RchiOBHm_Chr3g0452831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001407
Physical Location & Seq
Reverse (-)
3389842 .. 3390576
735 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41996

Sequence Viewer

Length: 498 bp
ATGATTGTCACTTGGCTTCACAATTTCCGGAATTTGTTGAGGAGCAAGTTAGAGCTATTAATTCTTATCAAAGACCACCAAGAAATGATCCTTATTCTACTACATATAATCCGGGTTGGCGTAACCACCCAAATTTCTCATGGAGAGATGGTGGAGGGTCCTCTAATGCACACCAAGGTGGTTCTCATTCATATGGAGGGAATCAAGGCCTTAATTCTTCATCTTTTGGTCCTCACGGTCATGGAAACACACAATTTGGTGGACAAAATCATTATGGGCAGCAAGCATCTAGTTACAATTCTCAAGGCCAGGGGCCATCTTTTGGTGCTACACATGCTTATGGAGGAGCCCCACATGATACTCAAGGGTTTGGTCAAAGTTCTCATTCATTTGGTGGTGCCAATCCTACACAAAATGCTCCTCCCGGATTTCAAAATAGGCAAGCACCACAACCGGACCCAAAGAAGTCTCATATGGATGATGTATTGGCCGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

19.22

Weight (kDa)

9.93

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 322
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 1 cut(s) 491
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 2 cut(s) 31, 132
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 433
AjnI CCWGG 1 cut(s) 308
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 1 cut(s) 82
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 4 cut(s) 207, 306, 313, 488
ApeKI GCWGC 1 cut(s) 279
ApoI RAATTY 2 cut(s) 31, 132
AseI ATTAAT 1 cut(s) 59
AspS9I GGNCC 4 cut(s) 158, 229, 313, 456
AsuC2I CCSGG 2 cut(s) 113, 425
AvaII GGWCC 3 cut(s) 158, 229, 456
BanI GGYRCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 291
BccI CCATC 2 cut(s) 142, 324
BciT130I CCWGG 1 cut(s) 310
BcnI CCSGG 2 cut(s) 113, 425
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 2 cut(s) 290, 496
BisI GCNGC 2 cut(s) 280, 491
BlsI GCNGC 2 cut(s) 281, 492
Bme1390I CCNGG 3 cut(s) 113, 310, 425
Bme18I GGWCC 3 cut(s) 158, 229, 456
BmgT120I GGNCC 4 cut(s) 158, 229, 313, 456
BmiI GGNNCC 5 cut(s) 159, 314, 348, 399, 458
BmrFI CCNGG 3 cut(s) 113, 310, 425
BmsI GCATC 1 cut(s) 295
BpuEI CTTGAG 2 cut(s) 287, 347
BpuMI CCSGG 2 cut(s) 113, 425
BsaJI CCNNGG 2 cut(s) 174, 309
BsaWI WCCGGW 2 cut(s) 27, 453
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 322
BseAI TCCGGA 1 cut(s) 27
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 174, 309
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 322
BseRI GAGGAG 3 cut(s) 55, 359, 410
BseXI GCAGC 1 cut(s) 291
BshFI GGCC 4 cut(s) 209, 308, 315, 490
BshNI GGYRCC 1 cut(s) 397
BsiSI CCGG 4 cut(s) 28, 112, 425, 454
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 473
BsnI GGCC 4 cut(s) 209, 308, 315, 490
Bsp1286I GDGCHC 1 cut(s) 351
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 491
BspANI GGCC 4 cut(s) 209, 308, 315, 490
BspEI TCCGGA 1 cut(s) 27
BspLI GGNNCC 5 cut(s) 159, 314, 348, 399, 458
BspPI GGATC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 397
BssECI CCNNGG 2 cut(s) 174, 309
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 284, 443
BstF5I GGATG 1 cut(s) 483
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 3 cut(s) 111, 308, 423
BstV1I GCAGC 1 cut(s) 291
BsuRI GGCC 4 cut(s) 209, 308, 315, 490
BtsCI GGATG 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 284, 443
Cfr13I GGNCC 4 cut(s) 158, 229, 313, 456
CviAII CATG 4 cut(s) 140, 241, 334, 355
CviJI RGCY 7 cut(s) 16, 55, 209, 308, 315, 349, 490
