Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013815.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Forward (+)

452 .. 1790

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013815.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgttgagaaagaagacttctagggatgaggatgtctcggaccctaaattagatggtgaggccatgaaggctagggacccatctacggccgataacacctctaggaaggttcttgatgacattagacccaccactaatgagtttgagccatctacttttagagaaaaatgggggaagaataaggagaaagatctacatatgcatggtagctctagggataggagtggtccggagtccaccaagaaattaagggagacttgcggagttgtgaagaagaaggaaattccaaagaggtatgattggcctccacctccaagttacaagctcgcttcttcaattgctagatgttttggaaattatggtgaggctagcacaattgttgtgggtggtaagaagacatcttttgagccaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.57

Weight (kDa)

9.44

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	336
AluBI	AGCT	2 cut(s)	210, 325
AluI	AGCT	2 cut(s)	210, 325
Alw26I	GTCTC	2 cut(s)	40, 248
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	3 cut(s)	60, 87, 302
ApoI	RAATTY	1 cut(s)	282
AspS9I	GGNCC	3 cut(s)	40, 76, 227
AsuHPI	GGTGA	2 cut(s)	68, 374
AsuNHI	GCTAGC	1 cut(s)	368
AvaII	GGWCC	3 cut(s)	40, 76, 227
BbsI	GAAGAC	2 cut(s)	20, 401
BccI	CCATC	3 cut(s)	47, 88, 157
BceAI	ACGGC	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	40, 248
BfaI	CTAG	6 cut(s)	21, 72, 102, 213, 342, 369
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	190
Bme18I	GGWCC	3 cut(s)	40, 76, 227
BmgT120I	GGNCC	3 cut(s)	40, 76, 227
BmiI	GGNNCC	3 cut(s)	42, 77, 78
BmtI	GCTAGC	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	20, 401
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseAI	TCCGGA	1 cut(s)	229
BseGI	GGATG	2 cut(s)	31, 37
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseX3I	CGGCCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	62, 89, 304
BsiEI	CGRYCG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	40, 248
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	3 cut(s)	62, 89, 304
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	3 cut(s)	62, 89, 304
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	3 cut(s)	42, 77, 78
BspOI	GCTAGC	1 cut(s)	372
BssMI	GATC	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	327, 370
BstF5I	GGATG	2 cut(s)	31, 37
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	40, 248
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstV2I	GAAGAC	2 cut(s)	20, 401
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	62, 89, 304
BtsCI	GGATG	2 cut(s)	31, 37
Cac8I	GCNNGC	2 cut(s)	327, 370
Cfr13I	GGNCC	3 cut(s)	40, 76, 227
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	2 cut(s)	64, 203
CviJI	RGCY	9 cut(s)	62, 71, 89, 148, 210, 304, 325, 368, 409
CviKI_1	RGCY	9 cut(s)	62, 71, 89, 148, 210, 304, 325, 368, 409
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
EclXI	CGGCCG	1 cut(s)	87
Eco47I	GGWCC	3 cut(s)	40, 76, 227
Eco52I	CGGCCG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	204
FaeI	CATG	2 cut(s)	67, 206
FaiI	YATR	6 cut(s)	65, 198, 200, 204, 297, 360
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	63, 202
FauNDI	CATATG	1 cut(s)	198
FokI	GGATG	2 cut(s)	38, 44
FspBI	CTAG	6 cut(s)	21, 72, 102, 213, 342, 369
HaeIII	GGCC	3 cut(s)	62, 89, 304
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	2 cut(s)	67, 206
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	68, 374
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	113, 230
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	3 cut(s)	61, 100, 271
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	67, 206
KflI	GGGWCCC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	1 cut(s)	243
MaeI	CTAG	6 cut(s)	21, 72, 102, 213, 342, 369
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	6 cut(s)	25, 187, 283, 286, 324, 406
MfeI	CAATTG	2 cut(s)	336, 375
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	6 cut(s)	47, 245, 282, 336, 355, 375
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	7 cut(s)	22, 52, 109, 285, 315, 321, 358
Mph1103I	ATGCAT	1 cut(s)	204
MroI	TCCGGA	1 cut(s)	229
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	1 cut(s)	230
MunI	CAATTG	2 cut(s)	336, 375
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	1 cut(s)	190
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	2 cut(s)	67, 206
NlaIV	GGNNCC	3 cut(s)	42, 77, 78
NsiI	ATGCAT	1 cut(s)	204
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	42, 77, 78
PspPI	GGNCC	3 cut(s)	40, 76, 227
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	248
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	3 cut(s)	40, 76, 227
SchI	GAGTC	1 cut(s)	242
SetI	ASST	7 cut(s)	101, 111, 212, 296, 313, 327, 415
SinI	GGWCC	3 cut(s)	40, 76, 227
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	6 cut(s)	47, 245, 282, 336, 355, 375
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	6 cut(s)	21, 72, 102, 213, 342, 369
TasI	AATT	6 cut(s)	47, 245, 282, 336, 355, 375
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	80
VpaK11BI	GGWCC	3 cut(s)	40, 76, 227
XapI	RAATTY	1 cut(s)	282
XspI	CTAG	6 cut(s)	21, 72, 102, 213, 342, 369
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.