transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 750 |
| AccB1I | GGYRCC | 2 cut(s) | 589, 869 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 982 |
| AccI | GTMKAC | 1 cut(s) | 1006 |
| AciI | CCGC | 3 cut(s) | 354, 1139, 1208 |
| AclWI | GGATC | 4 cut(s) | 29, 1289, 1302, 1631 |
| AcsI | RAATTY | 4 cut(s) | 799, 910, 1343, 1678 |
| AfaI | GTAC | 9 cut(s) | 223, 891, 971, 1061, 1127, 1252, 1509, 1526, 1663 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 218, 982, 1631 |
| AflII | CTTAAG | 1 cut(s) | 1319 |
| AhlI | ACTAGT | 1 cut(s) | 1226 |
| AluBI | AGCT | 2 cut(s) | 78, 1042 |
| AluI | AGCT | 2 cut(s) | 78, 1042 |
| Alw21I | GWGCWC | 3 cut(s) | 669, 1077, 1316 |
| Alw26I | GTCTC | 5 cut(s) | 84, 336, 515, 576, 1124 |
| Alw44I | GTGCAC | 2 cut(s) | 665, 1073 |
| AlwI | GGATC | 4 cut(s) | 29, 1289, 1302, 1631 |
| Ama87I | CYCGRG | 1 cut(s) | 275 |
| AoxI | GGCC | 4 cut(s) | 540, 1165, 1278, 1593 |
| ApaLI | GTGCAC | 2 cut(s) | 665, 1073 |
| ApoI | RAATTY | 4 cut(s) | 799, 910, 1343, 1678 |
| AseI | ATTAAT | 1 cut(s) | 1476 |
| AspS9I | GGNCC | 3 cut(s) | 1165, 1305, 1325 |
| AsuC2I | CCSGG | 6 cut(s) | 276, 277, 417, 956, 1067, 1641 |
| AsuHPI | GGTGA | 3 cut(s) | 201, 1003, 1480 |
| AsuII | TTCGAA | 1 cut(s) | 254 |
| AvaI | CYCGRG | 1 cut(s) | 275 |
| AvaII | GGWCC | 2 cut(s) | 1305, 1325 |
| BaeGI | GKGCMC | 2 cut(s) | 669, 1077 |
| BamHI | GGATCC | 1 cut(s) | 1294 |
| BanI | GGYRCC | 2 cut(s) | 589, 869 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 873, 905, 953, 985, 1043, 1075 |
| BauI | CACGAG | 2 cut(s) | 874, 894 |
| BbsI | GAAGAC | 1 cut(s) | 1093 |
| Bbv12I | GWGCWC | 3 cut(s) | 669, 1077, 1316 |
| BccI | CCATC | 2 cut(s) | 860, 941 |
| BceAI | ACGGC | 1 cut(s) | 1265 |
| BcnI | CCSGG | 6 cut(s) | 276, 277, 417, 956, 1067, 1641 |
| BcoDI | GTCTC | 5 cut(s) | 84, 336, 515, 576, 1124 |
| BcuI | ACTAGT | 1 cut(s) | 1226 |
| BfrI | CTTAAG | 1 cut(s) | 1319 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 159, 1286 |
| BglII | AGATCT | 1 cut(s) | 1699 |
| BmcAI | AGTACT | 2 cut(s) | 1252, 1526 |
| Bme1390I | CCNGG | 6 cut(s) | 276, 277, 417, 956, 1067, 1641 |
| Bme18I | GGWCC | 2 cut(s) | 1305, 1325 |
| BmeT110I | CYCGRG | 1 cut(s) | 275 |
| BmgT120I | GGNCC | 3 cut(s) | 1165, 1305, 1325 |
| BmiI | GGNNCC | 7 cut(s) | 591, 871, 953, 1296, 1306, 1326, 1327 |
| BmrFI | CCNGG | 6 cut(s) | 276, 277, 417, 956, 1067, 1641 |
| BmsI | GCATC | 4 cut(s) | 152, 1192, 1395, 1634 |
| BpiI | GAAGAC | 1 cut(s) | 1093 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 818, 850, 1580, 1612 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1148, 1290 |
