Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003882.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Forward (+)

153887 .. 155792

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003882.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atggcaacttctacatcgtgtttgctttgtgagagtctagcacattccactcaagaatgtcacttatcatccaagtttccggactttattgaagaacaagtgaaccaagtgggtggaaagaaaagctttagaggtggccaaggtcaagactcatcaaatgttgctaattatggcaatgcacaccaaggaagcactcatttttcacaatatggtcaacatggacagcaagcatatgggtctaattctcaaggccaatctacctcaagtcaaggatttcatggtcaaaacacccctcccgggtttacacaaggtgttggctatagtggtagcaagtttcaaggcaatcctatctcatttcaaggcccccaccaaggcgagaactacaattctcctcctattctccaaggcattcctattcaagctccaaatgaaccaaagaagcctaattttgaagacttgatgggagagtttctcaaggttcaaacttctactaatgcggagaccaagcaaaacatctcttcactagttcaagggtatcaaactctacaacaaggcatggctagactagaggtacaagtgggccaaatggccaccaatatgagtgagagaccaaaaggagccttaccttcacaaccggagccaaacccaagaggaaaactccatgaatgcaatgccatcaccactctacgttcgggaaaggtatatgataacgatgccatcaccactatacgttcgggaaaggtatatgataatcatgtttacatgcctacatcttctagtttccatacaaatcctttatttgatgacgatgttgatttgcattcatatggggccaagagggaagaaaataagacttctagggatgaggatgtctcggaccctaaattagatggtgagcccatgaaggctagggacccatctacggccgataacacctctaagaaggttctttatgacattagacccaccacgcatgagtttgagccatctacttctagagaaaatgaggggaggaataaggaggaagatttacatatgcatggtagctctagggataggagttgtctggtctactcatcactaggcgaggccttgagggctaagaaccctagtgggactgtgactacccttaggggcactactagaagtctcaccttcgatccacctcttgatttgaatacattggagccaccacttccttatcctaatgccgcaagaagagataattcaaagaggggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve

Protein Analysis

413

Amino Acids

45.26

Weight (kDa)

