FvH4_5g36070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000458
Physical Location & Seq
Reverse (-)
26437931 .. 26439355
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36070.t1

Sequence Viewer

Length: 1425 bp
ATGAGCTATCCCTACTACTCTCCTCCACCACCTTCACCACCTCTCCCTTGTGCTCCTCCCCCACCGTCTCCGCCACCCCCATGTAACCCTGTAACCCCATCACCACCTCCACCTCCACCACCTCACCGCCACGGCCATCATCACCATCATCATCCAAAATCACCCCCGAAACACTACAATGTGCAACCACCTCCTCCTCCTCCATCACCATCACCGCCACCTCCCCATCACCATGACTATCCCAAGCCACCGCCTCTGTCATCTCCTCCTCCACCACCTCCTCACCATGACTATCCTAAGCCACCATCTTCTTCACCTCCACCACCACCACATCATCATCACCATCACTACCCTAAAGCATCACCTCCTCCTCCATCACCATCTCCTCCTCCACCTCACCACCATGACTATCCTAAACCTCCTCCACCTTCACCGTCACCACCTCACCACCATGACTACCCTAAACCTCCCCCGCCCACTGCTTCACCACCACACCACCATCACTACCCTAAACCTCCACCACCCACTGCTTCACCACCTCACCACCATGACTACCCTAAACCTCCACCACCTATTGCTTCACCACCGCATCACCATCACTACCCACCGCCAACCTGGGCTACTCCTCCAGCTTCACCACCATCAGTTCCAGCACTGCCACCGCCCCATTATGCTCCTCCACCACATGGTTATCATCACACCCCACCCACTGTTCCACCACCACATTACTCTCCAAAATCATCACCCCCAAAACCCAGCTATGAGGCGCCGCCACCAAAGTCGTACCCGCCAAAGCCAAGTAAGGGCGCACCACCACCCAAGTCGTACCCGCCAAAGCCAAGTAAGGGCGCACCACCACCCAAGTCGTACCCACCAAAGCCAAGTAAGGGTGCACCACCACCCAAGTCGTACCCACCAAAGCCCAGTAAGGGAGCTCCACCCCCGAAATCTTACCCACCAAAGCCTAGCAAGGGTGCGCCACCTCCAGGGTACAATGGACACTTTCCTCCTCCCATATACTACGGCGCTCCTCCTCCACCTTTTGGAGGTATCCCACCGTCCTCAAACGTCGTGGCCCCACCTCCCGGCGGGAAAAACCACACCACAGTCATCGCCGTGTGTGTCTCACTAGGCGGTGCATTCTGCCTCGCATTCCTCCTGGTCGGTCTCTTTTGCTTAGCCAAGAAGAAGAAGAAGAGAGTGATGGTTCCCGCAGCCGTTCCTTGCGAACCCGAAGAAGAAGTCCATGAAACAGTCATAGCAACAGGTGGTTACGGCGGCGGCGAAGCTGGTGCTGCTGCAGCCGGAGGAGGAGCAGGTTACGGGGGAGAAGGAGGGGGCCCACCACCTCATCAACCTGAGATAGTCGGGGCTGGCGGCGGTGGTGCCGGTGGTGCTGGTTATGGTCATCATCCAAGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
No domains found.

Protein Analysis

475

Amino Acids

49.31

Weight (kDa)

9.5

Isoelectric Point (pI)

