Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002564.1

Orthogroup ID

OG0001407

Physical Location & Seq

Genomic Coordinates Forward (+)

45785 .. 46570

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002564.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgaggggaggaataaggaggaagatttacatatgcatggtagctctagggataggagttgtccgggacccatctacggccgataacacctctaggaaggttcttgatgacattagacccaccactcatgagtttgagccatctacttctagagaaaatgaggggaggaataaggagaaagatttacatatgcatggtagctctagggatacgagtggtccggtctactcatcactaggcgaggccttaagggctaagaaccctaatgagaccgtgactacccttaggggcactaccggaagtctcacatttgatccacctcttgatttgaatacattggagccaccacttccttatcctaatgccgcaagaagagataattcaaagagggctaagaagaagagtggcttgatgagggggatacaagaaatatttaagaaagtggatgtcaatatctcattgatagacctcattcatcaagtgccggtgcatgctcaatttctcaagagcttgtgcatgaataaaaagaaatttaaagccgatgagacatttgagttgaaggaggaagtaagtgcaattattcaacgaagactaccaccaaagatgcaagatccggggagctttacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 ko05010 map03410 map04210 map04212 map04214 map04217 map05010

Pfam Domains

Protein Families

Exo_endo_phos_2 RVT_1 RVT_3 zf-RVT

Protein Analysis

209

Amino Acids

23.44

Weight (kDa)

