Rh7AG458500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000458
Physical Location & Seq
Reverse (-)
63057408 .. 63067383
9976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG458500.1

Sequence Viewer

Length: 690 bp
ATGGAAGCAGAACAAAGTGGTTGCGCTATTGATTTAGAGAAGAAGAAAAAGTTAAATGTAGCATACAAAGTTCAAGGTACTCCTCATGCAGTGGAGCAAGGAGAAGTTCACACCTTTCAGACCATCGCCCCAGCTAACCAAAGTGCAGCTGTCAATATAAAGGATCAAAGTCTGAATGTTAAGCCCCAATCTTATGGTGAAGGCAGTGCGGAAGCAGAAGAAAATGACCCTGAGAAGTTAGAATTCGAAGAAGATGATGATGAATCAGATCAATCTAAAGATTCAAATAAAAGTTCTCCTCGCGATGATGAAGAATCAGATCAATCTCAAGATTCCGATAAAAGTTCTCGTCGCCGGAAACGTGGTCGTACCAAAAAAAGCGAGCCTAAAACAGATCAATCTCAAGATTCTGAAAAAAGTTCTCGTCGCCGGAAACGTGGTTCCAGTGGTCGTACCCAAAAAAGCGAGCCTAAAACAGGTCAGTCTAAAGATTCAGATAACAGTTCTCGTCACCGTGATCGTAAAGGTGAACTGGAATCGCAAGAAGATAATGATAAATCAAATGGTTCAGATAAAGATTCTCGCCGTGGCGATAAACGTGAGTCTCGTCGTCATAGTCGTGCCCGAGAAAACAAAGACAAAGTGCCTTCCACGTCCAACCGTGATACGGACGACCGCAAAACTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.85

Weight (kDa)

6.49

Isoelectric Point (pI)

