Rmu_sc0001575.1_g000031

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001575.1
OG0001407
Physical Location & Seq
Reverse (-)
206717 .. 207939
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001575.1_g000031.1.cds

Sequence Viewer

Length: 1116 bp
atgggagagtttctcaaggttcaaacttctactaatgcggagaccaagcaaaacatctcttcactagttcaagggtatcaaactctacaacagggcatggctagactaaaggtacaagtgggccaaatggccaccaatatgagtgagagaccaaaaggagccttaccttcacaaccggagccaaacccaagaggaaagctccatgaatgcaatgccatcaccaccctacgttcgggaaaggtatatgataatcatgtttacatgcctacatcttctagtctctatacaaatcctttatttgatgatgatgtcgtgggtgatgtgacttttaatgcaaaaggaagaaataagggggtggataaggtagccaaaggggaagaaaatgtacccttcggaggagctattcttggtaaaggttatggattcttgtccttcaagaatgatgcaagaaaatatggtttgattgatagtggcaaggaaagggccatgttgagaaagaacacttctagggatgtggatgcttcagcccctaagttagatggtgaggccatgaaggctagggacccatctacggccgataacacctctaggaaggttcttgatgacattagacccaccactcatgagtttgagctatctacttctagagaaaaagaggggaggaataagaaggaagatttacatatgcatggtagctctagggataggacttgtccggtctgctcatcactaggcgaggccttgaggggtaagaaccctagtgggactgtgactacccttaggggcactatcggaagtctcacatttgatccaccccttgatttgaatgcaccagagctaccacttccttatccttatgccgcaagaagagataactcaaagaggggtaagaagaagagtggcttgatgagggagatacaagaaatatttaagaaagtggatgtcaatatcccattgatggaccttattcatcaagtgctggtgtatgctcaatttctcaagagcttgtgcatgaataaaaagaaatttaaagccgatgagacatttgagttgaatgaggaattatccaacaaagattaccaccaaagatgcaagatccggggagctttaccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 ko04210 ko04212 ko04214 ko04217 ko05010 map03410 map04210 map04212 map04214 map04217 map05010
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_1 RVT_3 zf-RVT

Protein Analysis

371

Amino Acids

41.24

Weight (kDa)