| Bpu14I | TTCGAA | 1 cut(s) | 254 |
| BpuEI | CTTGAG | 5 cut(s) | 88, 148, 510, 1353, 1400 |
| BpuMI | CCSGG | 6 cut(s) | 276, 277, 417, 956, 1067, 1641 |
| BsaI | GGTCTC | 1 cut(s) | 576 |
| BsaJI | CCNNGG | 6 cut(s) | 14, 118, 275, 349, 955, 1329 |
| BsaWI | WCCGGW | 1 cut(s) | 1255 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 670, 700, 1268, 1298 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 218, 982, 1631 |
| Bse3DI | GCAATG | 1 cut(s) | 907 |
| BseDI | CCNNGG | 6 cut(s) | 14, 118, 275, 349, 955, 1329 |
| BseGI | GGATG | 7 cut(s) | 737, 952, 1135, 1410, 1498, 1570, 1649 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 218, 982, 1631 |
| BseMI | GCAATG | 1 cut(s) | 907 |
| BseRI | GAGGAG | 2 cut(s) | 724, 1604 |
| BseSI | GKGCMC | 2 cut(s) | 669, 1077 |
| BseYI | CCCAGC | 1 cut(s) | 1042 |
| BshFI | GGCC | 4 cut(s) | 542, 1167, 1280, 1595 |
| BshNI | GGYRCC | 2 cut(s) | 589, 869 |
| BsiHKAI | GWGCWC | 3 cut(s) | 669, 1077, 1316 |
| BsiHKCI | CYCGRG | 1 cut(s) | 275 |
| BsiSI | CCGG | 6 cut(s) | 276, 417, 955, 1067, 1256, 1641 |
| BslFI | GGGAC | 4 cut(s) | 167, 1311, 1318, 1640 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 218, 982, 1631 |
| BsmAI | GTCTC | 5 cut(s) | 84, 336, 515, 576, 1124 |
| BsmFI | GGGAC | 4 cut(s) | 167, 1311, 1318, 1640 |
| BsmI | GAATGC | 2 cut(s) | 553, 1620 |
| BsnI | GGCC | 4 cut(s) | 542, 1167, 1280, 1595 |
| Bso31I | GGTCTC | 1 cut(s) | 576 |
| BsoBI | CYCGRG | 1 cut(s) | 275 |
| Bsp119I | TTCGAA | 1 cut(s) | 254 |
| Bsp1286I | GDGCHC | 3 cut(s) | 669, 1077, 1316 |
| Bsp143I | GATC | 5 cut(s) | 21, 471, 1294, 1636, 1699 |
| Bsp19I | CCATGG | 1 cut(s) | 1329 |
| BspACI | CCGC | 3 cut(s) | 354, 1139, 1208 |
| BspANI | GGCC | 4 cut(s) | 542, 1167, 1280, 1595 |
| BspLI | GGNNCC | 7 cut(s) | 591, 871, 953, 1296, 1306, 1326, 1327 |
| BspPI | GGATC | 4 cut(s) | 29, 1289, 1302, 1631 |
| BspT104I | TTCGAA | 1 cut(s) | 254 |
| BspT107I | GGYRCC | 2 cut(s) | 589, 869 |
| BspTI | CTTAAG | 1 cut(s) | 1319 |
| BspTNI | GGTCTC | 1 cut(s) | 576 |
| BsrDI | GCAATG | 1 cut(s) | 907 |
| BssECI | CCNNGG | 6 cut(s) | 14, 118, 275, 349, 955, 1329 |
| BssMI | GATC | 5 cut(s) | 21, 471, 1294, 1636, 1699 |
| BssNAI | GTATAC | 1 cut(s) | 1007 |
| BssSI | CACGAG | 2 cut(s) | 874, 894 |
| BssT1I | CCWWGG | 4 cut(s) | 14, 118, 349, 1329 |
| Bst1107I | GTATAC | 1 cut(s) | 1007 |
| Bst2BI | CACGAG | 2 cut(s) | 874, 894 |
| Bst4CI | ACNGT | 1 cut(s) | 589 |
| Bst6I | CTCTTC | 5 cut(s) | 420, 501, 550, 579, 1394 |
