Rroxscaffold_7G00196370

Domain of unknown function (DUF3475)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
39234157 .. 39242303
8147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196370.1

Sequence Viewer

Length: 1959 bp
ATGAAATATACTTGGTGGCTTTTCATCACAATGGGTGGGATTTGCTCCAAGTCGAGGAGATCCACTGTTGAGGATGTCGCTGCAAATGTTGCTTCCACTGTGATCCTTCCTAATCTTAATGGACATGCTAGTAATGCCTCTGCTGGAGTGCCCCCCAAAGCGTCGCCGGTTATTGATGGGATGGATAAACATATACGAGACCCTTTTATGGTGCCAGAGACCAATACTATGGTACCTTATGGGCTCATCACCGATGATGTCAATGACGGCATTCCTCATTTGTCTAGAGCCTTATCGCAAAAAAGTAGAGCTAGCAAGTCTCAGCAGGCTGTTGCAAAGGTATCAGAAGTGAGCTCCCGTCTGGGCAGGGCTGGTACTGCAGGACTTGGGAAGGCTGTGGAGGTTTTGGACACCCTTGGCAGTAGCATGACAAATTTAAACCCTAGTAGTGGTTTTACCTCTGGGGTGACGACAAAAGGGAACAAAATTTCAATTTTGGCTTTTGAAGTTGCAAACACAATTGTTAAGGGTTCAAATTTAATGCAATCCCTTTCAAAGGATAACATCAAACATTTGAAAGAGGTTGTGCTTCCATCTGAAGGGGTACAGAATTTAATATCGAGAGATATGGATGAACTCCTGAGAACTGCTGCAGCTGACAAGAGAGAAGAACTTAGTGTCTTTTCGGGAGAAGTTGTGCGTTTCGGAAATCGTTGTAAAGATCCTCAGTGGCACAATTTGGATCGCTACTTTGAGAAATTGGGTTCAGAACTTACGCCTCAAAGGCAATTGAAGGAGGATGCAGAAATAGTGATGCAACAATTGATGGCCTTAGTCCAGTATACAGCTGAATTATATCATGAGTTGCATGCATTGGACCGATTTGAACAAGATTATCGGCGTAAACTTCAAGAGGAGGACAACTCCAATACCACCCAAAAAGGTGACAGCCTCGCAATTTTAAGAGCTGAGTTGAAGAGTCAAAGGAAGCATGTGAGAAATTTGAAGAAAAAATCACTCTGGTCTAGGATTCTGGAAGAGGTCATGGAGAAGCTTGTGGACATTGTGCATTACTTACATTTGGAGATCTATGAAGCATTTGGCATTGCAGATACTGATAAACCTGTGAAAGGATCTCAGAACCATCACAAAAAGTTGGGGTCTGCTGGTCTTGCCTTGCATTATGCAAATATTATCACACAAATTGATACTCTTATGTCTCGGTCAAGTTCTGTGCCTCCAAACACACGAGATACGTTATATCAAGGGCTGCCACCTGGTATAAAGTCTGCTCTGCGCTCAAAACTACAGTCATTTCAGCATACAGTCCCTCAAATCAGAGCTGAAATGGAGAAAACTTTGCAGTGGCTTGTTCCCATTGCCGCTAACACAACAAAAGCTCATCATGGCTTCGGTTGGGTCGGAGAATGGGCAAACACTGGGACTGAGATGAACCGAAAACCTGCTGGTCAGACCGACTTGCTGAGGATTGAGACACTACACCATGCTGATAAAAATAAAACTGAGTCTTACATTCTTGATCTGGTAGTGTGGCTTCATCATCTGGTCAACCAAGTGAGAGTTGGAAATAATGGAATCAGATCTCCTGTTAAGTCCCCTATTTGCTCCCCAAACCAGAGGACAATTCATTTATCTACAAACAAGCCCAGCTGTCCGTCCCCCATATTAACGGTTGAAGATCAAGAAATGCTTAGATATGTAAGTAAGAGAAAACTGACACCGGGGATTAGTAAAAGTCAGGAATTTGACACTGCAAGGACCAGGTTCAGCGAGTACCATAGGTTAAGTAAGAGTAGTAGCCAGTCTCCAACAAGTGAGCGTAGGAAGGATCCTTTTCCCATAAGGAGGCTATCCTCCGTGCCTGTCATTGACTTTGATATCGACAGGAGCAAAGCATTGGATCTCATTGATCGAGTGGACACAATTCGAAGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

652

Amino Acids

72.95

Weight (kDa)