96.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1307
AccB1I GGYRCC 2 cut(s) 766, 1385
AccB7I CCANNNNNTGG 2 cut(s) 686, 1043
AcoI YGGCCR 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 767
AfaI GTAC 5 cut(s) 785, 827, 869, 911, 992
AjnI CCWGG 3 cut(s) 614, 985, 1158
AluBI AGCT 5 cut(s) 6, 632, 759, 935, 1289
AluI AGCT 5 cut(s) 6, 632, 759, 935, 1289
Alw21I GWGCWC 3 cut(s) 55, 895, 937
Alw26I GTCTC 3 cut(s) 72, 1129, 1172
Alw44I GTGCAC 1 cut(s) 891
AoxI GGCC 3 cut(s) 133, 1074, 1339
ApaI GGGCCC 1 cut(s) 1343
ApaLI GTGCAC 1 cut(s) 891
ApeKI GCWGC 4 cut(s) 1214, 1295, 1298, 1301
ArsI GACNNNNNNTTYG 2 cut(s) 1227, 1259
AspLEI GCGC 5 cut(s) 769, 809, 851, 979, 1028
AspS9I GGNCC 3 cut(s) 1075, 1339, 1340
AsuC2I CCSGG 1 cut(s) 1086
BaeGI GKGCMC 2 cut(s) 895, 1343
BanI GGYRCC 2 cut(s) 766, 1385
BanII GRGCYC 2 cut(s) 937, 1343
Bbv12I GWGCWC 3 cut(s) 55, 895, 937
BbvI GCAGC 4 cut(s) 1226, 1282, 1285, 1313
BceAI ACGGC 5 cut(s) 148, 1039, 1100, 1202, 1291
BcgI CGANNNNNNTGC 2 cut(s) 1274, 1308
BciT130I CCWGG 3 cut(s) 616, 987, 1160
BciVI GTATCC 1 cut(s) 1061
BcnI CCSGG 1 cut(s) 1086
BcoDI GTCTC 3 cut(s) 72, 1129, 1172
BfaI CTAG 2 cut(s) 966, 1130
BfmI CTRYAG 1 cut(s) 1299
BfoI RGCGCY 2 cut(s) 770, 1029
BfuAI ACCTGC 1 cut(s) 1307
BfuI GTATCC 1 cut(s) 1061
BisI GCNGC 8 cut(s) 770, 1215, 1279, 1282, 1296, 1299, 1302, 1378
BlpI GCTNAGC 1 cut(s) 1177
BlsI GCNGC 8 cut(s) 771, 1216, 1280, 1283, 1297, 1300, 1303, 1379
Bme1390I CCNGG 4 cut(s) 616, 987, 1086, 1160
BmgT120I GGNCC 3 cut(s) 1075, 1339, 1340
BmiI GGNNCC 6 cut(s) 768, 1077, 1209, 1340, 1341, 1387
BmrFI CCNGG 4 cut(s) 616, 987, 1086, 1160
BmrI ACTGGG 1 cut(s) 918
BmsI GCATC 2 cut(s) 368, 598
BmuI ACTGGG 1 cut(s) 918
BpmI CTGGAG 2 cut(s) 612, 969
Bpu10I CCTNAGC 1 cut(s) 297
Bpu1102I GCTNAGC 1 cut(s) 1177
BpuMI CCSGG 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 767
BsaI GGTCTC 1 cut(s) 1172
BsaJI CCNNGG 3 cut(s) 130, 615, 986
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bse118I RCCGGY 1 cut(s) 1388
Bse1I ACTGG 1 cut(s) 924
BseBI CCWGG 3 cut(s) 616, 987, 1160
BseDI CCNNGG 3 cut(s) 130, 615, 986
BseGI GGATG 2 cut(s) 151, 1411
BseMII CTCAG 1 cut(s) 1350
BseNI ACTGG 1 cut(s) 924
BseSI GKGCMC 2 cut(s) 895, 1343
