FvH4_6g21790

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001407
Physical Location & Seq
Forward (+)
15380972 .. 15389700
8729 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21790.t1

Sequence Viewer

Length: 3285 bp
ATGGCCGGGACAAAGGGTCGCAATCCCGCGAGGGTGTATGAACGAAGCATCTTTTTCATATCAACCGATCATTCTAAGAAGCGGAAGGCAAAGACCATGAGGGAGTACACTAGTTCCGCTATTGTTGATCACCCTTCATGCATTGTGCTCCCTCAATGTGATCATCATTTTGAGATCAAGCCGTCTACTTTGAGCATTCTACCCATATTCAATGGCATGCCTTCGGATAACCCTTATGACCATATTGCGGAGTTTGAGCAAGTGTGTACTACCGTTCAACTAAATGGTCTCACTCCTAATGGCTTGAAGCTTAAATTGTTCCCCTTCACACTCAAGCACTATGCAAGACAGTGGTTGAGAAAGTTGCCTCCAAGATCTATACGAACATGGGTTGAGATGCAAGAGACTTTCTTGGGGAAGTATTATCCTCCTTCAAGAACTTCCATTGTTAGAGATGAGCTCATTGCATTTCGAGAACAACCTTTAGAGAGTTTCCATGAGTGTTGGGAGCGGTTTAAAGATCTTGAGATGTCATGTCCTCACGACACATTTGAGGAGCTTTCTCTTCATTGGGATGATCATGATGCAAGGAAACAACAAGCACCTAGTAAGGAGAGCACACCAAACCGAGGTGGAATGTATGAGGTTAAAGAAACATCATCCATGCCCTCTTTGCATGAGTTCAAAAGGCTAGAGGGCAAGACTGATCAATTTCTAAATCAAGTTAACGGGAATCCTCCTCAAGCACAAGTGAAGATGGCAACCTCTACCTCATGTTTGATTTGTGAGAGCTTAGCACATTCTACTCAAGAGTGTCACTTAGCTTCTCAATTTCCGGAGTTCATGGAGGAGAATGTGAATCAAGTTAGAGTGTACCAACCAGGAACCAAAGGAATGAACCTTACTCCAACACTTATAACCCCGGTTGGAAGAGTTACCCCAATTCCTCTTGGAGAGACCAAGGAGGTTCATCTAGTGCATTTCAAGGTGGAAAGCAAGGCTTTAGAGGTGGGCAAGCAAGTATATGAACTTAATTCTCATGGTCAATCCATCTCAAGTCATGGATTTCACGGTCAAAACACCCCTCCCGGGTTCGCACAAGGTGTTGGCTGTAATGGTGGCAAGTTTCAAGGCAATTCTAGCTCATTTCATGACCTAAATCTTCAAGGTTTTCCTACTCAAGCTCCAAGTGAACCAAAGAAGCCTAATCTTGAAGACTTGATGGGAGGTCATGGATTTCATGGTCACAACACCCCTCCCGGGTTTACACAAGATGGTGGCTATAATGGTGGCAACTTTCAAGGCAATTCTAGCTCATTTCAAGACCCAAATCTTCAAGGTTTTCCTACTCAAGCTCCAAGTGAACCAAAGAAGCCTACTTTAGAAGACTTGATGGGAGAGTTCCTAAAGGCTCAAAACTCTACTAATGAGGAGACAAGGCAAAACATTTCTACACTAGCTCAAGGGTATCAAACCTTAAAGCAAGGCCTGGCTAGACTAGAGATCCAAGTGGGTCAAATGGCCACAAACACGAGTGAGAGACCAAAGGGAGCCTTACCCTCACAACCGGAGCCGAATCCAAGAGGCAAAGTCCATGAATGCAATGCCATCACCACCCTACGTTCGGGAAAGGAGGATGGGACCGGAAGGGAAGAAAATGTACCTTCCGGAAATTTGGATTTGAGGAGTGATGTGACCTTGTATACAAAAAGGAGAAATAAGGGGTGGATAAGGAAGCCGGAGGGGAAGAAAATGTACCTTCCGGAGGAGCTACTCTTGAATGATGCAAGCAAGTATGAATTGATAGATAGTGGCAAGGAAAGAGCTTTGTTGAAAAAGAAGACTTCTAGGGATGAGGATGTCTCGGCTCCGAGATTAGATGGTGAGGCCGTGACGGCTAGGGACCCATCTAAGGTCGATGACACCTCTAGGAAGATTCTTGATGAGTTTGACCCATCTTCTTCTAGAGAAAAAGAGGGCAGGAATAAGATGGAAGACCAACTTATACATGGTAGCTCTAAGAATAGGAATGGTCTGGTCTACTCTTCACTGGGCAAGGCCTTGAGGGCTAAGAACCCTAGTGGGACCGTGACCACCCTTAGGGGCACCACCGGAAGTCTCACATTTGATCCAGCTCTTGATTTGAATGTGCCGGAGCCAACACTTCCTTACCCTAATGCCGCAAGGAGAGATAATTCAAAGAGAAGCAAGAAGAAGAGTGGGTTGATGAGGGAGATACATGACATATTCAAAAAAGGTGGATGTGAATATCCCATTGGTGGACCTCATTCGTCAAGTGCTAGTAAATTCAAAGCCGATGAGACATTTGAGTTGAATGAGGAAGTTAGTGCAATAATTCAAAGAAGGCTACCACCAAAGATGCATGATCCGGGGAGCTTTACAATAGGGTGTATTATTGGTGAGAAAGTGTTTGAAGGAGCTCTCATGGACTTAGGGGCGAGTGTTAACTTGATGCCCTTGGCTATATTCCGGAAGCTAGAGATTGGTGAGTTGAAGCCCACATCTATTAGATTGCAACTAGCGGATCATAGCACAAGGAGGCCGGTGGGAGTAGTGGAGGATGTGCTTGTGAGAGTCAATAAGTTCATTCTACCGACCGACTTTGTAGTGTTGGACATGGGTGAAGACCCCTACCTTGACAAGGAGTTACCTATCATTCTAGGCCAACCATTCATGGCAACGGTGGGTGTGAAGATTAATGTGTTGAAGGGTACCATTAGACTCAAGGTATTGGGTGAGAAAGTGAAGATCAATGTGTGCAATCCATTATATCCGCCGGACATCATGAAGAAGCATGATGATGCCATTTCTATTCCTACATTAGAGTCTACCATTGAGCTTCCAAAGCCTACATCCCCTAACCTTGAGACTTGTGAGCAAGAAAACAAGAAAAGTTCTCTAATGATGAGTAAGGCACAAATGAAGTCTACCGAGACTTGTGGAGTTTTGAACAAGATGGAAATGCGTAAGAGGTATAATTGGCCTCCACCTCCAAGCAACAAGCTCGCTTCTTCAATTGCTAGGTGTTTTGGACATGATAGTGGGGCTAGCACAAGTGTTGTGGGTGTCTTTCAATCCCAATCCGACACAGCCTCCGCTAACCTCACCGCTGATTCCTCCTCGCCGCTGCGCTCGTCAGTCTTTCAATCCCAATCCAACACAGCCTCCGCTAACCTCACCGCCGATTCCTCCTCGCCTCGGCGCCCACTTCCTCCTCGCCTCTACGCTCGTCAGGCAAGTTCTCCTTGCTCGATTTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve

Protein Analysis

1095

Amino Acids

121.29

Weight (kDa)

8.56

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 105 - 186 7.9e-14 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 917
Acc65I GGTACC 1 cut(s) 2732
AccB1I GGYRCC 3 cut(s) 2105, 2732, 3222
AccBSI CCGCTC 1 cut(s) 511
AccI GTMKAC 5 cut(s) 185, 1703, 2040, 2849, 2948
AccII CGCG 1 cut(s) 29
AccIII TCCGGA 4 cut(s) 835, 1667, 1762, 2490
AclWI GGATC 4 cut(s) 1498, 2123, 2381, 2553
AcoI YGGCCR 2 cut(s) 3, 1521
AcsI RAATTY 2 cut(s) 1672, 2306
AcyI GRCGYC 1 cut(s) 3223
AdeI CACNNNGTG 1 cut(s) 1103
AfaI GTAC 6 cut(s) 107, 268, 875, 1662, 1757, 2734
AhdI GACNNNNNGTC 1 cut(s) 15
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 2 cut(s) 880, 1488
AjuI GAANNNNNNNTTGG 2 cut(s) 2259, 2291
Alw21I GWGCWC 4 cut(s) 150, 462, 620, 2443
AlwI GGATC 4 cut(s) 1498, 2123, 2381, 2553
Ama87I CYCGRG 2 cut(s) 1088, 1259
Aor13HI TCCGGA 4 cut(s) 835, 1667, 1762, 2490
AoxI GGCC 8 cut(s) 3, 1486, 1521, 1887, 2058, 2561, 2683, 3002
ApeKI GCWGC 1 cut(s) 3148
ApoI RAATTY 2 cut(s) 1672, 2306
AseI ATTAAT 1 cut(s) 2718
Asp718I GGTACC 1 cut(s) 2732
AspLEI GCGC 2 cut(s) 3153, 3225
