Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000893.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

23434 .. 24595

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000893.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggctagactagaggtacaagtgggtcaaatggccaccaacatgagtgagagaccaaaaggagccttaccttcacaaccggagccaaatccaagaggccaaatccgtgaatgcaatgccattaccactctacgtttggggaaggtatatgataatcaagtttacatgccgacatcttctagtttccatacaaattctttatttgatgatgatgttgatttgcattcatgtggagtcaagagggaaaaaaatgtacctcttggccatgttgttgatgataatttgcatttgcatcatgttctttatattacaaagaggatgggaccggaagggaagaaaatgtacctttcgaatgatgcaagcaaatatggtttgattaatagtggcaaggaaatgaccacgttgagaaagaacacttctagggatgaggatgtctcggaccctaaattagatgagccatctacttctaccgaaaaagaggggagaaataaggaggaagacctacatgtgcatcatagctctaaggataggagtggcccggtctactcatcactaggcaaggccttgagggctaagaaccgtagtgggaccgtgactacccctagggacaccatcgggagtctcacctttgatccacctcttgatttgaatgcactggaaccaccacttccttacgttaatgctgcaagaaaagataattcaaagaggggtaagaagaagagtggcttgatgagagagatgcatgaaatattcaagaaagtggatgtcaatattccattggtggacctcattcatcaagtgccggtatgtgctcaatttctcaagagcttatgcatgaacaaaaagaaattcaaagccgatgagacatttgagttgaaggaggaagtgcacttatccaacgaagactaccaccaaagatgcaagatccggacagctttacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 ko05010 map03410 map04210 map04212 map04214 map04217 map05010

Pfam Domains

Protein Families

Exo_endo_phos_2 RVT_1 RVT_3 zf-RVT

Protein Analysis

314

Amino Acids

35.46

Weight (kDa)