6.17

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1071
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	2 cut(s)	497, 1212
AclWI	GGATC	1 cut(s)	1154
AcoI	YGGCCR	3 cut(s)	136, 588, 924
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	3 cut(s)	297, 371, 922
AgsI	TTSAA	9 cut(s)	92, 338, 359, 419, 452, 482, 530, 1177, 1230
AhlI	ACTAGT	1 cut(s)	523
AluBI	AGCT	3 cut(s)	126, 422, 1047
AluI	AGCT	3 cut(s)	126, 422, 1047
Alw26I	GTCTC	4 cut(s)	494, 601, 877, 1154
AlwI	GGATC	1 cut(s)	1154
Ama87I	CYCGRG	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	8 cut(s)	136, 250, 361, 580, 588, 831, 924, 1089
AspS9I	GGNCC	5 cut(s)	362, 580, 831, 877, 913
AsuC2I	CCSGG	2 cut(s)	297, 298
AsuHPI	GGTGA	4 cut(s)	670, 712, 905, 1144
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	2 cut(s)	877, 913
AxyI	CCTNAGG	1 cut(s)	1130
BaeGI	GKGCMC	1 cut(s)	1139
BalI	TGGCCA	2 cut(s)	138, 590
BanII	GRGCYC	1 cut(s)	900
BbsI	GAAGAC	1 cut(s)	459
BccI	CCATC	6 cut(s)	454, 683, 725, 884, 925, 994
BceAI	ACGGC	1 cut(s)	939
BcnI	CCSGG	2 cut(s)	297, 298
BcoDI	GTCTC	4 cut(s)	494, 601, 877, 1154
BcuI	ACTAGT	1 cut(s)	523
BfmI	CTRYAG	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	1097
BisI	GCNGC	1 cut(s)	1212
BlsI	GCNGC	1 cut(s)	1213
Bme1390I	CCNGG	2 cut(s)	297, 298
Bme18I	GGWCC	2 cut(s)	877, 913
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	5 cut(s)	362, 580, 831, 877, 913
BmiI	GGNNCC	8 cut(s)	364, 619, 639, 832, 879, 914, 915, 1188
BmrFI	CCNGG	2 cut(s)	297, 298
BmsI	GCATC	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	459
BplI	GAGNNNNNCTC	6 cut(s)	456, 488, 642, 674, 857, 889
BpuEI	CTTGAG	5 cut(s)	36, 231, 247, 458, 1114
BpuMI	CCSGG	2 cut(s)	297, 298
BsaI	GGTCTC	2 cut(s)	494, 601
BsaJI	CCNNGG	5 cut(s)	139, 184, 296, 370, 403
BsaWI	WCCGGW	2 cut(s)	79, 634
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 371, 922
Bse21I	CCTNAGG	1 cut(s)	1130
Bse3DI	GCAATG	2 cut(s)	181, 676
BseAI	TCCGGA	1 cut(s)	79
BseDI	CCNNGG	5 cut(s)	139, 184, 296, 370, 403
BseGI	GGATG	3 cut(s)	68, 868, 874
BseLI	CCNNNNNNNGG	3 cut(s)	297, 371, 922
BseMI	GCAATG	2 cut(s)	181, 676
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	1139
BseX3I	CGGCCG	1 cut(s)	924
Bsh1285I	CGRYCG	1 cut(s)	927
BshFI	GGCC	8 cut(s)	138, 252, 363, 582, 590, 833, 926, 1091
BsiEI	CGRYCG	1 cut(s)	927
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	3 cut(s)	80, 297, 635
BslFI	GGGAC	2 cut(s)	926, 1129
BslI	CCNNNNNNNGG	3 cut(s)	297, 371, 922
BsmAI	GTCTC	4 cut(s)	494, 601, 877, 1154
BsmFI	GGGAC	2 cut(s)	926, 1129
BsmI	GAATGC	3 cut(s)	408, 671, 820
BsnI	GGCC	8 cut(s)	138, 252, 363, 582, 590, 833, 926, 1091
Bso31I	GGTCTC	2 cut(s)	494, 601
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	900, 1139
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	1159
BspACI	CCGC	2 cut(s)	497, 1212
BspANI	GGCC	8 cut(s)	138, 252, 363, 582, 590, 833, 926, 1091
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	8 cut(s)	364, 619, 639, 832, 879, 914, 915, 1188