AspS9I GGNCC 4 cut(s) 1641, 1903, 2085, 2282
AsuC2I CCSGG 7 cut(s) 7, 923, 1089, 1090, 1260, 1261, 2391
AsuHPI GGTGA 9 cut(s) 122, 1603, 1895, 2432, 2519, 2654, 2768, 3118, 3190
AsuNHI GCTAGC 1 cut(s) 3068
AvaI CYCGRG 2 cut(s) 1088, 1259
AvaII GGWCC 4 cut(s) 1641, 1903, 2085, 2282
AxyI CCTNAGG 1 cut(s) 2099
BaeGI GKGCMC 1 cut(s) 2108
BalI TGGCCA 1 cut(s) 1523
BanI GGYRCC 3 cut(s) 2105, 2732, 3222
BanII GRGCYC 2 cut(s) 462, 2443
BarI GAAGNNNNNNTAC 4 cut(s) 1644, 1676, 1739, 1771
BauI CACGAG 1 cut(s) 1531
BbsI GAAGAC 5 cut(s) 1221, 1392, 1847, 2001, 2652
Bbv12I GWGCWC 4 cut(s) 150, 462, 620, 2443
BbvI GCAGC 1 cut(s) 3135
BceAI ACGGC 3 cut(s) 166, 1874, 1911
BcgI CGANNNNNNTGC 2 cut(s) 3007, 3041
BciT130I CCWGG 2 cut(s) 882, 1490
BclI TGATCA 4 cut(s) 127, 160, 577, 706
BcnI CCSGG 7 cut(s) 7, 923, 1089, 1090, 1260, 1261, 2391
BcuI ACTAGT 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 3226
BglI GCCNNNNNGGC 2 cut(s) 1895, 2066
BglII AGATCT 2 cut(s) 374, 520
BisI GCNGC 3 cut(s) 2181, 3146, 3149
BlpI GCTNAGC 1 cut(s) 793
BlsI GCNGC 3 cut(s) 2182, 3147, 3150
Bme1390I CCNGG 9 cut(s) 7, 882, 923, 1089, 1090, 1260, 1261, 1490, 2391
Bme18I GGWCC 4 cut(s) 1641, 1903, 2085, 2282
BmeRI GACNNNNNGTC 1 cut(s) 15
BmeT110I CYCGRG 2 cut(s) 1088, 1259
BmgT120I GGNCC 4 cut(s) 1641, 1903, 2085, 2282
BmrFI CCNGG 9 cut(s) 7, 882, 923, 1089, 1090, 1260, 1261, 1490, 2391
BmrI ACTGGG 1 cut(s) 2060
BmsI GCATC 7 cut(s) 57, 387, 574, 1774, 2370, 2463, 2812
BmtI GCTAGC 1 cut(s) 3072
BmuI ACTGGG 1 cut(s) 2060
BpiI GAAGAC 5 cut(s) 1221, 1392, 1847, 2001, 2652
BplI GAGNNNNNCTC 4 cut(s) 444, 476, 1847, 1879
Bpu1102I GCTNAGC 1 cut(s) 793
BpuMI CCSGG 7 cut(s) 7, 923, 1089, 1090, 1260, 1261, 2391
BsaHI GRCGYC 1 cut(s) 3223
BsaI GGTCTC 3 cut(s) 293, 950, 1534
BsaJI CCNNGG 8 cut(s) 628, 921, 960, 1088, 1259, 2390, 2478, 3218
BsaWI WCCGGW 7 cut(s) 835, 1567, 1643, 1667, 1762, 2111, 2490
BsaXI ACNNNNNCTCC 8 cut(s) 1168, 1198, 1339, 1369, 3098, 3128, 3170, 3200
Bse118I RCCGGY 1 cut(s) 2563
Bse1I ACTGG 1 cut(s) 2055
Bse21I CCTNAGG 1 cut(s) 2099
Bse3DI GCAATG 2 cut(s) 462, 1609
BseAI TCCGGA 4 cut(s) 835, 1667, 1762, 2490
BseBI CCWGG 2 cut(s) 882, 1490
BseDI CCNNGG 8 cut(s) 628, 921, 960, 1088, 1259, 2390, 2478, 3218
BseGI GGATG 8 cut(s) 580, 659, 1642, 1858, 1864, 2267, 2587, 2873
BseMI GCAATG 2 cut(s) 462, 1609
BseNI ACTGG 1 cut(s) 2055