9.33

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 165 - 221 7e-24 Domain of unknown function (DUF3475)
DUF668 PF05003 386 - 466 4e-29 Protein of unknown function (DUF668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1471
Acc65I GGTACC 1 cut(s) 232
AccB1I GGYRCC 2 cut(s) 211, 232
AccI GTMKAC 1 cut(s) 842
AciI CCGC 1 cut(s) 1383
AclWI GGATC 8 cut(s) 54, 97, 716, 750, 1141, 1844, 1857, 1929
AcsI RAATTY 6 cut(s) 433, 486, 535, 610, 1000, 1763
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 4 cut(s) 234, 376, 606, 1796
AfiI CCNNNNNNNGG 7 cut(s) 54, 208, 449, 556, 599, 1130, 1866
AjnI CCWGG 2 cut(s) 1276, 1781
AluBI AGCT 9 cut(s) 311, 354, 656, 848, 968, 1054, 1343, 1400, 1671
AluI AGCT 9 cut(s) 311, 354, 656, 848, 968, 1054, 1343, 1400, 1671
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 6 cut(s) 192, 212, 324, 1224, 1487, 1830
AlwI GGATC 8 cut(s) 54, 97, 716, 750, 1141, 1844, 1857, 1929
AlwNI CAGNNNCTG 1 cut(s) 1115
AoxI GGCC 1 cut(s) 828
ApeKI GCWGC 4 cut(s) 80, 650, 653, 1270
ApoI RAATTY 6 cut(s) 433, 486, 535, 610, 1000, 1763
ArsI GACNNNNNNTTYG 2 cut(s) 1295, 1327
Asp718I GGTACC 1 cut(s) 232
AspLEI GCGC 1 cut(s) 1299
AspS9I GGNCC 2 cut(s) 877, 1779
AsuC2I CCSGG 1 cut(s) 1743
AsuHPI GGTGA 3 cut(s) 241, 478, 956
AsuII TTCGAA 1 cut(s) 1948
AsuNHI GCTAGC 1 cut(s) 311
AvaII GGWCC 2 cut(s) 877, 1779
BaeGI GKGCMC 1 cut(s) 153
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BamHI GGATCC 1 cut(s) 1849
BanI GGYRCC 2 cut(s) 211, 232
BanII GRGCYC 2 cut(s) 246, 356
BarI GAAGNNNNNNTAC 2 cut(s) 1539, 1571
BauI CACGAG 1 cut(s) 1248
Bbv12I GWGCWC 1 cut(s) 356
BbvCI CCTCAGC 1 cut(s) 1484
BbvI GCAGC 4 cut(s) 67, 637, 665, 1257
BccI CCATC 5 cut(s) 170, 175, 601, 820, 1152
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 2 cut(s) 1278, 1783
BcnI CCSGG 1 cut(s) 1743
BcoDI GTCTC 6 cut(s) 192, 212, 324, 1224, 1487, 1830
BfaI CTAG 5 cut(s) 129, 285, 312, 444, 1026
BfmI CTRYAG 3 cut(s) 378, 651, 1307
BfuAI ACCTGC 1 cut(s) 1471
BglI GCCNNNNNGGC 1 cut(s) 784
BglII AGATCT 2 cut(s) 1086, 1601
BisI GCNGC 5 cut(s) 81, 651, 654, 1271, 1383
BlsI GCNGC 5 cut(s) 82, 652, 655, 1272, 1384
Bme1390I CCNGG 3 cut(s) 1278, 1743, 1783
Bme18I GGWCC 2 cut(s) 877, 1779
BmgT120I GGNCC 2 cut(s) 877, 1779
BmiI GGNNCC 3 cut(s) 213, 234, 1851
BmrFI CCNGG 3 cut(s) 1278, 1743, 1783
BmrI ACTGGG 1 cut(s) 1449
BmsI GCATC 2 cut(s) 790, 804
BmtI GCTAGC 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 1449
BplI GAGNNNNNCTC 2 cut(s) 908, 940
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 1484
Bpu14I TTCGAA 1 cut(s) 1948
BpuMI CCSGG 1 cut(s) 1743
BsaI GGTCTC 2 cut(s) 192, 212
BsaJI CCNNGG 2 cut(s) 415, 1742
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 7 cut(s) 54, 208, 449, 556, 599, 1130, 1866
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 3 cut(s) 838, 1444, 1822
Bse3DI GCAATG 2 cut(s) 1104, 1377
BseBI CCWGG 2 cut(s) 1278, 1783