BspPI	GGATC	1 cut(s)	1154
BspTNI	GGTCTC	2 cut(s)	494, 601
BsrDI	GCAATG	2 cut(s)	181, 676
BssECI	CCNNGG	5 cut(s)	139, 184, 296, 370, 403
BssMI	GATC	1 cut(s)	1159
BssT1I	CCWWGG	4 cut(s)	139, 184, 370, 403
Bst4CI	ACNGT	1 cut(s)	1120
Bst6I	CTCTTC	2 cut(s)	523, 1213
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	939, 1101, 1130
BstF5I	GGATG	3 cut(s)	68, 868, 874
BstKTI	GATC	1 cut(s)	1162
BstMAI	GTCTC	4 cut(s)	494, 601, 877, 1154
BstMBI	GATC	1 cut(s)	1159
BstMCI	CGRYCG	1 cut(s)	927
BstMWI	GCNNNNNNNGC	1 cut(s)	1097
BstNSI	RCATGY	1 cut(s)	766
BstSCI	CCNGG	2 cut(s)	295, 296
BstSFI	CTRYAG	1 cut(s)	319
BstSLI	GKGCMC	1 cut(s)	1139
BstV2I	GAAGAC	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	113
BstZI	CGGCCG	1 cut(s)	924
Bsu36I	CCTNAGG	1 cut(s)	1130
BsuRI	GGCC	8 cut(s)	138, 252, 363, 582, 590, 833, 926, 1091
BtsCI	GGATG	3 cut(s)	68, 868, 874
Cac8I	GCNNGC	1 cut(s)	228
Cfr13I	GGNCC	5 cut(s)	362, 580, 831, 877, 913
Cfr9I	CCCGGG	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	9 cut(s)	218, 278, 556, 662, 755, 763, 901, 974, 1040
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	3 cut(s)	939, 1101, 1130
DpnI	GATC	1 cut(s)	1161
DpnII	GATC	1 cut(s)	1159
DraIII	CACNNNGTG	1 cut(s)	311
EaeI	YGGCCR	3 cut(s)	136, 588, 924
EagI	CGGCCG	1 cut(s)	924
Eam1104I	CTCTTC	2 cut(s)	523, 1213
EarI	CTCTTC	2 cut(s)	523, 1213
EclXI	CGGCCG	1 cut(s)	924
Eco130I	CCWWGG	4 cut(s)	139, 184, 370, 403
Eco147I	AGGCCT	1 cut(s)	1091
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	2 cut(s)	494, 601
Eco47I	GGWCC	2 cut(s)	877, 913
Eco52I	CGGCCG	1 cut(s)	924
Eco81I	CCTNAGG	1 cut(s)	1130
Eco88I	CYCGRG	1 cut(s)	296
EcoO109I	RGGNCCY	2 cut(s)	362, 913
EcoT14I	CCWWGG	4 cut(s)	139, 184, 370, 403
EcoT22I	ATGCAT	1 cut(s)	1041
EcoT38I	GRGCYC	1 cut(s)	900
ErhI	CCWWGG	4 cut(s)	139, 184, 370, 403
FaeI	CATG	9 cut(s)	221, 281, 559, 665, 758, 766, 904, 977, 1043
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	2 cut(s)	926, 1129
FatI	CATG	9 cut(s)	217, 277, 555, 661, 754, 762, 900, 973, 1039
FauNDI	CATATG	3 cut(s)	232, 826, 1035
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	1 cut(s)	1212
FokI	GGATG	3 cut(s)	55, 875, 881
FriOI	GRGCYC	1 cut(s)	900
Fsp4HI	GCNGC	1 cut(s)	1212
GluI	GCNGC	1 cut(s)	1212
HaeIII	GGCC	8 cut(s)	138, 252, 363, 582, 590, 833, 926, 1091
HapII	CCGG	3 cut(s)	80, 297, 635
Hin1II	CATG	9 cut(s)	221, 281, 559, 665, 758, 766, 904, 977, 1043
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	2 cut(s)	34, 149
HpaII	CCGG	3 cut(s)	80, 297, 635
HphI	GGTGA	4 cut(s)	670, 712, 905, 1144
Hpy166II	GTNNAC	5 cut(s)	103, 215, 303, 760, 1072
Hpy188I	TCNGA	1 cut(s)	877
Hpy188III	TCNNGA	7 cut(s)	53, 80, 146, 693, 735, 996, 1169
Hpy8I	GTNNAC	5 cut(s)	103, 215, 303, 760, 1072
HpyAV	CCTTC	4 cut(s)	636, 898, 937, 1165
HpyCH4III	ACNGT	1 cut(s)	1120
HpyCH4IV	ACGT	2 cut(s)	688, 730
HpyCH4V	TGCA	4 cut(s)	179, 669, 820, 1039
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1097