9.63

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10250 FvH4_4g10250 FvH4_6g21790
rosa_chinensis	RchiOBHm_Chr2g0133891 RchiOBHm_Chr3g0452821 RchiOBHm_Chr3g0452831 RchiOBHm_Chr5g0042701 RchiOBHm_Chr5g0080601 RchiOBHm_Chr6g0279391
rosa_multiflora	Rmu_co8061076.1_g000001 Rmu_co8477889.1_g000001 Rmu_co8492139.1_g000002 Rmu_sc0000083.1_g000025 Rmu_sc0000084.1_g000033 Rmu_sc0000239.1_g000083 Rmu_sc0000427.1_g000012 Rmu_sc0000677.1_g000017 Rmu_sc0000684.1_g000015 Rmu_sc0000893.1_g000006 Rmu_sc0001047.1_g000017 Rmu_sc0001124.1_g000001 Rmu_sc0001353.1_g000052 Rmu_sc0001575.1_g000031 Rmu_sc0001687.1_g000017 Rmu_sc0002083.1_g000017 Rmu_sc0002083.1_g000018 Rmu_sc0002319.1_g000002 Rmu_sc0002385.1_g000007 Rmu_sc0002472.1_g000033 Rmu_sc0002564.1_g000008 Rmu_sc0002564.1_g000009 Rmu_sc0002702.1_g000010 Rmu_sc0003499.1_g000003 Rmu_sc0003527.1_g000011 Rmu_sc0003882.1_g000025 Rmu_sc0003882.1_g000047 Rmu_sc0004191.1_g000027 Rmu_sc0004431.1_g000007 Rmu_sc0005670.1_g000007 Rmu_sc0006954.1_g000001 Rmu_sc0008128.1_g000002 Rmu_sc0012865.1_g000004 Rmu_sc0013815.1_g000001 Rmu_sc0017745.1_g000001 Rmu_ssc0000350.1_g000007
rosa_roxburghii	Rroxscaffold_1G00030490 Rroxscaffold_2G00129400 Rroxscaffold_3G00218530 Rroxscaffold_4G00320090 Rroxscaffold_4G00322270
rosa_samantha	Rh1CG054500 Rh5BG351400
rosa_wichuraiana	Rw5G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	2 cut(s)	308, 605
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	331, 384, 559, 584
AluBI	AGCT	4 cut(s)	44, 201, 510, 621
AluI	AGCT	4 cut(s)	44, 201, 510, 621
Alw26I	GTCTC	3 cut(s)	263, 308, 539
AlwI	GGATC	2 cut(s)	308, 605
AoxI	GGCC	2 cut(s)	78, 243
ApoI	RAATTY	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	67, 218
AsuC2I	CCSGG	2 cut(s)	65, 615
AvaII	GGWCC	2 cut(s)	67, 218
AxyI	CCTNAGG	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	595
BccI	CCATC	2 cut(s)	79, 148
BceAI	ACGGC	1 cut(s)	93
BciVI	GTATCC	2 cut(s)	202, 414
BcnI	CCSGG	2 cut(s)	65, 615
BcoDI	GTCTC	3 cut(s)	263, 308, 539
BfaI	CTAG	5 cut(s)	47, 93, 150, 204, 236
BfrI	CTTAAG	1 cut(s)	247
BfuI	GTATCC	2 cut(s)	202, 414
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	65, 615
Bme18I	GGWCC	2 cut(s)	67, 218
BmgT120I	GGNCC	2 cut(s)	67, 218
BmiI	GGNNCC	3 cut(s)	68, 69, 342
BmrFI	CCNGG	2 cut(s)	65, 615
BmsI	GCATC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	595
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	2 cut(s)	65, 615
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	614
BsaWI	WCCGGW	2 cut(s)	220, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	484
Bse21I	CCTNAGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	293
BseX3I	CGGCCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	80, 245
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	5 cut(s)	64, 221, 297, 485, 614
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	3 cut(s)	263, 308, 539
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	80, 245
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	313, 610
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	2 cut(s)	80, 245
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	68, 69, 342
BspPI	GGATC	2 cut(s)	308, 605
BspTI	CTTAAG	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	2 cut(s)	313, 610
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	367, 395
BstAFI	CTTAAG	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	255, 284, 393
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	2 cut(s)	316, 613
BstMAI	GTCTC	3 cut(s)	263, 308, 539
BstMBI	GATC	2 cut(s)	313, 610
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	63, 613
BstSLI	GKGCMC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BstZI	CGGCCG	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	284
BsuI	GTATCC	2 cut(s)	202, 414
BsuRI	GGCC	2 cut(s)	80, 245
BtsCI	GGATG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	492
CciI	TCATGA	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	67, 218
CviAII	CATG	5 cut(s)	37, 128, 194, 491, 517
DdeI	CTNAG	3 cut(s)	255, 284, 393
DpnI	GATC	2 cut(s)	315, 612
DpnII	GATC	2 cut(s)	313, 610
DraI	TTTAAA	1 cut(s)	535
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	367, 395
EarI	CTCTTC	2 cut(s)	367, 395
EclXI	CGGCCG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	2 cut(s)	67, 218
Eco52I	CGGCCG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	67
EcoT22I	ATGCAT	2 cut(s)	38, 195
FaeI	CATG	5 cut(s)	40, 131, 197, 494, 520
FaiI	YATR	9 cut(s)	32, 34, 38, 129, 189, 191, 195, 492, 518
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	5 cut(s)	36, 127, 193, 490, 516
FauNDI	CATATG	2 cut(s)	32, 189
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	5 cut(s)	47, 93, 150, 204, 236
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	80, 245
HapII	CCGG	5 cut(s)	64, 221, 297, 485, 614
Hin1II	CATG	5 cut(s)	40, 131, 197, 494, 520
HpaII	CCGG	5 cut(s)	64, 221, 297, 485, 614
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188III	TCNNGA	5 cut(s)	104, 128, 150, 323, 505
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	91, 553
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	6 cut(s)	36, 193, 490, 516, 575, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	3 cut(s)	255, 284, 393
Hsp92II	CATG	5 cut(s)	40, 131, 197, 494, 520
KflI	GGGWCCC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	313, 610
LmnI	GCTCC	2 cut(s)	340, 618
LpnPI	CCDG	4 cut(s)	77, 234, 310, 498
LweI	GCATC	1 cut(s)	594
MaeI	CTAG	5 cut(s)	47, 93, 150, 204, 236
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	315, 612
MboI	GATC	2 cut(s)	313, 610
MboII	GAAGA	5 cut(s)	34, 384, 409, 412, 600
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	4 cut(s)	379, 497, 530, 576
Mph1103I	ATGCAT	2 cut(s)	38, 195
MseI	TTAA	3 cut(s)	248, 435, 534
MslI	CAYNNNNRTG	2 cut(s)	35, 192
MspCI	CTTAAG	1 cut(s)	247
MspI	CCGG	5 cut(s)	64, 221, 297, 485, 614
MspR9I	CCNGG	2 cut(s)	65, 615
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	2 cut(s)	65, 615
NdeI	CATATG	2 cut(s)	32, 189
NdeII	GATC	2 cut(s)	313, 610
NlaIII	CATG	5 cut(s)	40, 131, 197, 494, 520
NlaIV	GGNNCC	3 cut(s)	68, 69, 342
NmuCI	GTSAC	1 cut(s)	274
NsiI	ATGCAT	2 cut(s)	38, 195
NspI	RCATGY	1 cut(s)	494
PaeI	GCATGC	1 cut(s)	494
PagI	TCATGA	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	245
PfoI	TCCNGGA	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
PspN4I	GGNNCC	3 cut(s)	68, 69, 342
PspPI	GGNCC	2 cut(s)	67, 218
PspPPI	RGGWCCY	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	610
RseI	CAYNNNNRTG	2 cut(s)	35, 192
SaqAI	TTAA	3 cut(s)	248, 435, 534
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	2 cut(s)	313, 610
Sau96I	GGNCC	2 cut(s)	67, 218
ScrFI	CCNGG	2 cut(s)	65, 615
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	9 cut(s)	46, 92, 102, 203, 322, 471, 512, 623, 629
SfaNI	GCATC	1 cut(s)	594
SinI	GGWCC	2 cut(s)	67, 218
SmiMI	CAYNNNNRTG	2 cut(s)	35, 192
SmlI	CTYRAG	2 cut(s)	247, 503
SmoI	CTYRAG	2 cut(s)	247, 503
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	4 cut(s)	379, 497, 530, 576
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	1 cut(s)	366
SspI	AATATT	1 cut(s)	432
SspMI	CTAG	5 cut(s)	47, 93, 150, 204, 236
StuI	AGGCCT	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	63, 613
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	4 cut(s)	379, 497, 530, 576
TauI	GCSGC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	248, 435, 534
Tru9I	TTAA	3 cut(s)	248, 435, 534
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	464, 533
Vha464I	CTTAAG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	67, 218
XapI	RAATTY	1 cut(s)	530
XbaI	TCTAGA	1 cut(s)	149
XceI	RCATGY	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	5 cut(s)	47, 93, 150, 204, 236
Zsp2I	ATGCAT	2 cut(s)	38, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.