Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001687.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

125239 .. 126565

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001687.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atggataaggtagccggaggggaagaaaatgtaccctccggagaagctattcttggtaaaggttatggtttcttgtcctttgagaacaatgcaagcaaatatggtttgattgatagtggcaaagaaagggccatgttgagaaagaagacttctagggatgaggatgtctcagaccctaaattagatggtgaggccatgaaggctagggacccatctacgaccgataacacctctaggaaggttcttgatgacattagacccaccactaatgagtttgagcaatctacttttagagaaaaaggggggaagaataaggaggaagatctacatatgcatggtagctctagggataggagtggtccggtctactcatcactaggcgaggccttgaaggctaagaaccctagtgggaccgtgactacccttaggggcactactggaagtctcacatttgatccacctcttgatttgaatacattggagccaccacttccttatcctaatgccgcaagaagagataattcaaagaggggtaagaagaagagtggcttaatgagggagatacaagaaatatttaagaaagtggatggtaatgaagccaagagtgagcggatctttggacctttgaatccttccaagcctacaatccgtgcacaaaatcatttctcacctatttggggctatgaccatgatccaccattgaagcatgatgatgtagttcccacttctactttggagcctagtattgagcttgaaaagcaaacaacccatgctcttgagacttatgagcaacacaagaagaaaagttcaccattgagtgaagcacaagaggagtccatcaagaaattaagggagacttgcggagttgtgaagaagaaggaaattccaaagaggaatgattggcctccacctcaaagctacaagctcgcttcttcaattgctagatgttttggaaatgatggtgaggctagcacaattgttgtgggtggtaagaagacatcctttaagccaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

37.38

Weight (kDa)

