Rmu_co8492139.1_g000002

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8492139.1
OG0001407
Physical Location & Seq
Reverse (-)
987 .. 2570
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8492139.1_g000002.1.cds

Sequence Viewer

Length: 639 bp
acttcaagattgagttctagggataagggatgtttcggctctactaagcaaggtgaggccgtgaaggctacggatcctaacttggccaaaaacacctataaggatcactttattagtcagactacatttttggatttgagttctaatggtacaccgcctatttcatcatctagtgagcatcgggtacatcaaggggggagtcataaggaggaagactattctcatatatctttggattctagggatacgagtggaccgatccattctacactaggccaggccttgaggcctaataggatggttaccacccttagggtttcaaaggggagtctcacttcttctccacctcttgatttgactccatcaaagcctagacttccctatcctcaagttaaaagagcccaagatcaaaagaagaggaaggagatacaaaaacaagagttcattgagctattcaagtccgttaacatcaatatcccattacttaatgtcatcaagcaagttccgacctatgcgaagtgcttgaaggacatgtgcactaataagaagaagtttgtggagaatgagattgcgtacttcagtgagcttgtgttggtcgtacttcaaaggaggttgcctcctaagcttagtgccccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

212

Amino Acids

23.73

Weight (kDa)

9.75

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 155
AclWI GGATC 4 cut(s) 68, 81, 111, 253
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 562
AfaI GTAC 4 cut(s) 151, 186, 575, 600
AfiI CCNNNNNNNGG 1 cut(s) 312
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 5 cut(s) 6, 321, 457, 526, 605
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 3 cut(s) 451, 586, 625
AluI AGCT 3 cut(s) 451, 586, 625
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 335
Alw44I GTGCAC 1 cut(s) 535
AlwI GGATC 4 cut(s) 68, 81, 111, 253
AoxI GGCC 5 cut(s) 57, 84, 274, 279, 287
ApaLI GTGCAC 1 cut(s) 535
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 254
AxyI CCTNAGG 1 cut(s) 311
BaeGI GKGCMC 2 cut(s) 539, 634
BalI TGGCCA 1 cut(s) 86
BamHI GGATCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 539
BccI CCATC 2 cut(s) 292, 370
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 5 cut(s) 18, 171, 240, 272, 372
BfuI GTATCC 1 cut(s) 238
BglI GCCNNNNNGGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 601, 633
Bpu10I CCTNAGC 1 cut(s) 621
BpuEI CTTGAG 2 cut(s) 304, 372
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse21I CCTNAGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 35, 303
BseLI CCNNNNNNNGG 1 cut(s) 312
BseSI GKGCMC 2 cut(s) 539, 634
BshFI GGCC 5 cut(s) 59, 86, 276, 281, 289
BsiHKAI GWGCWC 1 cut(s) 539
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 335
BsnI GGCC 5 cut(s) 59, 86, 276, 281, 289
Bsp1286I GDGCHC 3 cut(s) 403, 539, 634
Bsp143I GATC 4 cut(s) 73, 103, 258, 406
BspACI CCGC 1 cut(s) 155
BspANI GGCC 5 cut(s) 59, 86, 276, 281, 289
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 4 cut(s) 68, 81, 111, 253
BssMI GATC 4 cut(s) 73, 103, 258, 406
Bst2UI CCWGG 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 410
BstDEI CTNAG 4 cut(s) 45, 311, 621, 626
BstEII GGTNACC 1 cut(s) 301
BstF5I GGATG 2 cut(s) 35, 303
BstKTI GATC 4 cut(s) 76, 106, 261, 409
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 73, 103, 258, 406
BstMWI GCNNNNNNNGC 2 cut(s) 65, 622
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 535
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 276
BstSLI GKGCMC 2 cut(s) 539, 634
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
Bsu36I CCTNAGG 1 cut(s) 311
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 5 cut(s) 59, 86, 276, 281, 289
BtsCI GGATG 2 cut(s) 35, 303
BtsIMutI CAGTG 1 cut(s) 586
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 4 cut(s) 150, 185, 574, 599