BseRI GAGGAG 9 cut(s) 569, 729, 863, 1445, 1699, 1781, 3130, 3202, 3225
BseSI GKGCMC 1 cut(s) 2108
BseXI GCAGC 1 cut(s) 3135
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 2619
BshFI GGCC 8 cut(s) 5, 1488, 1523, 1889, 2060, 2563, 2685, 3004
BshNI GGYRCC 3 cut(s) 2105, 2732, 3222
BsiEI CGRYCG 1 cut(s) 2619
BsiHKAI GWGCWC 4 cut(s) 150, 462, 620, 2443
BsiHKCI CYCGRG 2 cut(s) 1088, 1259
BslFI GGGAC 4 cut(s) 22, 1654, 1916, 2098
BsmFI GGGAC 4 cut(s) 22, 1654, 1916, 2098
BsmI GAATGC 2 cut(s) 195, 1604
BsnI GGCC 8 cut(s) 5, 1488, 1523, 1889, 2060, 2563, 2685, 3004
Bso31I GGTCTC 3 cut(s) 293, 950, 1534
BsoBI CYCGRG 2 cut(s) 1088, 1259
Bsp1286I GDGCHC 5 cut(s) 150, 462, 620, 2108, 2443
Bsp13I TCCGGA 4 cut(s) 835, 1667, 1762, 2490
Bsp1720I GCTNAGC 1 cut(s) 793
BspANI GGCC 8 cut(s) 5, 1488, 1523, 1889, 2060, 2563, 2685, 3004
BspEI TCCGGA 4 cut(s) 835, 1667, 1762, 2490
BspFNI CGCG 1 cut(s) 29
BspHI TCATGA 3 cut(s) 580, 1150, 2805
BspOI GCTAGC 1 cut(s) 3072
BspPI GGATC 4 cut(s) 1498, 2123, 2381, 2553
BspT107I GGYRCC 3 cut(s) 2105, 2732, 3222
BspTNI GGTCTC 3 cut(s) 293, 950, 1534
BsrBI CCGCTC 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 462, 1609
BsrFI RCCGGY 1 cut(s) 2563
BsrI ACTGG 1 cut(s) 2055
BssAI RCCGGY 1 cut(s) 2563
BssECI CCNNGG 8 cut(s) 628, 921, 960, 1088, 1259, 2390, 2478, 3218
BssNAI GTATAC 1 cut(s) 1704
BssNI GRCGYC 1 cut(s) 3223
BssSI CACGAG 1 cut(s) 1531
BssT1I CCWWGG 2 cut(s) 960, 2478
Bst1107I GTATAC 1 cut(s) 1704
Bst2BI CACGAG 1 cut(s) 1531
Bst2UI CCWGG 2 cut(s) 882, 1490
Bst4CI ACNGT 5 cut(s) 274, 351, 1073, 2089, 2704
Bst6I CTCTTC 4 cut(s) 570, 925, 2050, 2210
BstACI GRCGYC 1 cut(s) 3223
BstC8I GCNNGC 5 cut(s) 218, 1016, 1789, 3027, 3070
BstDEI CTNAG 8 cut(s) 75, 793, 820, 1911, 2019, 2070, 2099, 2452
BstENI CCTNNNNNAGG 2 cut(s) 1763, 2660
BstF5I GGATG 8 cut(s) 580, 659, 1642, 1858, 1864, 2267, 2587, 2873
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 3226
BstHHI GCGC 2 cut(s) 3153, 3225
BstMCI CGRYCG 1 cut(s) 2619
BstMWI GCNNNNNNNGC 7 cut(s) 673, 1140, 1311, 1895, 2066, 2866, 3254
BstNI CCWGG 2 cut(s) 882, 1490
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 9 cut(s) 5, 880, 921, 1087, 1088, 1258, 1259, 1488, 2389
BstSLI GKGCMC 1 cut(s) 2108
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 3135
BstV2I GAAGAC 5 cut(s) 1221, 1392, 1847, 2001, 2652