BseDI CCNNGG 2 cut(s) 415, 1742
BseGI GGATG 4 cut(s) 79, 186, 637, 805
BseLI CCNNNNNNNGG 7 cut(s) 54, 208, 449, 556, 599, 1130, 1866
BseMI GCAATG 2 cut(s) 1104, 1377
BseMII CTCAG 8 cut(s) 335, 632, 740, 960, 1151, 1437, 1475, 1515
BseNI ACTGG 3 cut(s) 838, 1444, 1822
BseRI GAGGAG 2 cut(s) 70, 929
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 4 cut(s) 67, 637, 665, 1257
BseYI CCCAGC 1 cut(s) 1667
BshFI GGCC 1 cut(s) 830
BshNI GGYRCC 2 cut(s) 211, 232
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 2 cut(s) 167, 1742
BslFI GGGAC 4 cut(s) 1313, 1456, 1600, 1663
BslI CCNNNNNNNGG 7 cut(s) 54, 208, 449, 556, 599, 1130, 1866
BsmAI GTCTC 6 cut(s) 192, 212, 324, 1224, 1487, 1830
BsmFI GGGAC 4 cut(s) 1313, 1456, 1600, 1663
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 1 cut(s) 830
Bso31I GGTCTC 2 cut(s) 192, 212
Bsp119I TTCGAA 1 cut(s) 1948
Bsp1286I GDGCHC 3 cut(s) 153, 246, 356
BspACI CCGC 1 cut(s) 1383
BspANI GGCC 1 cut(s) 830
BspCNI CTCAG 8 cut(s) 334, 633, 739, 961, 1150, 1438, 1476, 1516
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 3 cut(s) 213, 234, 1851
BspMAI CTGCAG 2 cut(s) 382, 655
BspMI ACCTGC 1 cut(s) 1471
BspOI GCTAGC 1 cut(s) 315
BspPI GGATC 8 cut(s) 54, 97, 716, 750, 1141, 1844, 1857, 1929
BspT104I TTCGAA 1 cut(s) 1948
BspT107I GGYRCC 2 cut(s) 211, 232
BspTNI GGTCTC 2 cut(s) 192, 212
BsrDI GCAATG 2 cut(s) 1104, 1377
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 3 cut(s) 838, 1444, 1822
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 415, 1742
BssNAI GTATAC 1 cut(s) 843
BssSI CACGAG 1 cut(s) 1248
BssT1I CCWWGG 1 cut(s) 415
Bst1107I GTATAC 1 cut(s) 843
Bst2BI CACGAG 1 cut(s) 1248
Bst2UI CCWGG 2 cut(s) 1278, 1783
Bst4CI ACNGT 5 cut(s) 67, 100, 1311, 1327, 1693
Bst6I CTCTTC 2 cut(s) 971, 1032
BstAPI GCANNNNNTGC 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 1948
BstC8I GCNNGC 3 cut(s) 313, 327, 870
BstENI CCTNNNNNAGG 2 cut(s) 554, 1128
BstF5I GGATG 4 cut(s) 79, 186, 637, 805
BstHHI GCGC 1 cut(s) 1299
BstMAI GTCTC 6 cut(s) 192, 212, 324, 1224, 1487, 1830
BstMWI GCNNNNNNNGC 5 cut(s) 89, 134, 377, 784, 1172
BstNI CCWGG 2 cut(s) 1278, 1783
BstNSI RCATGY 3 cut(s) 128, 872, 995
BstSCI CCNGG 3 cut(s) 1276, 1741, 1781
BstSFI CTRYAG 3 cut(s) 378, 651, 1307
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 4 cut(s) 67, 637, 665, 1257
BstX2I RGATCY 7 cut(s) 59, 721, 1086, 1133, 1601, 1849, 1921
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 7 cut(s) 59, 721, 1086, 1133, 1601, 1849, 1921
BstZ17I GTATAC 1 cut(s) 843
BsuRI GGCC 1 cut(s) 830
BtsCI GGATG 4 cut(s) 79, 186, 637, 805
BtsI GCAGTG 2 cut(s) 1370, 1770
BtsIMutI CAGTG 6 cut(s) 63, 96, 734, 1370, 1437, 1770
BveI ACCTGC 1 cut(s) 1471
Cac8I GCNNGC 3 cut(s) 313, 327, 870
CaiI CAGNNNCTG 1 cut(s) 1115
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 1299
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 877, 1779
CseI GACGC 1 cut(s) 150