8.9

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	543
AccIII	TCCGGA	1 cut(s)	927
AclWI	GGATC	2 cut(s)	626, 919
AcoI	YGGCCR	2 cut(s)	33, 262
AcsI	RAATTY	2 cut(s)	193, 848
AfaI	GTAC	3 cut(s)	18, 255, 344
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	5 cut(s)	649, 702, 754, 853, 877
AluBI	AGCT	3 cut(s)	519, 828, 935
AluI	AGCT	3 cut(s)	519, 828, 935
Alw21I	GWGCWC	2 cut(s)	814, 891
Alw26I	GTCTC	4 cut(s)	46, 439, 626, 857
Alw44I	GTGCAC	1 cut(s)	887
AlwI	GGATC	2 cut(s)	626, 919
Aor13HI	TCCGGA	1 cut(s)	927
AoxI	GGCC	5 cut(s)	33, 97, 262, 535, 561
ApaLI	GTGCAC	1 cut(s)	887
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	2 cut(s)	193, 848
AseI	ATTAAT	1 cut(s)	378
AspA2I	CCTAGG	1 cut(s)	602
AspS9I	GGNCC	5 cut(s)	323, 439, 536, 588, 784
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	616
AsuII	TTCGAA	1 cut(s)	350
AvaII	GGWCC	4 cut(s)	323, 439, 588, 784
AvrII	CCTAGG	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	891
BalI	TGGCCA	2 cut(s)	35, 264
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BbsI	GAAGAC	2 cut(s)	504, 909
Bbv12I	GWGCWC	2 cut(s)	814, 891
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	3 cut(s)	313, 466, 620
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	4 cut(s)	46, 439, 626, 857
BfaI	CTAG	6 cut(s)	6, 11, 180, 420, 554, 603
BglI	GCCNNNNNGGC	1 cut(s)	569
BisI	GCNGC	1 cut(s)	684
BlnI	CCTAGG	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	4 cut(s)	323, 439, 588, 784
BmgT120I	GGNCC	5 cut(s)	323, 439, 536, 588, 784
BmiI	GGNNCC	6 cut(s)	64, 84, 324, 441, 589, 660
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	5 cut(s)	301, 346, 520, 729, 908
BpiI	GAAGAC	2 cut(s)	504, 909
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
Bpu14I	TTCGAA	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	586, 806
BpuMI	CCSGG	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	602
BsaWI	WCCGGW	3 cut(s)	79, 325, 927
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	121
BseAI	TCCGGA	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	4 cut(s)	324, 430, 436, 769
BseMI	GCAATG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	660
BseSI	GKGCMC	1 cut(s)	891
BseXI	GCAGC	1 cut(s)	670
BshFI	GGCC	5 cut(s)	35, 99, 264, 537, 563
BsiHKAI	GWGCWC	2 cut(s)	814, 891
BsiSI	CCGG	5 cut(s)	80, 326, 539, 803, 928
BslFI	GGGAC	3 cut(s)	336, 601, 620
BsmAI	GTCTC	4 cut(s)	46, 439, 626, 857
BsmFI	GGGAC	3 cut(s)	336, 601, 620
BsmI	GAATGC	3 cut(s)	116, 223, 655
BsnI	GGCC	5 cut(s)	35, 99, 264, 537, 563
Bso31I	GGTCTC	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	814, 891
Bsp13I	TCCGGA	1 cut(s)	927
Bsp143I	GATC	2 cut(s)	631, 924
BspANI	GGCC	5 cut(s)	35, 99, 264, 537, 563
BspEI	TCCGGA	1 cut(s)	927
BspLI	GGNNCC	6 cut(s)	64, 84, 324, 441, 589, 660
BspPI	GGATC	2 cut(s)	626, 919
BspT104I	TTCGAA	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	660
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	2 cut(s)	631, 924
BssT1I	CCWWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	581, 592
Bst6I	CTCTTC	1 cut(s)	713
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	522, 573
BstF5I	GGATG	4 cut(s)	324, 430, 436, 769
BstKTI	GATC	2 cut(s)	634, 927
BstMAI	GTCTC	4 cut(s)	46, 439, 626, 857
BstMBI	GATC	2 cut(s)	631, 924
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstNSI	RCATGY	2 cut(s)	169, 509
BstSCI	CCNGG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	891
BstV1I	GCAGC	1 cut(s)	670
BstV2I	GAAGAC	2 cut(s)	504, 909
BstX2I	RGATCY	1 cut(s)	924
BstYI	RGATCY	1 cut(s)	924
BsuRI	GGCC	5 cut(s)	35, 99, 264, 537, 563
BtsCI	GGATG	4 cut(s)	324, 430, 436, 769
BtsIMutI	CAGTG	1 cut(s)	653
Cac8I	GCNNGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	802
Cfr13I	GGNCC	5 cut(s)	323, 439, 536, 588, 784
Csp6I	GTAC	3 cut(s)	17, 254, 343
CviAII	CATG	8 cut(s)	43, 166, 228, 266, 296, 506, 743, 835
CviQI	GTAC	3 cut(s)	17, 254, 343
DdeI	CTNAG	2 cut(s)	522, 573
DpnI	GATC	2 cut(s)	633, 926
DpnII	GATC	2 cut(s)	631, 924
EaeI	YGGCCR	2 cut(s)	33, 262
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
Eco130I	CCWWGG	1 cut(s)	602
Eco147I	AGGCCT	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	4 cut(s)	323, 439, 588, 784
EcoT14I	CCWWGG	1 cut(s)	602
EcoT22I	ATGCAT	2 cut(s)	744, 836
ErhI	CCWWGG	1 cut(s)	602