| BstAFI | CTTAAG | 1 cut(s) | 1319 |
| BstBI | TTCGAA | 1 cut(s) | 254 |
| BstC8I | GCNNGC | 2 cut(s) | 505, 615 |
| BstDEI | CTNAG | 5 cut(s) | 635, 1148, 1239, 1290, 1583 |
| BstDSI | CCRYGG | 1 cut(s) | 1329 |
| BstF5I | GGATG | 7 cut(s) | 737, 952, 1135, 1410, 1498, 1570, 1649 |
| BstKTI | GATC | 5 cut(s) | 24, 474, 1297, 1639, 1702 |
| BstMAI | GTCTC | 5 cut(s) | 84, 336, 515, 576, 1124 |
| BstMBI | GATC | 5 cut(s) | 21, 471, 1294, 1636, 1699 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 159, 467, 1286, 1381 |
| BstNSI | RCATGY | 5 cut(s) | 386, 673, 704, 779, 1156 |
| BstSCI | CCNGG | 6 cut(s) | 274, 275, 415, 954, 1065, 1639 |
| BstSLI | GKGCMC | 2 cut(s) | 669, 1077 |
| BstV2I | GAAGAC | 1 cut(s) | 1093 |
| BstX2I | RGATCY | 3 cut(s) | 1294, 1636, 1699 |
| BstYI | RGATCY | 3 cut(s) | 1294, 1636, 1699 |
| BstZ17I | GTATAC | 1 cut(s) | 1007 |
| BsuRI | GGCC | 4 cut(s) | 542, 1167, 1280, 1595 |
| BtgI | CCRYGG | 1 cut(s) | 1329 |
| BtgZI | GCGATG | 1 cut(s) | 129 |
| BtsCI | GGATG | 7 cut(s) | 737, 952, 1135, 1410, 1498, 1570, 1649 |
| Cac8I | GCNNGC | 2 cut(s) | 505, 615 |
| Cfr13I | GGNCC | 3 cut(s) | 1165, 1305, 1325 |
| Cfr9I | CCCGGG | 1 cut(s) | 275 |
| CseI | GACGC | 1 cut(s) | 1421 |
| Csp6I | GTAC | 9 cut(s) | 222, 890, 970, 1060, 1126, 1251, 1508, 1525, 1662 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 34, 1161, 1196 |
| CviQI | GTAC | 9 cut(s) | 222, 890, 970, 1060, 1126, 1251, 1508, 1525, 1662 |
| DdeI | CTNAG | 5 cut(s) | 635, 1148, 1239, 1290, 1583 |
| DpnI | GATC | 5 cut(s) | 23, 473, 1296, 1638, 1701 |
| DpnII | GATC | 5 cut(s) | 21, 471, 1294, 1636, 1699 |
| DraI | TTTAAA | 1 cut(s) | 918 |
| Eam1104I | CTCTTC | 5 cut(s) | 420, 501, 550, 579, 1394 |
| EarI | CTCTTC | 5 cut(s) | 420, 501, 550, 579, 1394 |
| EciI | GGCGGA | 1 cut(s) | 1223 |
| Eco130I | CCWWGG | 4 cut(s) | 14, 118, 349, 1329 |
| Eco147I | AGGCCT | 1 cut(s) | 1595 |
| Eco31I | GGTCTC | 1 cut(s) | 576 |
| Eco47I | GGWCC | 2 cut(s) | 1305, 1325 |
| Eco88I | CYCGRG | 1 cut(s) | 275 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1325 |
| EcoT14I | CCWWGG | 4 cut(s) | 14, 118, 349, 1329 |
| EcoT22I | ATGCAT | 3 cut(s) | 219, 555, 927 |
| ErhI | CCWWGG | 4 cut(s) | 14, 118, 349, 1329 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 558, 590 |
| FaqI | GGGAC | 4 cut(s) | 167, 1311, 1318, 1640 |
| FauI | CCCGC | 1 cut(s) | 347 |
| FauNDI | CATATG | 3 cut(s) | 1221, 1516, 1729 |
| FblI | GTMKAC | 1 cut(s) | 1006 |
| FokI | GGATG | 7 cut(s) | 724, 959, 1122, 1417, 1505, 1577, 1656 |
| GsaI | CCCAGC | 1 cut(s) | 1046 |