BstX2I RGATCY 3 cut(s) 374, 520, 1503
BstYI RGATCY 3 cut(s) 374, 520, 1503
BstZ17I GTATAC 1 cut(s) 1704
Bsu36I CCTNAGG 1 cut(s) 2099
BsuRI GGCC 8 cut(s) 5, 1488, 1523, 1889, 2060, 2563, 2685, 3004
BtsCI GGATG 8 cut(s) 580, 659, 1642, 1858, 1864, 2267, 2587, 2873
BtsIMutI CAGTG 2 cut(s) 356, 2048
Cac8I GCNNGC 5 cut(s) 218, 1016, 1789, 3027, 3070
CciI TCATGA 3 cut(s) 580, 1150, 2805
CfoI GCGC 2 cut(s) 3153, 3225
Cfr10I RCCGGY 1 cut(s) 2563
Cfr13I GGNCC 4 cut(s) 1641, 1903, 2085, 2282
Cfr9I CCCGGG 2 cut(s) 1088, 1259
Csp6I GTAC 6 cut(s) 106, 267, 874, 1661, 1756, 2733
CspCI CAANNNNNGTGG 4 cut(s) 2239, 2274, 3063, 3098
CviQI GTAC 6 cut(s) 106, 267, 874, 1661, 1756, 2733
DdeI CTNAG 8 cut(s) 75, 793, 820, 1911, 2019, 2070, 2099, 2452
DinI GGCGCC 1 cut(s) 3224
DraI TTTAAA 1 cut(s) 517
DraIII CACNNNGTG 1 cut(s) 1103
DriI GACNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 2 cut(s) 3, 1521
Eam1104I CTCTTC 4 cut(s) 570, 925, 2050, 2210
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 4 cut(s) 570, 925, 2050, 2210
EciI GGCGGA 1 cut(s) 2784
Ecl136II GAGCTC 2 cut(s) 460, 2441
Eco130I CCWWGG 2 cut(s) 960, 2478
Eco147I AGGCCT 2 cut(s) 1488, 2060
Eco24I GRGCYC 2 cut(s) 462, 2443
Eco31I GGTCTC 3 cut(s) 293, 950, 1534
Eco47I GGWCC 4 cut(s) 1641, 1903, 2085, 2282
Eco53kI GAGCTC 2 cut(s) 460, 2441
Eco81I CCTNAGG 1 cut(s) 2099
Eco88I CYCGRG 2 cut(s) 1088, 1259
EcoICRI GAGCTC 2 cut(s) 460, 2441
EcoNI CCTNNNNNAGG 2 cut(s) 1763, 2660
EcoO109I RGGNCCY 1 cut(s) 1903
EcoRII CCWGG 2 cut(s) 880, 1488
EcoT14I CCWWGG 2 cut(s) 960, 2478
EcoT22I ATGCAT 2 cut(s) 143, 2385
EcoT38I GRGCYC 2 cut(s) 462, 2443
EgeI GGCGCC 1 cut(s) 3224
EheI GGCGCC 1 cut(s) 3224
ErhI CCWWGG 2 cut(s) 960, 2478
FalI AAGNNNNNCTT 8 cut(s) 985, 1017, 1538, 1570, 1986, 2018, 3250, 3282
FaqI GGGAC 4 cut(s) 22, 1654, 1916, 2098
FauI CCCGC 1 cut(s) 34
FbaI TGATCA 4 cut(s) 127, 160, 577, 706
FblI GTMKAC 5 cut(s) 185, 1703, 2040, 2849, 2948
Fnu4HI GCNGC 3 cut(s) 2181, 3146, 3149
FokI GGATG 8 cut(s) 587, 646, 1649, 1865, 1871, 2274, 2594, 2860
FriOI GRGCYC 2 cut(s) 462, 2443
Fsp4HI GCNGC 3 cut(s) 2181, 3146, 3149
GlaI GCGC 2 cut(s) 3152, 3224
GluI GCNGC 3 cut(s) 2181, 3146, 3149
HaeII RGCGCY 1 cut(s) 3226
HaeIII GGCC 8 cut(s) 5, 1488, 1523, 1889, 2060, 2563, 2685, 3004
HhaI GCGC 2 cut(s) 3153, 3225
Hin1I GRCGYC 1 cut(s) 3223
Hin6I GCGC 2 cut(s) 3151, 3223