BseXI GCAGC 4 cut(s) 1226, 1282, 1285, 1313
BseYI CCCAGC 1 cut(s) 755
BshFI GGCC 3 cut(s) 135, 1076, 1341
BshNI GGYRCC 2 cut(s) 766, 1385
BsiHKAI GWGCWC 3 cut(s) 55, 895, 937
BsiSI CCGG 3 cut(s) 1086, 1305, 1389
BsmAI GTCTC 3 cut(s) 72, 1129, 1172
BsmBI CGTCTC 1 cut(s) 72
BsmI GAATGC 2 cut(s) 1139, 1151
BsnI GGCC 3 cut(s) 135, 1076, 1341
Bso31I GGTCTC 1 cut(s) 1172
Bsp120I GGGCCC 1 cut(s) 1339
Bsp1286I GDGCHC 4 cut(s) 55, 895, 937, 1343
Bsp1720I GCTNAGC 1 cut(s) 1177
BspANI GGCC 3 cut(s) 135, 1076, 1341
BspCNI CTCAG 1 cut(s) 1351
BspLI GGNNCC 6 cut(s) 768, 1077, 1209, 1340, 1341, 1387
BspMAI CTGCAG 1 cut(s) 1303
BspMI ACCTGC 1 cut(s) 1307
BspT107I GGYRCC 2 cut(s) 766, 1385
BspTNI GGTCTC 1 cut(s) 1172
BsrFI RCCGGY 1 cut(s) 1388
BsrI ACTGG 1 cut(s) 924
BssAI RCCGGY 1 cut(s) 1388
BssECI CCNNGG 3 cut(s) 130, 615, 986
BssNI GRCGYC 1 cut(s) 767
Bst2UI CCWGG 3 cut(s) 616, 987, 1160
Bst4CI ACNGT 6 cut(s) 66, 435, 712, 1059, 1108, 1255
Bst6I CTCTTC 1 cut(s) 1190
BstACI GRCGYC 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 1375
BstDEI CTNAG 3 cut(s) 297, 1177, 1359
BstDSI CCRYGG 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 1044
BstF5I GGATG 2 cut(s) 151, 1411
BstH2I RGCGCY 2 cut(s) 770, 1029
BstHHI GCGC 5 cut(s) 769, 809, 851, 979, 1028
BstMAI GTCTC 3 cut(s) 72, 1129, 1172
BstMWI GCNNNNNNNGC 3 cut(s) 1295, 1301, 1394
BstNI CCWGG 3 cut(s) 616, 987, 1160
BstSCI CCNGG 4 cut(s) 614, 985, 1084, 1158
BstSFI CTRYAG 1 cut(s) 1299
BstSLI GKGCMC 2 cut(s) 895, 1343
BstV1I GCAGC 4 cut(s) 1226, 1282, 1285, 1313
BsuI GTATCC 1 cut(s) 1061
BsuRI GGCC 3 cut(s) 135, 1076, 1341
BtgI CCRYGG 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 1096
BtsCI GGATG 2 cut(s) 151, 1411
BtsI GCAGTG 3 cut(s) 477, 525, 653
BtsIMutI CAGTG 4 cut(s) 477, 525, 653, 708
BveI ACCTGC 1 cut(s) 1307
Cac8I GCNNGC 1 cut(s) 1375
CfoI GCGC 5 cut(s) 769, 809, 851, 979, 1028
Cfr10I RCCGGY 1 cut(s) 1388
Cfr13I GGNCC 3 cut(s) 1075, 1339, 1340
Csp6I GTAC 5 cut(s) 784, 826, 868, 910, 991
CspCI CAANNNNNGTGG 2 cut(s) 1053, 1088
CviAII CATG 8 cut(s) 81, 233, 287, 404, 452, 548, 686, 1247
CviQI GTAC 5 cut(s) 784, 826, 868, 910, 991
DdeI CTNAG 3 cut(s) 297, 1177, 1359
DinI GGCGCC 1 cut(s) 768
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 1190