| HaeIII | GGCC | 4 cut(s) | 542, 1167, 1280, 1595 |
| HapII | CCGG | 6 cut(s) | 276, 417, 955, 1067, 1256, 1641 |
| HgaI | GACGC | 1 cut(s) | 1421 |
| HinfI | GANTC | 6 cut(s) | 92, 491, 523, 935, 1214, 1606 |
| HpaII | CCGG | 6 cut(s) | 276, 417, 955, 1067, 1256, 1641 |
| HphI | GGTGA | 3 cut(s) | 201, 1003, 1480 |
| Hpy166II | GTNNAC | 6 cut(s) | 224, 440, 667, 1007, 1075, 1158 |
| Hpy188III | TCNNGA | 5 cut(s) | 558, 1370, 1417, 1462, 1697 |
| Hpy8I | GTNNAC | 6 cut(s) | 224, 440, 667, 1007, 1075, 1158 |
| HpyAV | CCTTC | 4 cut(s) | 1076, 1459, 1525, 1548 |
| HpyCH4III | ACNGT | 1 cut(s) | 589 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 159, 467, 1286, 1381 |
| HpyF3I | CTNAG | 5 cut(s) | 635, 1148, 1239, 1290, 1583 |
| KflI | GGGWCCC | 1 cut(s) | 1325 |
| Kzo9I | GATC | 5 cut(s) | 21, 471, 1294, 1636, 1699 |
| LmnI | GCTCC | 3 cut(s) | 391, 784, 1706 |
| LpnPI | CCDG | 9 cut(s) | 289, 430, 489, 968, 989, 1028, 1080, 1269, 1654 |
| LweI | GCATC | 4 cut(s) | 152, 1192, 1395, 1634 |
| MaeIII | GTNAC | 4 cut(s) | 131, 235, 378, 1334 |
| MalI | GATC | 5 cut(s) | 23, 473, 1296, 1638, 1701 |
| MboI | GATC | 5 cut(s) | 21, 471, 1294, 1636, 1699 |
| MflI | RGATCY | 3 cut(s) | 1294, 1636, 1699 |
| MhlI | GDGCHC | 3 cut(s) | 669, 1077, 1316 |
| MlyI | GAGTC | 2 cut(s) | 86, 517 |
| MmeI | TCCRAC | 1 cut(s) | 886 |
| Mph1103I | ATGCAT | 3 cut(s) | 219, 555, 927 |
| MseI | TTAA | 4 cut(s) | 917, 1320, 1476, 1500 |
| MslI | CAYNNNNRTG | 4 cut(s) | 231, 399, 705, 774 |
| MspCI | CTTAAG | 1 cut(s) | 1319 |
| MspI | CCGG | 6 cut(s) | 276, 417, 955, 1067, 1256, 1641 |
| MspR9I | CCNGG | 6 cut(s) | 276, 277, 417, 956, 1067, 1641 |
| Mva1269I | GAATGC | 2 cut(s) | 553, 1620 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 159, 467, 1286, 1381 |
| NciI | CCSGG | 6 cut(s) | 276, 277, 417, 956, 1067, 1641 |
| NcoI | CCATGG | 1 cut(s) | 1329 |
| NdeI | CATATG | 3 cut(s) | 1221, 1516, 1729 |
| NdeII | GATC | 5 cut(s) | 21, 471, 1294, 1636, 1699 |
| NlaIV | GGNNCC | 7 cut(s) | 591, 871, 953, 1296, 1306, 1326, 1327 |
| NmuCI | GTSAC | 2 cut(s) | 235, 378 |
| NsiI | ATGCAT | 3 cut(s) | 219, 555, 927 |
| NspI | RCATGY | 5 cut(s) | 386, 673, 704, 779, 1156 |
| NspV | TTCGAA | 1 cut(s) | 254 |
| PceI | AGGCCT | 1 cut(s) | 1595 |
| PctI | GAATGC | 2 cut(s) | 553, 1620 |
| PfeI | GAWTC | 4 cut(s) | 491, 935, 1214, 1606 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 982 |
| PfoI | TCCNGGA | 2 cut(s) | 1065, 1639 |
| PleI | GAGTC | 2 cut(s) | 86, 517 |
| PpsI | GAGTC | 2 cut(s) | 86, 517 |
| PpuMI | RGGWCCY | 1 cut(s) | 1325 |