HinP1I GCGC 2 cut(s) 3151, 3223
HincII GTYRAC 2 cut(s) 727, 2467
HindII GTYRAC 2 cut(s) 727, 2467
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 9 cut(s) 733, 859, 1576, 1936, 2595, 2742, 2846, 3134, 3206
HpaI GTTAAC 2 cut(s) 727, 2467
HphI GGTGA 9 cut(s) 122, 1603, 1895, 2432, 2519, 2654, 2768, 3118, 3190
Hpy188I TCNGA 3 cut(s) 226, 1872, 3106
HpyCH4III ACNGT 5 cut(s) 274, 351, 1073, 2089, 2704
HpyCH4IV ACGT 1 cut(s) 1621
HpyF10VI GCNNNNNNNGC 7 cut(s) 673, 1140, 1311, 1895, 2066, 2866, 3254
HpyF3I CTNAG 8 cut(s) 75, 793, 820, 1911, 2019, 2070, 2099, 2452
HpySE526I ACGT 1 cut(s) 1621
Hsp92I GRCGYC 1 cut(s) 3223
HspAI GCGC 2 cut(s) 3151, 3223
KasI GGCGCC 1 cut(s) 3222
KflI GGGWCCC 1 cut(s) 1903
Kpn2I TCCGGA 4 cut(s) 835, 1667, 1762, 2490
KpnI GGTACC 1 cut(s) 2736
Ksp22I TGATCA 4 cut(s) 127, 160, 577, 706
KspAI GTTAAC 2 cut(s) 727, 2467
Lsp1109I GCAGC 1 cut(s) 3135
LweI GCATC 7 cut(s) 57, 387, 574, 1774, 2370, 2463, 2812
MaeII ACGT 1 cut(s) 1621
MaeIII GTNAC 7 cut(s) 815, 934, 1244, 1693, 1891, 2089, 2667
MbiI CCGCTC 1 cut(s) 511
MfeI CAATTG 1 cut(s) 3036
MflI RGATCY 3 cut(s) 374, 520, 1503
MhlI GDGCHC 5 cut(s) 150, 462, 620, 2108, 2443
MlsI TGGCCA 1 cut(s) 1523
MluNI TGGCCA 1 cut(s) 1523
Mly113I GGCGCC 1 cut(s) 3223
MlyI GAGTC 3 cut(s) 2604, 2736, 2855
MmeI TCCRAC 5 cut(s) 907, 932, 2613, 3129, 3201
Mox20I TGGCCA 1 cut(s) 1523
Mph1103I ATGCAT 2 cut(s) 143, 2385
MroI TCCGGA 4 cut(s) 835, 1667, 1762, 2490
MscI TGGCCA 1 cut(s) 1523
MseI TTAA 8 cut(s) 312, 516, 648, 726, 1032, 1478, 2466, 2718
MslI CAYNNNNRTG 3 cut(s) 573, 2820, 3060
Msp20I TGGCCA 1 cut(s) 1523
MspA1I CMGCKG 2 cut(s) 3131, 3148
MspR9I CCNGG 9 cut(s) 7, 882, 923, 1089, 1090, 1260, 1261, 1490, 2391
MunI CAATTG 1 cut(s) 3036
Mva1269I GAATGC 2 cut(s) 195, 1604
MvaI CCWGG 2 cut(s) 882, 1490
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 7 cut(s) 673, 1140, 1311, 1895, 2066, 2866, 3254
NarI GGCGCC 1 cut(s) 3223
NciI CCSGG 7 cut(s) 7, 923, 1089, 1090, 1260, 1261, 2391
NheI GCTAGC 1 cut(s) 3068
NmeAIII GCCGAG 2 cut(s) 1844, 3199
NmuCI GTSAC 5 cut(s) 815, 1244, 1693, 1891, 2089
NsiI ATGCAT 2 cut(s) 143, 2385
NspI RCATGY 1 cut(s) 220
PaeI GCATGC 1 cut(s) 220
PagI TCATGA 3 cut(s) 580, 1150, 2805
PceI AGGCCT 2 cut(s) 1488, 2060
PctI GAATGC 2 cut(s) 195, 1604
PfeI GAWTC 6 cut(s) 733, 859, 1576, 1936, 3134, 3206
PkrI GCNGC 3 cut(s) 2182, 3147, 3150