8.89

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	610
AccI	GTMKAC	1 cut(s)	366
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	3 cut(s)	507, 610, 861
AclWI	GGATC	3 cut(s)	449, 620, 686
AcsI	RAATTY	1 cut(s)	882
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgsI	TTSAA	7 cut(s)	391, 472, 525, 628, 703, 755, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	5 cut(s)	47, 342, 751, 918, 925
AluI	AGCT	5 cut(s)	47, 342, 751, 918, 925
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	4 cut(s)	172, 449, 773, 848
Alw44I	GTGCAC	1 cut(s)	651
AlwI	GGATC	3 cut(s)	449, 620, 686
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	4 cut(s)	129, 192, 384, 902
ApaLI	GTGCAC	1 cut(s)	651
ApoI	RAATTY	1 cut(s)	882
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	5 cut(s)	129, 208, 359, 411, 620
AsuHPI	GGTGA	4 cut(s)	200, 660, 801, 974
AsuNHI	GCTAGC	1 cut(s)	968
AvaII	GGWCC	4 cut(s)	208, 359, 411, 620
AxyI	CCTNAGG	1 cut(s)	425
BaeGI	GKGCMC	2 cut(s)	434, 655
BarI	GAAGNNNNNNTAC	2 cut(s)	15, 47
BbsI	GAAGAC	2 cut(s)	152, 1001
Bbv12I	GWGCWC	1 cut(s)	655
BccI	CCATC	5 cut(s)	179, 220, 581, 845, 953
BcoDI	GTCTC	4 cut(s)	172, 449, 773, 848
BfaI	CTAG	9 cut(s)	153, 204, 234, 345, 377, 405, 741, 942, 969
BglI	GCCNNNNNGGC	2 cut(s)	200, 392
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme18I	GGWCC	4 cut(s)	208, 359, 411, 620
BmgT120I	GGNCC	5 cut(s)	129, 208, 359, 411, 620
BmiI	GGNNCC	5 cut(s)	209, 210, 412, 483, 738
BmtI	GCTAGC	1 cut(s)	972
BpiI	GAAGAC	2 cut(s)	152, 1001
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpuEI	CTTGAG	1 cut(s)	797
BsaWI	WCCGGW	2 cut(s)	38, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse1I	ACTGG	1 cut(s)	442
Bse21I	CCTNAGG	1 cut(s)	425
BseAI	TCCGGA	1 cut(s)	38
BseGI	GGATG	4 cut(s)	163, 169, 592, 998
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	1 cut(s)	845
BseSI	GKGCMC	2 cut(s)	434, 655
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	4 cut(s)	131, 194, 386, 904
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	655
BsiSI	CCGG	3 cut(s)	15, 39, 362
BslFI	GGGAC	2 cut(s)	221, 424
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmAI	GTCTC	4 cut(s)	172, 449, 773, 848
BsmFI	GGGAC	2 cut(s)	221, 424
BsnI	GGCC	4 cut(s)	131, 194, 386, 904
Bsp1286I	GDGCHC	2 cut(s)	434, 655
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	4 cut(s)	322, 454, 612, 691
BspACI	CCGC	3 cut(s)	507, 610, 861
BspANI	GGCC	4 cut(s)	131, 194, 386, 904
BspCNI	CTCAG	1 cut(s)	182
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	5 cut(s)	209, 210, 412, 483, 738
BspOI	GCTAGC	1 cut(s)	972
BspPI	GGATC	3 cut(s)	449, 620, 686
BsrBI	CCGCTC	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	442
BssMI	GATC	4 cut(s)	322, 454, 612, 691
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	2 cut(s)	508, 536
BstC8I	GCNNGC	3 cut(s)	94, 927, 970
BstDEI	CTNAG	3 cut(s)	169, 396, 425
BstF5I	GGATG	4 cut(s)	163, 169, 592, 998
BstKTI	GATC	4 cut(s)	325, 457, 615, 694
BstMAI	GTCTC	4 cut(s)	172, 449, 773, 848
BstMBI	GATC	4 cut(s)	322, 454, 612, 691
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 392, 757
BstSLI	GKGCMC	2 cut(s)	434, 655
BstV2I	GAAGAC	2 cut(s)	152, 1001
BstX2I	RGATCY	2 cut(s)	322, 612
BstYI	RGATCY	2 cut(s)	322, 612
Bsu36I	CCTNAGG	1 cut(s)	425
BsuRI	GGCC	4 cut(s)	131, 194, 386, 904
BtsCI	GGATG	4 cut(s)	163, 169, 592, 998
Cac8I	GCNNGC	3 cut(s)	94, 927, 970
Cfr13I	GGNCC	5 cut(s)	129, 208, 359, 411, 620
Csp6I	GTAC	1 cut(s)	32
CspCI	CAANNNNNGTGG	2 cut(s)	963, 998
CviAII	CATG	6 cut(s)	133, 196, 335, 689, 707, 770
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	3 cut(s)	169, 396, 425
DpnI	GATC	4 cut(s)	324, 456, 614, 693
DpnII	GATC	4 cut(s)	322, 454, 612, 691
Eam1104I	CTCTTC	2 cut(s)	508, 536
EarI	CTCTTC	2 cut(s)	508, 536