9.36

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 38, 861
AclWI GGATC 2 cut(s) 803, 1090
AcoI YGGCCR 2 cut(s) 129, 573
AcsI RAATTY 1 cut(s) 1025
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 2 cut(s) 114, 387
AfiI CCNNNNNNNGG 4 cut(s) 232, 395, 571, 958
AgsI TTSAA 5 cut(s) 23, 71, 436, 826, 1054
AhlI ACTAGT 1 cut(s) 64
AluBI AGCT 7 cut(s) 199, 401, 634, 696, 838, 1005, 1106
AluI AGCT 7 cut(s) 199, 401, 634, 696, 838, 1005, 1106
Alw26I GTCTC 5 cut(s) 35, 142, 284, 803, 1034
AlwI GGATC 2 cut(s) 803, 1090
AoxI GGCC 6 cut(s) 121, 129, 483, 546, 573, 738
ApoI RAATTY 1 cut(s) 1025
AspS9I GGNCC 4 cut(s) 121, 483, 562, 961
AsuC2I CCSGG 1 cut(s) 1100
AsuHPI GGTGA 3 cut(s) 211, 329, 554
AvaII GGWCC 2 cut(s) 562, 961
AxyI CCTNAGG 1 cut(s) 779
BaeGI GKGCMC 1 cut(s) 788
BalI TGGCCA 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 369, 401
BccI CCATC 4 cut(s) 224, 533, 574, 952
BceAI ACGGC 1 cut(s) 588
BcnI CCSGG 1 cut(s) 1100
BcoDI GTCTC 5 cut(s) 35, 142, 284, 803, 1034
BcuI ACTAGT 1 cut(s) 64
BglI GCCNNNNNGGC 1 cut(s) 554
BisI GCNGC 1 cut(s) 861
BlsI GCNGC 1 cut(s) 862
Bme1390I CCNGG 1 cut(s) 1100
Bme18I GGWCC 2 cut(s) 562, 961
BmgT120I GGNCC 4 cut(s) 121, 483, 562, 961
BmiI GGNNCC 4 cut(s) 160, 180, 563, 564
BmrFI CCNGG 1 cut(s) 1100
BmsI GCATC 3 cut(s) 433, 508, 1079
BplI GAGNNNNNCTC 3 cut(s) 29, 183, 215
BpuEI CTTGAG 2 cut(s) 763, 983
BpuMI CCSGG 1 cut(s) 1100
BsaI GGTCTC 2 cut(s) 35, 142
BsaJI CCNNGG 1 cut(s) 1099
BsaWI WCCGGW 2 cut(s) 175, 715
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 395, 571, 958
Bse21I CCTNAGG 1 cut(s) 779
Bse3DI GCAATG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 1099
BseGI GGATG 3 cut(s) 517, 523, 946
BseLI CCNNNNNNNGG 4 cut(s) 232, 395, 571, 958
BseMI GCAATG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 411
BseSI GKGCMC 1 cut(s) 788
BseX3I CGGCCG 1 cut(s) 573
Bsh1285I CGRYCG 1 cut(s) 576
BshFI GGCC 6 cut(s) 123, 131, 485, 548, 575, 740
BsiEI CGRYCG 1 cut(s) 576
BsiSI CCGG 3 cut(s) 176, 716, 1099
BslFI GGGAC 2 cut(s) 575, 778
BslI CCNNNNNNNGG 4 cut(s) 232, 395, 571, 958
BsmAI GTCTC 5 cut(s) 35, 142, 284, 803, 1034
BsmFI GGGAC 2 cut(s) 575, 778
BsmI GAATGC 2 cut(s) 212, 832
BsnI GGCC 6 cut(s) 123, 131, 485, 548, 575, 740
Bso31I GGTCTC 2 cut(s) 35, 142
Bsp1286I GDGCHC 1 cut(s) 788
Bsp143I GATC 2 cut(s) 808, 1095
BspACI CCGC 2 cut(s) 38, 861
BspANI GGCC 6 cut(s) 123, 131, 485, 548, 575, 740
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 4 cut(s) 160, 180, 563, 564
BspPI GGATC 2 cut(s) 803, 1090
BspTNI GGTCTC 2 cut(s) 35, 142
BsrDI GCAATG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 1099
BssMI GATC 2 cut(s) 808, 1095
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 3 cut(s) 64, 862, 890
BstDEI CTNAG 2 cut(s) 531, 779
BstF5I GGATG 3 cut(s) 517, 523, 946
BstKTI GATC 2 cut(s) 811, 1098
BstMAI GTCTC 5 cut(s) 35, 142, 284, 803, 1034
BstMBI GATC 2 cut(s) 808, 1095
BstMCI CGRYCG 1 cut(s) 576
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 1098
BstSLI GKGCMC 1 cut(s) 788
BstX2I RGATCY 1 cut(s) 1095
BstYI RGATCY 1 cut(s) 1095
BstZI CGGCCG 1 cut(s) 573
Bsu36I CCTNAGG 1 cut(s) 779
BsuRI GGCC 6 cut(s) 123, 131, 485, 548, 575, 740
BtsCI GGATG 3 cut(s) 517, 523, 946
CciI TCATGA 1 cut(s) 622
Cfr13I GGNCC 4 cut(s) 121, 483, 562, 961
Csp6I GTAC 2 cut(s) 113, 386
CviAII CATG 9 cut(s) 97, 203, 254, 262, 487, 550, 623, 689, 1012
CviQI GTAC 2 cut(s) 113, 386
DdeI CTNAG 2 cut(s) 531, 779
DpnI GATC 2 cut(s) 810, 1097
DpnII GATC 2 cut(s) 808, 1095
DraI TTTAAA 1 cut(s) 1030
EaeI YGGCCR 2 cut(s) 129, 573
EagI CGGCCG 1 cut(s) 573
Eam1104I CTCTTC 3 cut(s) 64, 862, 890
EarI CTCTTC 3 cut(s) 64, 862, 890
EclXI CGGCCG 1 cut(s) 573
Eco147I AGGCCT 1 cut(s) 740
Eco31I GGTCTC 2 cut(s) 35, 142
Eco47I GGWCC 2 cut(s) 562, 961
Eco52I CGGCCG 1 cut(s) 573
Eco57I CTGAAG 1 cut(s) 507