80.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 303
AciI CCGC 2 cut(s) 209, 676
AclWI GGATC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 3 cut(s) 79, 370, 454
AfiI CCNNNNNNNGG 2 cut(s) 476, 667
AgsI TTSAA 2 cut(s) 74, 285
AjiI CACGTC 1 cut(s) 654
AloI GAACNNNNNNTCC 2 cut(s) 424, 456
AluBI AGCT 2 cut(s) 134, 149
AluI AGCT 2 cut(s) 134, 149
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 624
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 242
AspLEI GCGC 1 cut(s) 26
AsuHPI GGTGA 3 cut(s) 209, 503, 539
AsuII TTCGAA 1 cut(s) 246
AvaI CYCGRG 1 cut(s) 624
BaeGI GKGCMC 1 cut(s) 625
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 609
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 624
BmgBI CACGTC 1 cut(s) 654
BmiI GGNNCC 1 cut(s) 442
Bpu14I TTCGAA 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 312, 387
BsaJI CCNNGG 1 cut(s) 586
Bsc4I CCNNNNNNNGG 2 cut(s) 476, 667
Bse1I ACTGG 2 cut(s) 444, 537
BseDI CCNNGG 1 cut(s) 586
BseLI CCNNNNNNNGG 2 cut(s) 476, 667
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 444, 537
BseRI GAGGAG 2 cut(s) 72, 288
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 130
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 676
BsiEI CGRYCG 1 cut(s) 676
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 2 cut(s) 355, 430
BslI CCNNNNNNNGG 2 cut(s) 476, 667
BsmAI GTCTC 1 cut(s) 609
BsoBI CYCGRG 1 cut(s) 624
Bsp119I TTCGAA 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 5 cut(s) 163, 268, 319, 394, 517
Bsp68I TCGCGA 1 cut(s) 303
BspACI CCGC 2 cut(s) 209, 676
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 246
BsrI ACTGG 2 cut(s) 444, 537
BssECI CCNNGG 1 cut(s) 586
BssMI GATC 5 cut(s) 163, 268, 319, 394, 517
Bst4CI ACNGT 3 cut(s) 503, 515, 662
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 383, 467
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 586
BstENI CCTNNNNNAGG 1 cut(s) 474
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 5 cut(s) 166, 271, 322, 397, 520
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 5 cut(s) 163, 268, 319, 394, 517
BstMCI CGRYCG 1 cut(s) 676
BstSLI GKGCMC 1 cut(s) 625
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 586
BtgZI GCGATG 2 cut(s) 109, 318
BtrI CACGTC 1 cut(s) 654
BtsI GCAGTG 2 cut(s) 96, 211
BtsIMutI CAGTG 3 cut(s) 96, 211, 451
BtuMI TCGCGA 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 383, 467
CfoI GCGC 1 cut(s) 26
Csp6I GTAC 3 cut(s) 78, 369, 453
CviAII CATG 1 cut(s) 86
CviJI RGCY 5 cut(s) 134, 149, 184, 385, 469
CviKI_1 RGCY 5 cut(s) 134, 149, 184, 385, 469
CviQI GTAC 3 cut(s) 78, 369, 453
DdeI CTNAG 1 cut(s) 231
DpnI GATC 5 cut(s) 165, 270, 321, 396, 519
DpnII GATC 5 cut(s) 163, 268, 319, 394, 517
Eco88I CYCGRG 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 242
FaeI CATG 1 cut(s) 89
FaiI YATR 6 cut(s) 64, 87, 158, 195, 615, 688
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GlaI GCGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 147
GsaI CCCAGC 1 cut(s) 134
HapII CCGG 2 cut(s) 355, 430
HhaI GCGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 9 cut(s) 263, 281, 314, 332, 407, 491, 536, 578, 602
HpaII CCGG 2 cut(s) 355, 430
HphI GGTGA 3 cut(s) 209, 503, 539
Hpy166II GTNNAC 2 cut(s) 109, 530
Hpy188I TCNGA 8 cut(s) 120, 174, 268, 319, 337, 412, 496, 571
Hpy188III TCNNGA 3 cut(s) 302, 329, 404
Hpy8I GTNNAC 2 cut(s) 109, 530
Hpy99I CGWCG 3 cut(s) 354, 429, 612
HpyAV CCTTC 2 cut(s) 194, 657
HpyCH4III ACNGT 3 cut(s) 503, 515, 662
HpyCH4IV ACGT 4 cut(s) 361, 436, 598, 653
HpyCH4V TGCA 2 cut(s) 89, 146
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 4 cut(s) 361, 436, 598, 653
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 5 cut(s) 163, 268, 319, 394, 517
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 144, 243, 368, 443, 457, 462, 518
Lsp1109I GCAGC 1 cut(s) 158
MaeII ACGT 4 cut(s) 361, 436, 598, 653
MaeIII GTNAC 1 cut(s) 509
MalI GATC 5 cut(s) 165, 270, 321, 396, 519
MboI GATC 5 cut(s) 163, 268, 319, 394, 517
MboII GAAGA 7 cut(s) 52, 55, 230, 260, 263, 323, 557
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 1 cut(s) 242
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 2 cut(s) 93, 309
MseI TTAA 2 cut(s) 53, 180
MslI CAYNNNNRTG 1 cut(s) 618
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 355, 430
MvnI CGCG 1 cut(s) 303
NdeII GATC 5 cut(s) 163, 268, 319, 394, 517
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 509
NruI TCGCGA 1 cut(s) 303
NspV TTCGAA 1 cut(s) 246
PcsI WCGNNNNNNNCGW 4 cut(s) 358, 433, 604, 616
PfeI GAWTC 8 cut(s) 263, 281, 314, 332, 407, 491, 536, 578
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 442
PvuII CAGCTG 1 cut(s) 149
RruI TCGCGA 1 cut(s) 303
RsaI GTAC 3 cut(s) 79, 370, 454
RsaNI GTAC 3 cut(s) 78, 369, 453
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 2 cut(s) 53, 180
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 5 cut(s) 163, 268, 319, 394, 517
SchI GAGTC 1 cut(s) 611
SduI GDGCHC 1 cut(s) 625
SfuI TTCGAA 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 2 cut(s) 327, 402
SmoI CTYRAG 2 cut(s) 327, 402
Sse9I AATT 1 cut(s) 242
SsiI CCGC 2 cut(s) 209, 676
TaaI ACNGT 3 cut(s) 503, 515, 662
TaiI ACGT 4 cut(s) 364, 439, 601, 656
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 242
TfiI GAWTC 8 cut(s) 263, 281, 314, 332, 407, 491, 536, 578
Tru1I TTAA 2 cut(s) 53, 180
Tru9I TTAA 2 cut(s) 53, 180
TscAI CASTG 3 cut(s) 96, 211, 451
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 3 cut(s) 276, 324, 675
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 3 cut(s) 96, 211, 451
XagI CCTNNNNNAGG 1 cut(s) 474
XapI RAATTY 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.