Eco147I	AGGCCT	1 cut(s)	386
Eco47I	GGWCC	4 cut(s)	208, 359, 411, 620
Eco81I	CCTNAGG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	336
FaeI	CATG	6 cut(s)	136, 199, 338, 692, 710, 773
FalI	AAGNNNNNCTT	7 cut(s)	36, 68, 533, 565, 841, 873, 986
FaqI	GGGAC	2 cut(s)	221, 424
FatI	CATG	6 cut(s)	132, 195, 334, 688, 706, 769
FauNDI	CATATG	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	4 cut(s)	170, 176, 599, 985
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	9 cut(s)	153, 204, 234, 345, 377, 405, 741, 942, 969
GluI	GCNGC	1 cut(s)	507
HaeIII	GGCC	4 cut(s)	131, 194, 386, 904
HapII	CCGG	3 cut(s)	15, 39, 362
Hin1II	CATG	6 cut(s)	136, 199, 338, 692, 710, 773
HinfI	GANTC	2 cut(s)	628, 833
HpaII	CCGG	3 cut(s)	15, 39, 362
HphI	GGTGA	4 cut(s)	200, 660, 801, 974
Hpy166II	GTNNAC	3 cut(s)	367, 653, 809
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	5 cut(s)	39, 245, 464, 776, 841
Hpy8I	GTNNAC	3 cut(s)	367, 653, 809
HpyAV	CCTTC	5 cut(s)	193, 232, 385, 642, 871
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	3 cut(s)	92, 334, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 392, 757
HpyF3I	CTNAG	3 cut(s)	169, 396, 425
Hsp92II	CATG	6 cut(s)	136, 199, 338, 692, 710, 773
KflI	GGGWCCC	1 cut(s)	208
Kpn2I	TCCGGA	1 cut(s)	38
Kzo9I	GATC	4 cut(s)	322, 454, 612, 691
LmnI	GCTCC	2 cut(s)	481, 736
LpnPI	CCDG	4 cut(s)	28, 52, 375, 423
MaeI	CTAG	9 cut(s)	153, 204, 234, 345, 377, 405, 741, 942, 969
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	4 cut(s)	324, 456, 614, 693
MbiI	CCGCTC	1 cut(s)	610
MboI	GATC	4 cut(s)	322, 454, 612, 691
MfeI	CAATTG	2 cut(s)	936, 975
MflI	RGATCY	2 cut(s)	322, 612
MhlI	GDGCHC	2 cut(s)	434, 655
MluCI	AATT	6 cut(s)	179, 520, 845, 882, 936, 975
MlyI	GAGTC	1 cut(s)	842
Mph1103I	ATGCAT	1 cut(s)	336
MroI	TCCGGA	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	4 cut(s)	551, 576, 848, 1005
MslI	CAYNNNNRTG	2 cut(s)	333, 711
MspI	CCGG	3 cut(s)	15, 39, 362
MunI	CAATTG	2 cut(s)	936, 975
MwoI	GCNNNNNNNGC	3 cut(s)	200, 392, 757
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	4 cut(s)	322, 454, 612, 691
NheI	GCTAGC	1 cut(s)	968
NlaIII	CATG	6 cut(s)	136, 199, 338, 692, 710, 773
NlaIV	GGNNCC	5 cut(s)	209, 210, 412, 483, 738
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	628
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspN4I	GGNNCC	5 cut(s)	209, 210, 412, 483, 738
PspPI	GGNCC	5 cut(s)	129, 208, 359, 411, 620
PspPPI	RGGWCCY	1 cut(s)	208
PsuI	RGATCY	2 cut(s)	322, 612
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	2 cut(s)	333, 711
SaqAI	TTAA	4 cut(s)	551, 576, 848, 1005
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	4 cut(s)	322, 454, 612, 691
Sau96I	GGNCC	5 cut(s)	129, 208, 359, 411, 620
SchI	GAGTC	1 cut(s)	842
SduI	GDGCHC	2 cut(s)	434, 655
SinI	GGWCC	4 cut(s)	208, 359, 411, 620
SmiMI	CAYNNNNRTG	2 cut(s)	333, 711
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	6 cut(s)	179, 520, 845, 882, 936, 975
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	3 cut(s)	507, 610, 861
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	9 cut(s)	153, 204, 234, 345, 377, 405, 741, 942, 969
StuI	AGGCCT	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	415
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	6 cut(s)	179, 520, 845, 882, 936, 975
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	4 cut(s)	551, 576, 848, 1005
Tru9I	TTAA	4 cut(s)	551, 576, 848, 1005
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	212, 609
TspGWI	ACGGA	1 cut(s)	638
VneI	GTGCAC	1 cut(s)	651
VpaK11BI	GGWCC	4 cut(s)	208, 359, 411, 620
XapI	RAATTY	1 cut(s)	882
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	9 cut(s)	153, 204, 234, 345, 377, 405, 741, 942, 969
Zsp2I	ATGCAT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.