FaeI	CATG	8 cut(s)	46, 169, 231, 269, 299, 509, 746, 838
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	3 cut(s)	336, 601, 620
FatI	CATG	8 cut(s)	42, 165, 227, 265, 295, 505, 742, 834
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	4 cut(s)	331, 437, 443, 776
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	6 cut(s)	6, 11, 180, 420, 554, 603
GluI	GCNGC	1 cut(s)	684
HaeIII	GGCC	5 cut(s)	35, 99, 264, 537, 563
HapII	CCGG	5 cut(s)	80, 326, 539, 803, 928
Hin1II	CATG	8 cut(s)	46, 169, 231, 269, 299, 509, 746, 838
HinfI	GANTC	2 cut(s)	234, 619
HpaII	CCGG	5 cut(s)	80, 326, 539, 803, 928
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	4 cut(s)	163, 544, 784, 889
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	6 cut(s)	238, 616, 641, 754, 823, 928
Hpy8I	GTNNAC	4 cut(s)	163, 544, 784, 889
HpyAV	CCTTC	4 cut(s)	81, 136, 323, 871
HpyCH4III	ACNGT	2 cut(s)	581, 592
HpyCH4IV	ACGT	3 cut(s)	133, 401, 675
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	2 cut(s)	522, 573
HpySE526I	ACGT	3 cut(s)	133, 401, 675
Hsp92II	CATG	8 cut(s)	46, 169, 231, 269, 299, 509, 746, 838
Kpn2I	TCCGGA	1 cut(s)	927
Kzo9I	GATC	2 cut(s)	631, 924
LmnI	GCTCC	2 cut(s)	62, 82
LpnPI	CCDG	6 cut(s)	93, 339, 552, 641, 816, 941
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	5 cut(s)	301, 346, 520, 729, 908
MaeI	CTAG	6 cut(s)	6, 11, 180, 420, 554, 603
MaeII	ACGT	3 cut(s)	133, 401, 675
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	2 cut(s)	633, 926
MboI	GATC	2 cut(s)	631, 924
MboII	GAAGA	6 cut(s)	168, 346, 509, 727, 730, 914
MflI	RGATCY	1 cut(s)	924
MhlI	GDGCHC	2 cut(s)	814, 891
MlsI	TGGCCA	2 cut(s)	35, 264
MluCI	AATT	6 cut(s)	193, 280, 446, 697, 815, 848
MluNI	TGGCCA	2 cut(s)	35, 264
MlyI	GAGTC	2 cut(s)	243, 628
MmeI	TCCRAC	1 cut(s)	921
Mox20I	TGGCCA	2 cut(s)	35, 264
Mph1103I	ATGCAT	2 cut(s)	744, 836
MroI	TCCGGA	1 cut(s)	927
MscI	TGGCCA	2 cut(s)	35, 264
MseI	TTAA	2 cut(s)	378, 678
MslI	CAYNNNNRTG	2 cut(s)	41, 228
Msp20I	TGGCCA	2 cut(s)	35, 264
MspI	CCGG	5 cut(s)	80, 326, 539, 803, 928
MspR9I	CCNGG	1 cut(s)	539
Mva1269I	GAATGC	3 cut(s)	116, 223, 655
MwoI	GCNNNNNNNGC	1 cut(s)	569
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	2 cut(s)	631, 924
NlaIII	CATG	8 cut(s)	46, 169, 231, 269, 299, 509, 746, 838
NlaIV	GGNNCC	6 cut(s)	64, 84, 324, 441, 589, 660
NmuCI	GTSAC	1 cut(s)	592
NsiI	ATGCAT	2 cut(s)	744, 836
NspI	RCATGY	2 cut(s)	169, 509
NspV	TTCGAA	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	563
PciI	ACATGT	1 cut(s)	505
PctI	GAATGC	3 cut(s)	116, 223, 655
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	2 cut(s)	242, 627
PpsI	GAGTC	2 cut(s)	242, 627
PscI	ACATGT	1 cut(s)	505
PshBI	ATTAAT	1 cut(s)	378
PspN4I	GGNNCC	6 cut(s)	64, 84, 324, 441, 589, 660
PspPI	GGNCC	5 cut(s)	323, 439, 536, 588, 784
PsuI	RGATCY	1 cut(s)	924
RsaI	GTAC	3 cut(s)	18, 255, 344
RsaNI	GTAC	3 cut(s)	17, 254, 343
RseI	CAYNNNNRTG	2 cut(s)	41, 228
SaqAI	TTAA	2 cut(s)	378, 678
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	2 cut(s)	631, 924
Sau96I	GGNCC	5 cut(s)	323, 439, 536, 588, 784
SchI	GAGTC	2 cut(s)	243, 628
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	814, 891
SfaNI	GCATC	5 cut(s)	301, 346, 520, 729, 908
SfuI	TTCGAA	1 cut(s)	350
SinI	GGWCC	4 cut(s)	323, 439, 588, 784
SmiMI	CAYNNNNRTG	2 cut(s)	41, 228
SmlI	CTYRAG	2 cut(s)	565, 821
SmoI	CTYRAG	2 cut(s)	565, 821
Sse9I	AATT	6 cut(s)	193, 280, 446, 697, 815, 848
SseBI	AGGCCT	1 cut(s)	563
SspI	AATATT	2 cut(s)	750, 772
SspMI	CTAG	6 cut(s)	6, 11, 180, 420, 554, 603
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	581, 592
TaiI	ACGT	3 cut(s)	136, 404, 678
TaqI	TCGA	1 cut(s)	350
TasI	AATT	6 cut(s)	193, 280, 446, 697, 815, 848
Tru1I	TTAA	2 cut(s)	378, 678
Tru9I	TTAA	2 cut(s)	378, 678
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	4 cut(s)	216, 759, 782, 851
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	660
VneI	GTGCAC	1 cut(s)	887
VpaK11BI	GGWCC	4 cut(s)	323, 439, 588, 784
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	193, 848
XceI	RCATGY	2 cut(s)	169, 509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XmaJI	CCTAGG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	6 cut(s)	6, 11, 180, 420, 554, 603
Zsp2I	ATGCAT	2 cut(s)	744, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.