PleI GAGTC 3 cut(s) 2603, 2736, 2854
PluTI GGCGCC 1 cut(s) 3226
PpsI GAGTC 3 cut(s) 2603, 2736, 2854
PpuMI RGGWCCY 1 cut(s) 1903
PshBI ATTAAT 1 cut(s) 2718
PsiI TTATAA 1 cut(s) 917
Psp124BI GAGCTC 2 cut(s) 462, 2443
Psp5II RGGWCCY 1 cut(s) 1903
Psp6I CCWGG 2 cut(s) 880, 1488
PspGI CCWGG 2 cut(s) 880, 1488
PspPI GGNCC 4 cut(s) 1641, 1903, 2085, 2282
PspPPI RGGWCCY 1 cut(s) 1903
PsuI RGATCY 3 cut(s) 374, 520, 1503
RsaI GTAC 6 cut(s) 107, 268, 875, 1662, 1757, 2734
RsaNI GTAC 6 cut(s) 106, 267, 874, 1661, 1756, 2733
RseI CAYNNNNRTG 3 cut(s) 573, 2820, 3060
SacI GAGCTC 2 cut(s) 462, 2443
SaqAI TTAA 8 cut(s) 312, 516, 648, 726, 1032, 1478, 2466, 2718
SatI GCNGC 3 cut(s) 2181, 3146, 3149
Sau96I GGNCC 4 cut(s) 1641, 1903, 2085, 2282
SchI GAGTC 3 cut(s) 2604, 2736, 2855
ScrFI CCNGG 9 cut(s) 7, 882, 923, 1089, 1090, 1260, 1261, 1490, 2391
SduI GDGCHC 5 cut(s) 150, 462, 620, 2108, 2443
SfaNI GCATC 7 cut(s) 57, 387, 574, 1774, 2370, 2463, 2812
SfoI GGCGCC 1 cut(s) 3224
SinI GGWCC 4 cut(s) 1641, 1903, 2085, 2282
SmaI CCCGGG 2 cut(s) 1090, 1261
SmiMI CAYNNNNRTG 3 cut(s) 573, 2820, 3060
SpeI ACTAGT 1 cut(s) 110
SphI GCATGC 1 cut(s) 220
SseBI AGGCCT 2 cut(s) 1488, 2060
SspDI GGCGCC 1 cut(s) 3222
SstI GAGCTC 2 cut(s) 462, 2443
StuI AGGCCT 2 cut(s) 1488, 2060
StyD4I CCNGG 9 cut(s) 5, 880, 921, 1087, 1088, 1258, 1259, 1488, 2389
StyI CCWWGG 2 cut(s) 960, 2478
TaaI ACNGT 5 cut(s) 274, 351, 1073, 2089, 2704
TaiI ACGT 1 cut(s) 1624
TaqI TCGA 3 cut(s) 472, 1917, 3272
TaqII GACCGA 1 cut(s) 2633
TatI WGTACW 2 cut(s) 105, 266
TauI GCSGC 2 cut(s) 2183, 3148
TfiI GAWTC 6 cut(s) 733, 859, 1576, 1936, 3134, 3206
Tru1I TTAA 8 cut(s) 312, 516, 648, 726, 1032, 1478, 2466, 2718
Tru9I TTAA 8 cut(s) 312, 516, 648, 726, 1032, 1478, 2466, 2718
TscAI CASTG 2 cut(s) 356, 2055
TseFI GTSAC 5 cut(s) 815, 1244, 1693, 1891, 2089
TseI GCWGC 1 cut(s) 3148
Tsp45I GTSAC 5 cut(s) 815, 1244, 1693, 1891, 2089
TspMI CCCGGG 2 cut(s) 1088, 1259
TspRI CASTG 2 cut(s) 356, 2055
VpaK11BI GGWCC 4 cut(s) 1641, 1903, 2085, 2282
VspI ATTAAT 1 cut(s) 2718
XagI CCTNNNNNAGG 2 cut(s) 1763, 2660
XapI RAATTY 2 cut(s) 1672, 2306
XbaI TCTAGA 1 cut(s) 1964
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 2006
XmaI CCCGGG 2 cut(s) 1088, 1259
XmiI GTMKAC 5 cut(s) 185, 1703, 2040, 2849, 2948
Zsp2I ATGCAT 2 cut(s) 143, 2385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.