EarI CTCTTC 1 cut(s) 1190
EciI GGCGGA 1 cut(s) 60
Ecl136II GAGCTC 1 cut(s) 935
Eco24I GRGCYC 2 cut(s) 937, 1343
Eco31I GGTCTC 1 cut(s) 1172
Eco53kI GAGCTC 1 cut(s) 935
EcoICRI GAGCTC 1 cut(s) 935
EcoNI CCTNNNNNAGG 1 cut(s) 1044
EcoO109I RGGNCCY 1 cut(s) 1339
EcoRII CCWGG 3 cut(s) 614, 985, 1158
EcoT38I GRGCYC 2 cut(s) 937, 1343
EgeI GGCGCC 1 cut(s) 768
EheI GGCGCC 1 cut(s) 768
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 8 cut(s) 84, 236, 290, 407, 455, 551, 689, 1250
FatI CATG 8 cut(s) 80, 232, 286, 403, 451, 547, 685, 1246
FauI CCCGC 5 cut(s) 480, 795, 837, 1082, 1219
Fnu4HI GCNGC 8 cut(s) 770, 1215, 1279, 1282, 1296, 1299, 1302, 1378
FokI GGATG 2 cut(s) 138, 1398
FriOI GRGCYC 2 cut(s) 937, 1343
Fsp4HI GCNGC 8 cut(s) 770, 1215, 1279, 1282, 1296, 1299, 1302, 1378
FspBI CTAG 2 cut(s) 966, 1130
GlaI GCGC 5 cut(s) 768, 808, 850, 978, 1027
GluI GCNGC 8 cut(s) 770, 1215, 1279, 1282, 1296, 1299, 1302, 1378
GsaI CCCAGC 1 cut(s) 759
GsuI CTGGAG 2 cut(s) 612, 969
HaeII RGCGCY 2 cut(s) 770, 1029
HaeIII GGCC 3 cut(s) 135, 1076, 1341
HapII CCGG 3 cut(s) 1086, 1305, 1389
HhaI GCGC 5 cut(s) 769, 809, 851, 979, 1028
Hin1I GRCGYC 1 cut(s) 767
Hin1II CATG 8 cut(s) 84, 236, 290, 407, 455, 551, 689, 1250
Hin6I GCGC 5 cut(s) 767, 807, 849, 977, 1026
HinP1I GCGC 5 cut(s) 767, 807, 849, 977, 1026
HpaII CCGG 3 cut(s) 1086, 1305, 1389
Hpy166II GTNNAC 1 cut(s) 893
Hpy8I GTNNAC 1 cut(s) 893
Hpy99I CGWCG 1 cut(s) 1073
HpyAV CCTTC 3 cut(s) 42, 438, 1325
HpyCH4III ACNGT 6 cut(s) 66, 435, 712, 1059, 1108, 1255
HpyCH4IV ACGT 1 cut(s) 1068
HpyCH4V TGCA 4 cut(s) 184, 893, 1139, 1301
HpyF10VI GCNNNNNNNGC 3 cut(s) 1295, 1301, 1394
HpyF3I CTNAG 3 cut(s) 297, 1177, 1359
HpySE526I ACGT 1 cut(s) 1068
Hsp92I GRCGYC 1 cut(s) 767
Hsp92II CATG 8 cut(s) 84, 236, 290, 407, 455, 551, 689, 1250
HspAI GCGC 5 cut(s) 767, 807, 849, 977, 1026
KasI GGCGCC 1 cut(s) 766
LmnI GCTCC 6 cut(s) 58, 679, 932, 940, 1033, 1313
Lsp1109I GCAGC 4 cut(s) 1226, 1282, 1285, 1313
LweI GCATC 2 cut(s) 368, 598
MaeI CTAG 2 cut(s) 966, 1130
MaeII ACGT 1 cut(s) 1068
MaeIII GTNAC 5 cut(s) 83, 91, 435, 1271, 1319
MboII GAAGA 8 cut(s) 300, 303, 1198, 1201, 1204, 1207, 1247, 1250
MhlI GDGCHC 4 cut(s) 55, 895, 937, 1343