CsiI ACCWGGT 2 cut(s) 1276, 1781
Csp6I GTAC 4 cut(s) 233, 375, 605, 1795
CviAII CATG 8 cut(s) 125, 427, 860, 869, 992, 1045, 1406, 1505
CviQI GTAC 4 cut(s) 233, 375, 605, 1795
DraI TTTAAA 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 971, 1032
EarI CTCTTC 2 cut(s) 971, 1032
Ecl136II GAGCTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 415
Eco24I GRGCYC 2 cut(s) 246, 356
Eco31I GGTCTC 2 cut(s) 192, 212
Eco32I GATATC 1 cut(s) 1900
Eco47I GGWCC 2 cut(s) 877, 1779
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 618
EcoICRI GAGCTC 1 cut(s) 354
EcoNI CCTNNNNNAGG 2 cut(s) 554, 1128
EcoRII CCWGG 2 cut(s) 1276, 1781
EcoRV GATATC 1 cut(s) 1900
EcoT14I CCWWGG 1 cut(s) 415
EcoT22I ATGCAT 1 cut(s) 874
EcoT38I GRGCYC 2 cut(s) 246, 356
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 8 cut(s) 128, 430, 863, 872, 995, 1048, 1409, 1508
FalI AAGNNNNNCTT 2 cut(s) 1695, 1727
FaqI GGGAC 4 cut(s) 1313, 1456, 1600, 1663
FatI CATG 8 cut(s) 124, 426, 859, 868, 991, 1044, 1405, 1504
FblI GTMKAC 1 cut(s) 842
Fnu4HI GCNGC 5 cut(s) 81, 651, 654, 1271, 1383
FokI GGATG 4 cut(s) 86, 193, 644, 812
FriOI GRGCYC 2 cut(s) 246, 356
Fsp4HI GCNGC 5 cut(s) 81, 651, 654, 1271, 1383
FspBI CTAG 5 cut(s) 129, 285, 312, 444, 1026
GlaI GCGC 1 cut(s) 1298
GluI GCNGC 5 cut(s) 81, 651, 654, 1271, 1383
GsaI CCCAGC 1 cut(s) 1671
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 830
HapII CCGG 2 cut(s) 167, 1742
HgaI GACGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 1299
Hin1II CATG 8 cut(s) 128, 430, 863, 872, 995, 1048, 1409, 1508
Hin6I GCGC 1 cut(s) 1297
HinP1I GCGC 1 cut(s) 1297
HincII GTYRAC 1 cut(s) 1570
HindII GTYRAC 1 cut(s) 1570
HindIII AAGCTT 1 cut(s) 1052
HinfI GANTC 4 cut(s) 979, 1030, 1526, 1596
HpaII CCGG 2 cut(s) 167, 1742
HphI GGTGA 3 cut(s) 241, 478, 956
Hpy166II GTNNAC 5 cut(s) 843, 905, 1060, 1570, 1939
Hpy8I GTNNAC 5 cut(s) 843, 905, 1060, 1570, 1939
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 5 cut(s) 116, 385, 593, 787, 1840
HpyCH4III ACNGT 5 cut(s) 67, 100, 1311, 1327, 1693
HpyCH4IV ACGT 1 cut(s) 1256
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 134, 377, 784, 1172
HpySE526I ACGT 1 cut(s) 1256
Hsp92II CATG 8 cut(s) 128, 430, 863, 872, 995, 1048, 1409, 1508
HspAI GCGC 1 cut(s) 1297
KpnI GGTACC 1 cut(s) 236
LmnI GCTCC 4 cut(s) 50, 359, 1631, 1908
Lsp1109I GCAGC 4 cut(s) 67, 637, 665, 1257
LweI GCATC 2 cut(s) 790, 804
MabI ACCWGGT 2 cut(s) 1276, 1781
MaeI CTAG 5 cut(s) 129, 285, 312, 444, 1026
MaeII ACGT 1 cut(s) 1256
MaeIII GTNAC 2 cut(s) 466, 944
MboII GAAGA 5 cut(s) 680, 988, 1018, 1049, 1709
MfeI CAATTG 3 cut(s) 519, 788, 821
MflI RGATCY 7 cut(s) 59, 721, 1086, 1133, 1601, 1849, 1921
MhlI GDGCHC 3 cut(s) 153, 246, 356
MlyI GAGTC 2 cut(s) 988, 1535
MmeI TCCRAC 3 cut(s) 1402, 1564, 1853
Mph1103I ATGCAT 1 cut(s) 874
MseI TTAA 9 cut(s) 117, 437, 525, 539, 614, 962, 1611, 1688, 1805
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 3 cut(s) 656, 848, 1671
