s)	276
Hpy188I	TCNGA	4 cut(s)	30, 438, 613, 622
Hpy188III	TCNNGA	4 cut(s)	115, 129, 321, 533
HpyAV	CCTTC	5 cut(s)	37, 121, 269, 308, 387
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 511, 615
HpyF3I	CTNAG	3 cut(s)	245, 292, 501
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	6 cut(s)	14, 275, 405, 411, 459, 552
Kpn2I	TCCGGA	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	3 cut(s)	120, 454, 598
LpnPI	CCDG	5 cut(s)	128, 451, 507, 571, 609
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	5 cut(s)	229, 253, 280, 310, 418
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	6 cut(s)	61, 105, 111, 463, 466, 521
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	2 cut(s)	595, 611
MluCI	AATT	2 cut(s)	31, 601
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	8 cut(s)	89, 111, 260, 317, 373, 383, 491, 566
MroI	TCCGGA	1 cut(s)	114
MseI	TTAA	1 cut(s)	349
MslI	CAYNNNNRTG	1 cut(s)	406
MspI	CCGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	505
MwoI	GCNNNNNNNGC	3 cut(s)	276, 511, 615
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	6 cut(s)	14, 275, 405, 411, 459, 552
NmuCI	GTSAC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	397
PctI	GAATGC	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp124BI	GAGCTC	2 cut(s)	595, 611
PspPI	GGNCC	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	333
RsaI	GTAC	2 cut(s)	59, 109
RsaNI	GTAC	2 cut(s)	58, 108
RseI	CAYNNNNRTG	1 cut(s)	406
SacI	GAGCTC	2 cut(s)	595, 611
SaqAI	TTAA	1 cut(s)	349
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	595, 611
SfaNI	GCATC	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	406
Sse9I	AATT	2 cut(s)	31, 601
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	2 cut(s)	193, 570
SspMI	CTAG	5 cut(s)	229, 253, 280, 310, 418
SstI	GAGCTC	2 cut(s)	595, 611
StuI	AGGCCT	1 cut(s)	397
TaqI	TCGA	4 cut(s)	5, 65, 477, 605
TasI	AATT	2 cut(s)	31, 601
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	434
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	405
XspI	CTAG	5 cut(s)	229, 253, 280, 310, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.