HpyF3I	CTNAG	3 cut(s)	939, 1101, 1130
HpySE526I	ACGT	2 cut(s)	688, 730
Hsp92II	CATG	9 cut(s)	221, 281, 559, 665, 758, 766, 904, 977, 1043
KflI	GGGWCCC	1 cut(s)	913
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	1159
LmnI	GCTCC	4 cut(s)	427, 617, 637, 1186
LpnPI	CCDG	4 cut(s)	93, 310, 648, 1052
LweI	GCATC	1 cut(s)	703
MaeII	ACGT	2 cut(s)	688, 730
MaeIII	GTNAC	2 cut(s)	59, 1120
MalI	GATC	1 cut(s)	1161
MboI	GATC	1 cut(s)	1159
MboII	GAAGA	7 cut(s)	104, 464, 510, 765, 854, 1037, 1230
MhlI	GDGCHC	2 cut(s)	900, 1139
MlsI	TGGCCA	2 cut(s)	138, 590
MluCI	AATT	6 cut(s)	166, 241, 385, 445, 884, 1225
MluNI	TGGCCA	2 cut(s)	138, 590
MlyI	GAGTC	2 cut(s)	43, 143
Mox20I	TGGCCA	2 cut(s)	138, 590
Mph1103I	ATGCAT	1 cut(s)	1041
MroI	TCCGGA	1 cut(s)	79
MscI	TGGCCA	2 cut(s)	138, 590
MslI	CAYNNNNRTG	3 cut(s)	596, 825, 1038
Msp20I	TGGCCA	2 cut(s)	138, 590
MspI	CCGG	3 cut(s)	80, 297, 635
MspR9I	CCNGG	2 cut(s)	297, 298
Mva1269I	GAATGC	3 cut(s)	408, 671, 820
MwoI	GCNNNNNNNGC	1 cut(s)	1097
NciI	CCSGG	2 cut(s)	297, 298
NdeI	CATATG	3 cut(s)	232, 826, 1035
NdeII	GATC	1 cut(s)	1159
NlaIII	CATG	9 cut(s)	221, 281, 559, 665, 758, 766, 904, 977, 1043
NlaIV	GGNNCC	8 cut(s)	364, 619, 639, 832, 879, 914, 915, 1188
NmuCI	GTSAC	2 cut(s)	59, 1120
NsiI	ATGCAT	1 cut(s)	1041
NspI	RCATGY	1 cut(s)	766
PceI	AGGCCT	1 cut(s)	1091
PctI	GAATGC	3 cut(s)	408, 671, 820
PkrI	GCNGC	1 cut(s)	1213
PleI	GAGTC	2 cut(s)	42, 143
PpsI	GAGTC	2 cut(s)	42, 143
PpuMI	RGGWCCY	1 cut(s)	913
Psp5II	RGGWCCY	1 cut(s)	913
PspN4I	GGNNCC	8 cut(s)	364, 619, 639, 832, 879, 914, 915, 1188
PspPI	GGNCC	5 cut(s)	362, 580, 831, 877, 913
PspPPI	RGGWCCY	1 cut(s)	913
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
RseI	CAYNNNNRTG	3 cut(s)	596, 825, 1038
SatI	GCNGC	1 cut(s)	1212
Sau3AI	GATC	1 cut(s)	1159
Sau96I	GGNCC	5 cut(s)	362, 580, 831, 877, 913
SchI	GAGTC	2 cut(s)	43, 143
ScrFI	CCNGG	2 cut(s)	297, 298
SduI	GDGCHC	2 cut(s)	900, 1139
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	1 cut(s)	319
SinI	GGWCC	2 cut(s)	877, 913
SmaI	CCCGGG	1 cut(s)	298
SmiMI	CAYNNNNRTG	3 cut(s)	596, 825, 1038
SmlI	CTYRAG	5 cut(s)	51, 246, 262, 473, 1093
SmoI	CTYRAG	5 cut(s)	51, 246, 262, 473, 1093
SpeI	ACTAGT	1 cut(s)	523
Sse9I	AATT	6 cut(s)	166, 241, 385, 445, 884, 1225
SseBI	AGGCCT	1 cut(s)	1091
SsiI	CCGC	2 cut(s)	497, 1212
StuI	AGGCCT	1 cut(s)	1091
StyD4I	CCNGG	2 cut(s)	295, 296
StyI	CCWWGG	4 cut(s)	139, 184, 370, 403
TaaI	ACNGT	1 cut(s)	1120
TaiI	ACGT	2 cut(s)	691, 733
TaqI	TCGA	1 cut(s)	1158
TasI	AATT	6 cut(s)	166, 241, 385, 445, 884, 1225
TauI	GCSGC	1 cut(s)	1214
TseFI	GTSAC	2 cut(s)	59, 1120
Tsp45I	GTSAC	2 cut(s)	59, 1120
TspDTI	ATGAA	5 cut(s)	266, 444, 678, 813, 917
TspMI	CCCGGG	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	877, 913
XbaI	TCTAGA	1 cut(s)	995
XceI	RCATGY	1 cut(s)	766
XmaI	CCCGGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	1071
Zsp2I	ATGCAT	1 cut(s)	1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.