Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8061076.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 568

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8061076.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

gtgatgtgactttgaatgccaaaggaagaaataagggggtggataaggtagccggaggggaagaaaatgtaccctccggaggagctcttcttggtaaaggttatggtttcttgtccttcaagaataatgcaagcaaatatgagttgattgatagtggcaaggaaagagctttgttgagaaagaagacttctagggatgaggatgtctcggatcctaaattagatggtgaggccatgaaggctagggacccatctaaggccgatgacatctctaggaaggttcttgatgatattagacccaccactcatgagtttaagtcatctagttctagtgacaaagaaaggaggaataaggaggaagatttacatatgcttggtagctctagggataggagttgcctggtctactcatcactaggcgaggccttgagggctaagaaccctaatgggaccatgactacccttaggggcaccaccggaagtctcacctttgatccaccttttgatttgaatacatcagagccaccacttccttatcctaatgccgcaaaaagagataattcaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.52

Weight (kDa)

8.88

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	76
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	3 cut(s)	205, 218, 487
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	79, 255
AgsI	TTSAA	4 cut(s)	15, 120, 510, 563
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	3 cut(s)	85, 169, 380
AluI	AGCT	3 cut(s)	85, 169, 380
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	210, 487
AlwI	GGATC	3 cut(s)	205, 218, 487
Aor13HI	TCCGGA	1 cut(s)	76
AoxI	GGCC	3 cut(s)	230, 257, 422
AspS9I	GGNCC	2 cut(s)	246, 449
AsuHPI	GGTGA	2 cut(s)	238, 477
AvaII	GGWCC	2 cut(s)	246, 449
AxyI	CCTNAGG	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	472
BamHI	GGATCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	2 cut(s)	217, 258
BciT130I	CCWGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	210, 487
BfaI	CTAG	7 cut(s)	191, 242, 272, 323, 329, 383, 415
BglI	GCCNNNNNGGC	2 cut(s)	238, 430
BisI	GCNGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	546
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	2 cut(s)	246, 449
BmgT120I	GGNCC	2 cut(s)	246, 449
BmiI	GGNNCC	5 cut(s)	212, 247, 248, 450, 471
BmrFI	CCNGG	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpuEI	CTTGAG	1 cut(s)	447
BsaWI	WCCGGW	2 cut(s)	76, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 255
Bse21I	CCTNAGG	1 cut(s)	463
BseAI	TCCGGA	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	201, 207
BseLI	CCNNNNNNNGG	2 cut(s)	79, 255
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	472
BshFI	GGCC	3 cut(s)	232, 259, 424
BshNI	GGYRCC	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	3 cut(s)	53, 77, 476
BslFI	GGGAC	2 cut(s)	259, 462
BslI	CCNNNNNNNGG	2 cut(s)	79, 255
BsmAI	GTCTC	2 cut(s)	210, 487
BsmFI	GGGAC	2 cut(s)	259, 462
BsmI	GAATGC	1 cut(s)	21
BsnI	GGCC	3 cut(s)	232, 259, 424
Bsp1286I	GDGCHC	2 cut(s)	87, 472
Bsp13I	TCCGGA	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	210, 492
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	3 cut(s)	232, 259, 424
BspEI	TCCGGA	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	5 cut(s)	212, 247, 248, 450, 471
BspPI	GGATC	3 cut(s)	205, 218, 487
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	469
BssMI	GATC	2 cut(s)	210, 492
Bst2UI	CCWGG	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	254, 434, 463
BstF5I	GGATG	2 cut(s)	201, 207
BstKTI	GATC	2 cut(s)	213, 495
BstMAI	GTCTC	2 cut(s)	210, 487
BstMBI	GATC	2 cut(s)	210, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 430
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstSLI	GKGCMC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	232, 259, 424
BtsCI	GGATG	2 cut(s)	201, 207
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	246, 449
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	3 cut(s)	234, 307, 453
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	3 cut(s)	254, 434, 463
DpnI	GATC	2 cut(s)	212, 494
DpnII	GATC	2 cut(s)	210, 492
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	246, 449
Eco53kI	GAGCTC	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	3 cut(s)	237, 310, 456
FaiI	YATR	7 cut(s)	104, 140, 235, 308, 368, 370, 454
FaqI	GGGAC	2 cut(s)	259, 462
FatI	CATG	3 cut(s)	233, 306, 452
FauNDI	CATATG	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	545
FokI	GGATG	2 cut(s)	208, 214
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	545
FspBI	CTAG	7 cut(s)	191, 242, 272, 323, 329, 383, 415
GluI	GCNGC	1 cut(s)	545
HaeIII	GGCC	3 cut(s)	232, 259, 424
HapII	CCGG	3 cut(s)	53, 77, 476
Hin1II	CATG	3 cut(s)	237, 310, 456
HpaII	CCGG	3 cut(s)	53, 77, 476
HphI	GGTGA	2 cut(s)	238, 477
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	2 cut(s)	210, 519
Hpy188III	TCNNGA	4 cut(s)	77, 120, 283, 307
Hpy8I	GTNNAC	1 cut(s)	405
HpyAV	CCTTC	3 cut(s)	126, 231, 270
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 430
HpyF3I	CTNAG	3 cut(s)	254, 434, 463
Hsp92II	CATG	3 cut(s)	237, 310, 456
KflI	GGGWCCC	1 cut(s)	246
Kpn2I	TCCGGA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	210, 492
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	66, 90, 385, 412, 489
MaeI	CTAG	7 cut(s)	191, 242, 272, 323, 329, 383, 415
MaeIII	GTNAC	2 cut(s)	6, 331
MalI	GATC	2 cut(s)	212, 494
MboI	GATC	2 cut(s)	210, 492
MboII	GAAGA	5 cut(s)	38, 73, 79, 195, 370
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	87, 472
MluCI	AATT	2 cut(s)	217, 558
MnlI	CCTC	9 cut(s)	49, 73, 84, 192, 222, 338, 348, 414, 422
MroI	TCCGGA	1 cut(s)	76
MseI	TTAA	1 cut(s)	314
MspI	CCGG	3 cut(s)	53, 77, 476
MspR9I	CCNGG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	2 cut(s)	238, 430
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	2 cut(s)	210, 492
NlaIII	CATG	3 cut(s)	237, 310, 456
NlaIV	GGNNCC	5 cut(s)	212, 247, 248, 450, 471
NmuCI	GTSAC	2 cut(s)	6, 331
PagI	TCATGA	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	546
PpuMI	RGGWCCY	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	5 cut(s)	212, 247, 248, 450, 471
PspPI	GGNCC	2 cut(s)	246, 449
PspPPI	RGGWCCY	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	545
Sau3AI	GATC	2 cut(s)	210, 492
Sau96I	GGNCC	2 cut(s)	246, 449
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	87, 472
SetI	ASST	8 cut(s)	50, 87, 102, 171, 281, 382, 490, 501
SinI	GGWCC	2 cut(s)	246, 449
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	217, 558
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	545
SspMI	CTAG	7 cut(s)	191, 242, 272, 323, 329, 383, 415
SstI	GAGCTC	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	398
TasI	AATT	2 cut(s)	217, 558
TauI	GCSGC	1 cut(s)	547
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseFI	GTSAC	2 cut(s)	6, 331
Tsp45I	GTSAC	2 cut(s)	6, 331
TspDTI	ATGAA	1 cut(s)	250
VpaK11BI	GGWCC	2 cut(s)	246, 449
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	7 cut(s)	191, 242, 272, 323, 329, 383, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.