CviAII CATG 1 cut(s) 532
CviQI GTAC 4 cut(s) 150, 185, 574, 599
DdeI CTNAG 4 cut(s) 45, 311, 621, 626
DpnI GATC 4 cut(s) 75, 105, 260, 408
DpnII GATC 4 cut(s) 73, 103, 258, 406
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco147I AGGCCT 2 cut(s) 281, 289
Eco24I GRGCYC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 562
Eco81I CCTNAGG 1 cut(s) 311
Eco91I GGTNACC 1 cut(s) 301
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 1 cut(s) 535
FaiI YATR 6 cut(s) 99, 204, 225, 227, 513, 533
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 1 cut(s) 531
FokI GGATG 2 cut(s) 42, 310
FriOI GRGCYC 1 cut(s) 403
FspBI CTAG 5 cut(s) 18, 171, 240, 272, 372
HaeIII GGCC 5 cut(s) 59, 86, 276, 281, 289
Hin1II CATG 1 cut(s) 535
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 4 cut(s) 199, 236, 328, 358
HpaI GTTAAC 1 cut(s) 466
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 4 cut(s) 152, 254, 466, 537
Hpy188I TCNGA 2 cut(s) 120, 507
Hpy188III TCNNGA 2 cut(s) 6, 350
Hpy8I GTNNAC 4 cut(s) 152, 254, 466, 537
HpyAV CCTTC 3 cut(s) 58, 415, 520
HpyCH4V TGCA 1 cut(s) 537
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 622
HpyF3I CTNAG 4 cut(s) 45, 311, 621, 626
Hsp92II CATG 1 cut(s) 535
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 4 cut(s) 73, 103, 258, 406
LpnPI CCDG 2 cut(s) 263, 290
LweI GCATC 1 cut(s) 187
MaeI CTAG 5 cut(s) 18, 171, 240, 272, 372
MaeIII GTNAC 1 cut(s) 301
MalI GATC 4 cut(s) 75, 105, 260, 408
MboI GATC 4 cut(s) 73, 103, 258, 406
MboII GAAGA 4 cut(s) 224, 330, 427, 559
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 3 cut(s) 403, 539, 634
MlsI TGGCCA 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 3 cut(s) 208, 337, 352
MmeI TCCRAC 1 cut(s) 530
MnlI CCTC 8 cut(s) 49, 202, 279, 357, 396, 411, 603, 627
Mox20I TGGCCA 1 cut(s) 86
MscI TGGCCA 1 cut(s) 86
MseI TTAA 3 cut(s) 393, 465, 486
Msp20I TGGCCA 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 65, 622
NdeII GATC 4 cut(s) 73, 103, 258, 406
NlaIII CATG 1 cut(s) 535
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 1 cut(s) 535
PceI AGGCCT 2 cut(s) 281, 289
PciI ACATGT 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PfeI GAWTC 1 cut(s) 236
PleI GAGTC 3 cut(s) 207, 336, 352
PpsI GAGTC 3 cut(s) 207, 336, 352
PscI ACATGT 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 276
PspEI GGTNACC 1 cut(s) 301
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 4 cut(s) 151, 186, 575, 600
RsaNI GTAC 4 cut(s) 150, 185, 574, 599
SaqAI TTAA 3 cut(s) 393, 465, 486
Sau3AI GATC 4 cut(s) 73, 103, 258, 406
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 3 cut(s) 208, 337, 352
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 3 cut(s) 403, 539, 634
SetI ASST 8 cut(s) 55, 98, 349, 453, 512, 588, 614, 627
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 283, 387
SmoI CTYRAG 2 cut(s) 283, 387
SseBI AGGCCT 2 cut(s) 281, 289
SsiI CCGC 1 cut(s) 155
SspMI CTAG 5 cut(s) 18, 171, 240, 272, 372
StuI AGGCCT 2 cut(s) 281, 289
StyD4I CCNGG 1 cut(s) 276
TaqII GACCGA 1 cut(s) 271
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 393, 465, 486
Tru9I TTAA 3 cut(s) 393, 465, 486
TscAI CASTG 1 cut(s) 586
TspDTI ATGAA 2 cut(s) 153, 433
TspGWI ACGGA 2 cut(s) 86, 451
TspRI CASTG 1 cut(s) 586
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 254
XceI RCATGY 1 cut(s) 535
XspI CTAG 5 cut(s) 18, 171, 240, 272, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.