Rh6AG113700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000458
Physical Location & Seq
Forward (+)
17027874 .. 17028065
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG113700.1

Sequence Viewer

Length: 192 bp
ATGGAGAGGATGGTAGGGGTGGGATTGGAGCGCGTGGGCCTGGGAGGCGGAGAAGCCATGGACGACGCGTGTGCATGTGTACAGGAGGTTGGTAGGGTGAGGGGAAGGAAGGAGGGAGTGAAGTATGAAGGTGCACCAGACTACCAGCGGAGGTGGAAGGAGAATAGAGAAGGCTTGGAATATTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.07

Weight (kDa)

5.14

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 33, 68
AciI CCGC 2 cut(s) 48, 148
AfaI GTAC 1 cut(s) 81
AflIII ACRYGT 1 cut(s) 66
AjnI CCWGG 1 cut(s) 39
Alw21I GWGCWC 1 cut(s) 136
Alw44I GTGCAC 1 cut(s) 132
AoxI GGCC 1 cut(s) 37
ApaLI GTGCAC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 109
BaeGI GKGCMC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 136
BccI CCATC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 1 cut(s) 41
BglI GCCNNNNNGGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 40, 57
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 40, 57
BseGI GGATG 1 cut(s) 15
BseSI GKGCMC 1 cut(s) 136
Bsh1236I CGCG 2 cut(s) 33, 68
BshFI GGCC 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 136
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 2 cut(s) 48, 148
BspANI GGCC 1 cut(s) 39
BspFNI CGCG 2 cut(s) 33, 68
BsrGI TGTACA 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 40, 57
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 79
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 2 cut(s) 33, 68
BstHHI GCGC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 136
BstUI CGCG 2 cut(s) 33, 68
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 15
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 80
CviAII CATG 2 cut(s) 58, 75
CviJI RGCY 3 cut(s) 39, 56, 174
CviKI_1 RGCY 3 cut(s) 39, 56, 174
CviQI GTAC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 2 cut(s) 61, 78
FaiI YATR 3 cut(s) 59, 76, 126
FatI CATG 2 cut(s) 57, 74
FokI GGATG 1 cut(s) 22
GlaI GCGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 39
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 33
Hin1II CATG 2 cut(s) 61, 78
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 80, 134
Hpy8I GTNNAC 2 cut(s) 80, 134
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 5 cut(s) 99, 103, 122, 151, 164
HpyCH4V TGCA 2 cut(s) 74, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 61, 78
HspAI GCGC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 5 cut(s) 26, 53, 68, 150, 158
MhlI GDGCHC 1 cut(s) 136
MluI ACGCGT 1 cut(s) 66
MnlI CCTC 5 cut(s) 38, 79, 93, 106, 144
MseI TTAA 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 2 cut(s) 33, 68
MwoI GCNNNNNNNGC 1 cut(s) 45
NcoI CCATGG 1 cut(s) 57
NlaIII CATG 2 cut(s) 61, 78
NspI RCATGY 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspPI GGNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 136
SetI ASST 3 cut(s) 90, 133, 155
SsiI CCGC 2 cut(s) 48, 148
SspI AATATT 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 57
TatI WGTACW 1 cut(s) 79
Tru1I TTAA 1 cut(s) 190
Tru9I TTAA 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 141
VneI GTGCAC 1 cut(s) 132
XceI RCATGY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.