Eco81I CCTNAGG 1 cut(s) 779
EcoO109I RGGNCCY 1 cut(s) 562
EcoT22I ATGCAT 1 cut(s) 690
FaeI CATG 9 cut(s) 100, 206, 257, 265, 490, 553, 626, 692, 1015
FalI AAGNNNNNCTT 2 cut(s) 887, 919
FaqI GGGAC 2 cut(s) 575, 778
FatI CATG 9 cut(s) 96, 202, 253, 261, 486, 549, 622, 688, 1011
FauNDI CATATG 1 cut(s) 684
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 3 cut(s) 524, 530, 953
Fsp4HI GCNGC 1 cut(s) 861
GluI GCNGC 1 cut(s) 861
HaeIII GGCC 6 cut(s) 123, 131, 485, 548, 575, 740
HapII CCGG 3 cut(s) 176, 716, 1099
Hin1II CATG 9 cut(s) 100, 206, 257, 265, 490, 553, 626, 692, 1015
HinfI GANTC 1 cut(s) 423
HpaII CCGG 3 cut(s) 176, 716, 1099
HphI GGTGA 3 cut(s) 211, 329, 554
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 395, 794
Hpy188III TCNNGA 6 cut(s) 234, 436, 599, 623, 645, 1000
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 6 cut(s) 177, 400, 442, 547, 586, 664
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 7 cut(s) 210, 335, 446, 688, 830, 1011, 1092
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 2 cut(s) 531, 779
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 9 cut(s) 100, 206, 257, 265, 490, 553, 626, 692, 1015
KflI GGGWCCC 1 cut(s) 562
Kzo9I GATC 2 cut(s) 808, 1095
LmnI GCTCC 5 cut(s) 158, 178, 204, 398, 1103
LpnPI CCDG 6 cut(s) 77, 189, 729, 846, 965, 1112
LweI GCATC 3 cut(s) 433, 508, 1079
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 322, 769
MalI GATC 2 cut(s) 810, 1097
MboI GATC 2 cut(s) 808, 1095
MboII GAAGA 8 cut(s) 51, 264, 354, 389, 686, 879, 904, 907
MflI RGATCY 1 cut(s) 1095
MhlI GDGCHC 1 cut(s) 788
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 3 cut(s) 992, 1025, 1061
MluNI TGGCCA 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 1092
Mox20I TGGCCA 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 690
MscI TGGCCA 1 cut(s) 131
MseI TTAA 3 cut(s) 330, 930, 1029
MslI CAYNNNNRTG 2 cut(s) 137, 687
Msp20I TGGCCA 1 cut(s) 131
MspI CCGG 3 cut(s) 176, 716, 1099
MspR9I CCNGG 1 cut(s) 1100
Mva1269I GAATGC 2 cut(s) 212, 832
MwoI GCNNNNNNNGC 1 cut(s) 554
NciI CCSGG 1 cut(s) 1100
NdeI CATATG 1 cut(s) 684
NdeII GATC 2 cut(s) 808, 1095
NlaIII CATG 9 cut(s) 100, 206, 257, 265, 490, 553, 626, 692, 1015
NlaIV GGNNCC 4 cut(s) 160, 180, 563, 564
NmuCI GTSAC 2 cut(s) 322, 769
NsiI ATGCAT 1 cut(s) 690
NspI RCATGY 1 cut(s) 265
PagI TCATGA 1 cut(s) 622
PceI AGGCCT 1 cut(s) 740
PctI GAATGC 2 cut(s) 212, 832
PfeI GAWTC 1 cut(s) 423
PkrI GCNGC 1 cut(s) 862
PpuMI RGGWCCY 1 cut(s) 562
Psp5II RGGWCCY 1 cut(s) 562
PspN4I GGNNCC 4 cut(s) 160, 180, 563, 564
PspPI GGNCC 4 cut(s) 121, 483, 562, 961
PspPPI RGGWCCY 1 cut(s) 562
PsuI RGATCY 1 cut(s) 1095
RsaI GTAC 2 cut(s) 114, 387
RsaNI GTAC 2 cut(s) 113, 386
RseI CAYNNNNRTG 2 cut(s) 137, 687
SaqAI TTAA 3 cut(s) 330, 930, 1029
SatI GCNGC 1 cut(s) 861
Sau3AI GATC 2 cut(s) 808, 1095
Sau96I GGNCC 4 cut(s) 121, 483, 562, 961
ScrFI CCNGG 1 cut(s) 1100
SduI GDGCHC 1 cut(s) 788
SfaNI GCATC 3 cut(s) 433, 508, 1079
SinI GGWCC 2 cut(s) 562, 961
SmiMI CAYNNNNRTG 2 cut(s) 137, 687
SmlI CTYRAG 3 cut(s) 14, 742, 998
SmoI CTYRAG 3 cut(s) 14, 742, 998
SpeI ACTAGT 1 cut(s) 64
Sse9I AATT 3 cut(s) 992, 1025, 1061
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 2 cut(s) 38, 861
SspI AATATT 1 cut(s) 927
StuI AGGCCT 1 cut(s) 740
StyD4I CCNGG 1 cut(s) 1098
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 1 cut(s) 232
TasI AATT 3 cut(s) 992, 1025, 1061
TauI GCSGC 1 cut(s) 863
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 3 cut(s) 330, 930, 1029
Tru9I TTAA 3 cut(s) 330, 930, 1029
TseFI GTSAC 2 cut(s) 322, 769
Tsp45I GTSAC 2 cut(s) 322, 769
TspDTI ATGAA 4 cut(s) 219, 566, 959, 1028
VpaK11BI GGWCC 2 cut(s) 562, 961
XapI RAATTY 1 cut(s) 1025
XbaI TCTAGA 1 cut(s) 644
XceI RCATGY 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.