Rroxscaffold_1G00039160

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000458
Physical Location & Seq
Reverse (-)
56715820 .. 56716275
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039160.1

Sequence Viewer

Length: 309 bp
ATGGACGGCGCGTGTGCATGTATAGAGGAGGTTGGTGGGGTGAGGGGAAGGAGGGAGGGAGCAAAGTATGAAGGTGTACCGGACTACCAGCGGCGGGCATACACATCCTTGGGCACCCCTCTTTACAATCCACCGGCACCTTCACCCCAAATCTCGACGCATCACCATAAAGACGACCGCACAGTTTACATCGCCACCTTCGTCTCATTGGGCGGTGTTTTCTTCCTCGCATTCCTTGCACTTGGTCTATTCTGCTTGGCTAAGAAGAAGAAGAAAAGGGCAACATATGCTCCTCCAGCTGCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.05

Weight (kDa)

9.44

Isoelectric Point (pI)

63.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 113, 136
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 91, 94, 178, 213
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 94, 302
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 208
AlwNI CAGNNNCTG 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 11
AsuHPI GGTGA 3 cut(s) 52, 135, 155
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 113, 136
BbvI GCAGC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 208
BisI GCNGC 2 cut(s) 92, 300
BlsI GCNGC 2 cut(s) 93, 301
BmiI GGNNCC 2 cut(s) 115, 138
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 302
Bse118I RCCGGY 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 2 cut(s) 94, 302
BseRI GAGGAG 2 cut(s) 41, 282
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 178
BshNI GGYRCC 2 cut(s) 113, 136
BsiEI CGRYCG 1 cut(s) 178
BsiSI CCGG 2 cut(s) 80, 134
BslI CCNNNNNNNGG 2 cut(s) 94, 302
BsmAI GTCTC 1 cut(s) 208
BsmBI CGTCTC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 116
BspACI CCGC 4 cut(s) 91, 94, 178, 213
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 115, 138
BspT107I GGYRCC 2 cut(s) 113, 136
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 184
BstAPI GCANNNNNTGC 2 cut(s) 236, 287
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 104
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 208
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 3 cut(s) 236, 287, 296
BstNSI RCATGY 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 133
CseI GACGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 77
CviAII CATG 1 cut(s) 18
CviJI RGCY 2 cut(s) 260, 299
CviKI_1 RGCY 2 cut(s) 260, 299
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 1 cut(s) 21
FaiI YATR 7 cut(s) 19, 23, 69, 100, 168, 286, 288
FatI CATG 1 cut(s) 17
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 92, 300
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 2 cut(s) 92, 300
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 92, 300
GsuI CTGGAG 1 cut(s) 279
HapII CCGG 2 cut(s) 80, 134
HgaI GACGC 1 cut(s) 166
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HpaII CCGG 2 cut(s) 80, 134
HphI GGTGA 3 cut(s) 52, 135, 155
Hpy166II GTNNAC 2 cut(s) 77, 187
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 77, 187
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 4 cut(s) 42, 65, 150, 208
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 17, 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 287, 296
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 59, 295
LpnPI CCDG 4 cut(s) 93, 101, 147, 288
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 169
MboII GAAGA 4 cut(s) 214, 277, 280, 283
MhlI GDGCHC 1 cut(s) 116
MnlI CCTC 8 cut(s) 19, 22, 36, 45, 49, 129, 236, 303
MseI TTAA 1 cut(s) 307
MspA1I CMGCKG 2 cut(s) 91, 299
MspI CCGG 2 cut(s) 80, 134
Mva1269I GAATGC 1 cut(s) 230
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 236, 287, 296
NdeI CATATG 1 cut(s) 286
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 2 cut(s) 115, 138
NspI RCATGY 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 2 cut(s) 93, 301
PspN4I GGNNCC 2 cut(s) 115, 138
PstNI CAGNNNCTG 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 307
SatI GCNGC 2 cut(s) 92, 300
SduI GDGCHC 1 cut(s) 116
SetI ASST 5 cut(s) 33, 76, 142, 200, 301
SfaNI GCATC 1 cut(s) 169
SsiI CCGC 4 cut(s) 91, 94, 178, 213
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 155
TauI GCSGC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 307
Tru9I TTAA 1 cut(s) 307
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 302
XceI RCATGY 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.