RchiOBHm_Chr3g0452821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001407
Physical Location & Seq
Reverse (-)
3388719 .. 3389359
641 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41995

Sequence Viewer

Length: 222 bp
ATGTACTTCCCGGAGGTGCACAAGGAAGGAAGACCTCTTTATCTCATTCTACATCTTCAAAGTCTCAAGCTTCTAATTCTTCATCCGCACCACCTAAGCATGTGCATTTTGGCCCCACTACTCATTTATCATCACCTAGGGATCTTCATCAAGGGGGAAGGAATAAGGCGGAAGCTACTTCATCTACTTCTATTGATACACATGGTTCATCCTCGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.63

Weight (kDa)

9.9

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 86, 169
AclWI GGATC 1 cut(s) 149
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 59
AluBI AGCT 2 cut(s) 70, 175
AluI AGCT 2 cut(s) 70, 175
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 68
Alw44I GTGCAC 1 cut(s) 17
AlwI GGATC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 111
ApaLI GTGCAC 1 cut(s) 17
AspA2I CCTAGG 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 213
AvrII CCTAGG 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 21
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 137
BlnI CCTAGG 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 136, 212
Bse8I GATNNNNATC 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 136, 212
BseGI GGATG 2 cut(s) 82, 208
BseJI GATNNNNATC 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 21
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 68
BsnI GGCC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 2 cut(s) 86, 169
BspANI GGCC 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 1 cut(s) 149
BssECI CCNNGG 2 cut(s) 136, 212
BssMI GATC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 2 cut(s) 82, 208
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 2 cut(s) 82, 208
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 100, 202
CviJI RGCY 3 cut(s) 70, 113, 175
CviKI_1 RGCY 3 cut(s) 70, 113, 175
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 103, 205
FaiI YATR 2 cut(s) 101, 203
FatI CATG 2 cut(s) 99, 201
FokI GGATG 2 cut(s) 69, 195
FspBI CTAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 11
Hin1II CATG 2 cut(s) 103, 205
HindIII AAGCTT 1 cut(s) 68
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 20, 152
HpyCH4V TGCA 2 cut(s) 19, 105
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 2 cut(s) 103, 205
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 1 cut(s) 24
MaeI CTAG 1 cut(s) 137
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 4 cut(s) 42, 47, 71, 136
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 75
MnlI CCTC 3 cut(s) 7, 45, 222
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 11
NciI CCSGG 1 cut(s) 11
NdeII GATC 1 cut(s) 141
NlaIII CATG 2 cut(s) 103, 205
NlaIV GGNNCC 1 cut(s) 114
NspI RCATGY 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 141
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 21
SetI ASST 6 cut(s) 18, 37, 72, 96, 138, 177
SgeI CNNG 8 cut(s) 22, 23, 34, 79, 112, 149, 163, 214
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 75
SsiI CCGC 2 cut(s) 86, 169
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 136
TasI AATT 1 cut(s) 75
TatI WGTACW 1 cut(s) 3
TspDTI ATGAA 4 cut(s) 71, 136, 170, 197
VneI GTGCAC 1 cut(s) 17
XceI RCATGY 1 cut(s) 103
XmaJI CCTAGG 1 cut(s) 136
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.