CviKI_1 RGCY 7 cut(s) 16, 55, 209, 308, 315, 349, 490
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 3 cut(s) 158, 229, 456
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 4 cut(s) 143, 244, 337, 358
FatI CATG 4 cut(s) 139, 240, 333, 354
FauNDI CATATG 2 cut(s) 192, 473
Fnu4HI GCNGC 2 cut(s) 280, 491
FokI GGATG 1 cut(s) 490
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 2 cut(s) 280, 491
FspBI CTAG 2 cut(s) 290, 496
GluI GCNGC 2 cut(s) 280, 491
HaeIII GGCC 4 cut(s) 209, 308, 315, 490
HapII CCGG 4 cut(s) 28, 112, 425, 454
Hin1II CATG 4 cut(s) 143, 244, 337, 358
HinfI GANTC 1 cut(s) 201
HpaII CCGG 4 cut(s) 28, 112, 425, 454
Hpy166II GTNNAC 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
Hsp92II CATG 4 cut(s) 143, 244, 337, 358
Kpn2I TCCGGA 1 cut(s) 27
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 42, 346, 423
LpnPI CCDG 6 cut(s) 41, 125, 295, 322, 438, 467
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 290, 496
MaeIII GTNAC 3 cut(s) 7, 121, 292
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 7 cut(s) 22, 31, 60, 132, 213, 253, 297
MnlI CCTC 7 cut(s) 33, 148, 171, 190, 242, 337, 431
MroI TCCGGA 1 cut(s) 27
MseI TTAA 2 cut(s) 59, 212
MslI CAYNNNNRTG 5 cut(s) 176, 191, 239, 338, 476
MspI CCGG 4 cut(s) 28, 112, 425, 454
MspR9I CCNGG 3 cut(s) 113, 310, 425
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 334
NciI CCSGG 2 cut(s) 113, 425
NdeI CATATG 2 cut(s) 192, 473
NdeII GATC 1 cut(s) 87
NlaIII CATG 4 cut(s) 143, 244, 337, 358
NlaIV GGNNCC 5 cut(s) 159, 314, 348, 399, 458
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 337
OliI CACNNNNGTG 1 cut(s) 176
PceI AGGCCT 1 cut(s) 209
PfeI GAWTC 1 cut(s) 201
PflMI CCANNNNNTGG 1 cut(s) 322
PfoI TCCNGGA 1 cut(s) 423
PkrI GCNGC 2 cut(s) 281, 492
PpuMI RGGWCCY 1 cut(s) 158
PshBI ATTAAT 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 5 cut(s) 159, 314, 348, 399, 458
PspPI GGNCC 4 cut(s) 158, 229, 313, 456
PspPPI RGGWCCY 1 cut(s) 158
RseI CAYNNNNRTG 5 cut(s) 176, 191, 239, 338, 476
SaqAI TTAA 2 cut(s) 59, 212
SatI GCNGC 2 cut(s) 280, 491
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 4 cut(s) 158, 229, 313, 456
ScrFI CCNGG 3 cut(s) 113, 310, 425
SduI GDGCHC 1 cut(s) 351
SetI ASST 2 cut(s) 57, 180
SfaNI GCATC 1 cut(s) 295
SinI GGWCC 3 cut(s) 158, 229, 456
SmiMI CAYNNNNRTG 5 cut(s) 176, 191, 239, 338, 476
SmlI CTYRAG 2 cut(s) 302, 362
SmoI CTYRAG 2 cut(s) 302, 362
Sse9I AATT 7 cut(s) 22, 31, 60, 132, 213, 253, 297
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 1 cut(s) 491
SspMI CTAG 2 cut(s) 290, 496
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 3 cut(s) 111, 308, 423
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 238
TasI AATT 7 cut(s) 22, 31, 60, 132, 213, 253, 297
TauI GCSGC 1 cut(s) 493
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 2 cut(s) 59, 212
Tru9I TTAA 2 cut(s) 59, 212
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 279
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 3 cut(s) 179, 209, 377
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 3 cut(s) 158, 229, 456
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 2 cut(s) 31, 132
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XspI CTAG 2 cut(s) 290, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.