Mly113I GGCGCC 1 cut(s) 767
MseI TTAA 1 cut(s) 1423
MslI CAYNNNNRTG 7 cut(s) 79, 177, 231, 402, 450, 546, 1115
MspI CCGG 3 cut(s) 1086, 1305, 1389
MspR9I CCNGG 4 cut(s) 616, 987, 1086, 1160
Mva1269I GAATGC 2 cut(s) 1139, 1151
MvaI CCWGG 3 cut(s) 616, 987, 1160
MwoI GCNNNNNNNGC 3 cut(s) 1295, 1301, 1394
NarI GGCGCC 1 cut(s) 767
NciI CCSGG 1 cut(s) 1086
NlaIII CATG 8 cut(s) 84, 236, 290, 407, 455, 551, 689, 1250
NlaIV GGNNCC 6 cut(s) 768, 1077, 1209, 1340, 1341, 1387
NmuCI GTSAC 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 1281
PctI GAATGC 2 cut(s) 1139, 1151
PflMI CCANNNNNTGG 2 cut(s) 686, 1043
PkrI GCNGC 8 cut(s) 771, 1216, 1280, 1283, 1297, 1300, 1303, 1379
PluTI GGCGCC 1 cut(s) 770
Psp124BI GAGCTC 1 cut(s) 937
Psp6I CCWGG 3 cut(s) 614, 985, 1158
PspFI CCCAGC 1 cut(s) 755
PspGI CCWGG 3 cut(s) 614, 985, 1158
PspN4I GGNNCC 6 cut(s) 768, 1077, 1209, 1340, 1341, 1387
PspOMI GGGCCC 1 cut(s) 1339
PspPI GGNCC 3 cut(s) 1075, 1339, 1340
PstI CTGCAG 1 cut(s) 1303
RsaI GTAC 5 cut(s) 785, 827, 869, 911, 992
RsaNI GTAC 5 cut(s) 784, 826, 868, 910, 991
RseI CAYNNNNRTG 7 cut(s) 79, 177, 231, 402, 450, 546, 1115
SacI GAGCTC 1 cut(s) 937
SaqAI TTAA 1 cut(s) 1423
SatI GCNGC 8 cut(s) 770, 1215, 1279, 1282, 1296, 1299, 1302, 1378
Sau96I GGNCC 3 cut(s) 1075, 1339, 1340
ScrFI CCNGG 4 cut(s) 616, 987, 1086, 1160
SduI GDGCHC 4 cut(s) 55, 895, 937, 1343
SfaNI GCATC 2 cut(s) 368, 598
SfcI CTRYAG 1 cut(s) 1299
SfoI GGCGCC 1 cut(s) 768
SmiMI CAYNNNNRTG 7 cut(s) 79, 177, 231, 402, 450, 546, 1115
SspDI GGCGCC 1 cut(s) 766
SspMI CTAG 2 cut(s) 966, 1130
SstI GAGCTC 1 cut(s) 937
StyD4I CCNGG 4 cut(s) 614, 985, 1084, 1158
TaaI ACNGT 6 cut(s) 66, 435, 712, 1059, 1108, 1255
TaiI ACGT 1 cut(s) 1071
TaqII GACCGA 1 cut(s) 1154
TauI GCSGC 4 cut(s) 772, 1281, 1284, 1380
Tru1I TTAA 1 cut(s) 1423
Tru9I TTAA 1 cut(s) 1423
TscAI CASTG 4 cut(s) 484, 532, 660, 715
TseFI GTSAC 1 cut(s) 435
TseI GCWGC 4 cut(s) 1214, 1295, 1298, 1301
Tsp45I GTSAC 1 cut(s) 435
TspDTI ATGAA 1 cut(s) 1263
TspRI CASTG 4 cut(s) 484, 532, 660, 715
Van91I CCANNNNNTGG 2 cut(s) 686, 1043
VneI GTGCAC 1 cut(s) 891
XagI CCTNNNNNAGG 1 cut(s) 1044
XcmI CCANNNNNNNNNTGG 1 cut(s) 612
XspI CTAG 2 cut(s) 966, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.