MspI CCGG 2 cut(s) 167, 1742
MspR9I CCNGG 3 cut(s) 1278, 1743, 1783
MunI CAATTG 3 cut(s) 519, 788, 821
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 2 cut(s) 1278, 1783
MwoI GCNNNNNNNGC 5 cut(s) 89, 134, 377, 784, 1172
NciI CCSGG 1 cut(s) 1743
NheI GCTAGC 1 cut(s) 311
NlaIII CATG 8 cut(s) 128, 430, 863, 872, 995, 1048, 1409, 1508
NlaIV GGNNCC 3 cut(s) 213, 234, 1851
NmuCI GTSAC 2 cut(s) 466, 944
NsiI ATGCAT 1 cut(s) 874
NspI RCATGY 3 cut(s) 128, 872, 995
NspV TTCGAA 1 cut(s) 1948
PaeI GCATGC 1 cut(s) 872
PagI TCATGA 1 cut(s) 859
PctI GAATGC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 1030, 1596
PkrI GCNGC 5 cut(s) 82, 652, 655, 1272, 1384
PleI GAGTC 2 cut(s) 987, 1534
PpsI GAGTC 2 cut(s) 987, 1534
Psp124BI GAGCTC 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 1276, 1781
PspFI CCCAGC 1 cut(s) 1667
PspGI CCWGG 2 cut(s) 1276, 1781
PspN4I GGNNCC 3 cut(s) 213, 234, 1851
PspPI GGNCC 2 cut(s) 877, 1779
PstI CTGCAG 2 cut(s) 382, 655
PstNI CAGNNNCTG 1 cut(s) 1115
PsuI RGATCY 7 cut(s) 59, 721, 1086, 1133, 1601, 1849, 1921
PvuII CAGCTG 3 cut(s) 656, 848, 1671
RsaI GTAC 4 cut(s) 234, 376, 606, 1796
RsaNI GTAC 4 cut(s) 233, 375, 605, 1795
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 356
SaqAI TTAA 9 cut(s) 117, 437, 525, 539, 614, 962, 1611, 1688, 1805
SatI GCNGC 5 cut(s) 81, 651, 654, 1271, 1383
Sau96I GGNCC 2 cut(s) 877, 1779
SchI GAGTC 2 cut(s) 988, 1535
ScrFI CCNGG 3 cut(s) 1278, 1743, 1783
SduI GDGCHC 3 cut(s) 153, 246, 356
SexAI ACCWGGT 2 cut(s) 1276, 1781
SfaNI GCATC 2 cut(s) 790, 804
SfcI CTRYAG 3 cut(s) 378, 651, 1307
SfuI TTCGAA 1 cut(s) 1948
SinI GGWCC 2 cut(s) 877, 1779
SmiMI CAYNNNNRTG 1 cut(s) 29
SphI GCATGC 1 cut(s) 872
SsiI CCGC 1 cut(s) 1383
SspI AATATT 1 cut(s) 1192
SspMI CTAG 5 cut(s) 129, 285, 312, 444, 1026
SstI GAGCTC 1 cut(s) 356
StyD4I CCNGG 3 cut(s) 1276, 1741, 1781
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 5 cut(s) 67, 100, 1311, 1327, 1693
TaiI ACGT 1 cut(s) 1259
TaqI TCGA 5 cut(s) 53, 620, 1902, 1933, 1948
TaqII GACCGA 3 cut(s) 894, 1212, 1490
TauI GCSGC 1 cut(s) 1385
TfiI GAWTC 2 cut(s) 1030, 1596
Tru1I TTAA 9 cut(s) 117, 437, 525, 539, 614, 962, 1611, 1688, 1805
Tru9I TTAA 9 cut(s) 117, 437, 525, 539, 614, 962, 1611, 1688, 1805
TscAI CASTG 6 cut(s) 70, 103, 734, 1370, 1444, 1777
TseFI GTSAC 2 cut(s) 466, 944
TseI GCWGC 4 cut(s) 80, 650, 653, 1270
Tsp45I GTSAC 2 cut(s) 466, 944
TspDTI ATGAA 7 cut(s) 13, 17, 648, 1107, 1466, 1547, 1637
TspGWI ACGGA 2 cut(s) 1665, 1867
TspRI CASTG 6 cut(s) 70, 103, 734, 1370, 1444, 1777
VpaK11BI GGWCC 2 cut(s) 877, 1779
XagI CCTNNNNNAGG 2 cut(s) 554, 1128
XapI RAATTY 6 cut(s) 433, 486, 535, 610, 1000, 1763
XbaI TCTAGA 1 cut(s) 284
XceI RCATGY 3 cut(s) 128, 872, 995
XcmI CCANNNNNNNNNTGG 1 cut(s) 1580
XmiI GTMKAC 1 cut(s) 842
XspI CTAG 5 cut(s) 129, 285, 312, 444, 1026
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.