| PshBI | ATTAAT | 1 cut(s) | 1476 |
| PsiI | TTATAA | 1 cut(s) | 750 |
| Psp5II | RGGWCCY | 1 cut(s) | 1325 |
| PspFI | CCCAGC | 1 cut(s) | 1042 |
| PspN4I | GGNNCC | 7 cut(s) | 591, 871, 953, 1296, 1306, 1326, 1327 |
| PspPI | GGNCC | 3 cut(s) | 1165, 1305, 1325 |
| PspPPI | RGGWCCY | 1 cut(s) | 1325 |
| PsuI | RGATCY | 3 cut(s) | 1294, 1636, 1699 |
| RsaI | GTAC | 9 cut(s) | 223, 891, 971, 1061, 1127, 1252, 1509, 1526, 1663 |
| RsaNI | GTAC | 9 cut(s) | 222, 890, 970, 1060, 1126, 1251, 1508, 1525, 1662 |
| RseI | CAYNNNNRTG | 4 cut(s) | 231, 399, 705, 774 |
| SaqAI | TTAA | 4 cut(s) | 917, 1320, 1476, 1500 |
| Sau3AI | GATC | 5 cut(s) | 21, 471, 1294, 1636, 1699 |
| Sau96I | GGNCC | 3 cut(s) | 1165, 1305, 1325 |
| ScaI | AGTACT | 2 cut(s) | 1252, 1526 |
| SchI | GAGTC | 2 cut(s) | 86, 517 |
| ScrFI | CCNGG | 6 cut(s) | 276, 277, 417, 956, 1067, 1641 |
| SduI | GDGCHC | 3 cut(s) | 669, 1077, 1316 |
| SfaNI | GCATC | 4 cut(s) | 152, 1192, 1395, 1634 |
| SfuI | TTCGAA | 1 cut(s) | 254 |
| SinI | GGWCC | 2 cut(s) | 1305, 1325 |
| SmaI | CCCGGG | 1 cut(s) | 277 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 231, 399, 705, 774 |
| SmlI | CTYRAG | 6 cut(s) | 103, 163, 525, 1319, 1368, 1415 |
| SmoI | CTYRAG | 6 cut(s) | 103, 163, 525, 1319, 1368, 1415 |
| SpeI | ACTAGT | 1 cut(s) | 1226 |
| SseBI | AGGCCT | 1 cut(s) | 1595 |
| SsiI | CCGC | 3 cut(s) | 354, 1139, 1208 |
| SspI | AATATT | 2 cut(s) | 1474, 1480 |
| StuI | AGGCCT | 1 cut(s) | 1595 |
| StyD4I | CCNGG | 6 cut(s) | 274, 275, 415, 954, 1065, 1639 |
| StyI | CCWWGG | 4 cut(s) | 14, 118, 349, 1329 |
| TaaI | ACNGT | 1 cut(s) | 589 |
| TaqI | TCGA | 1 cut(s) | 254 |
| TatI | WGTACW | 3 cut(s) | 1059, 1250, 1524 |
| TfiI | GAWTC | 4 cut(s) | 491, 935, 1214, 1606 |
| Tru1I | TTAA | 4 cut(s) | 917, 1320, 1476, 1500 |
| Tru9I | TTAA | 4 cut(s) | 917, 1320, 1476, 1500 |
| TseFI | GTSAC | 2 cut(s) | 235, 378 |
| Tsp45I | GTSAC | 2 cut(s) | 235, 378 |
| TspDTI | ATGAA | 6 cut(s) | 162, 326, 672, 1124, 1438, 1584 |
| TspMI | CCCGGG | 1 cut(s) | 275 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 982 |
| Vha464I | CTTAAG | 1 cut(s) | 1319 |
| VneI | GTGCAC | 2 cut(s) | 665, 1073 |
| VpaK11BI | GGWCC | 2 cut(s) | 1305, 1325 |
| VspI | ATTAAT | 1 cut(s) | 1476 |
| XapI | RAATTY | 4 cut(s) | 799, 910, 1343, 1678 |
| XbaI | TCTAGA | 1 cut(s) | 1696 |
| XceI | RCATGY | 5 cut(s) | 386, 673, 704, 779, 1156 |
| XmaI | CCCGGG | 1 cut(s) | 275 |
| XmiI | GTMKAC | 1 cut(s) | 1006 |
| ZrmI | AGTACT | 2 cut(s) | 1252, 1526 |
| Zsp2I | ATGCAT | 3 cut(s) | 219, 555, 927 |