FvH4_5g36100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000458
Physical Location & Seq
Reverse (-)
26468968 .. 26469738
771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36100.t1

Sequence Viewer

Length: 639 bp
ATGAAAAAGTCAAGCGCGGCATACGGAGGTCAAGGTCAAGGTGTTTCTCATGCAGAGGAGCAAGGAGAAGCTCATACCTTACAGAGCATCCCCGCAGCTAGCCAGAGTGTAGCTGTCAACATAGATAATCAAAATCCGAATGTTGAACCCAAACCTTATGGAGGTGGTGATGAGGAAGCACAAGAAGATGATCCAAATGAAAGTCCTAGTCGTCGTAAACGTCGTGTTCGTCGTCGTACTAAAAGACAAGGTCAAAGAGACTCCAATCATGGTGACAACATAATTGCTGCAATTGGTGCTGGTTCAAATGAGGCATTAGAATCCGAGGACGATGATGAAGAATCAGATCAATCTAAAGATTCAGATAAAAGTTCTCGTCGCCGGCGACGAGGTTCTAATGGTCGCACCAAAAAACGAGAGCCTGAAAGAAATCAGAATCGTGATCGTAATGCTGAACAAAGTGTGCCTGTCACAATTGATGATGATGAAGATGATCCAGGTGTGGAACTAGAATCACAAGAAGATGACGATAAATCAAATGGTTCTGATAAAGATTCTCGTCGTCGAAATAAACGTGATTCTGGCCGTCGTGGCCGTGCTAGAGAAAACAAAGGCAAAGAGCGTTCAACTGACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.64

Weight (kDa)

5.48

Isoelectric Point (pI)

94.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 17, 93
AclWI GGATC 2 cut(s) 185, 488
AcoI YGGCCR 2 cut(s) 583, 592
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 3 cut(s) 146, 306, 627
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 3 cut(s) 71, 98, 113
AluI AGCT 3 cut(s) 71, 98, 113
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 2 cut(s) 185, 488
AoxI GGCC 2 cut(s) 583, 592
ApeKI GCWGC 2 cut(s) 95, 287
AspLEI GCGC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 179, 284
AsuNHI GCTAGC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 107, 274
BceAI ACGGC 2 cut(s) 570, 579
BciT130I CCWGG 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 4 cut(s) 99, 207, 509, 600
BglI GCCNNNNNGGC 1 cut(s) 591
BisI GCNGC 3 cut(s) 18, 96, 288
BlsI GCNGC 3 cut(s) 19, 97, 289
Bme1390I CCNGG 1 cut(s) 498
BmrFI CCNGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 96
BmtI GCTAGC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 381
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 107, 274
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 585, 594
BsiSI CCGG 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 2 cut(s) 585, 594
Bsp143I GATC 4 cut(s) 190, 346, 442, 493
BspACI CCGC 2 cut(s) 17, 93
BspANI GGCC 2 cut(s) 585, 594
BspFNI CGCG 1 cut(s) 17
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 2 cut(s) 185, 488
BsrFI RCCGGY 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 4 cut(s) 190, 346, 442, 493
Bst2UI CCWGG 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 100, 383
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 4 cut(s) 193, 349, 445, 496
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 4 cut(s) 190, 346, 442, 493
BstMWI GCNNNNNNNGC 2 cut(s) 296, 591
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 1 cut(s) 496
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 107, 274
BsuRI GGCC 2 cut(s) 585, 594
BtsCI GGATG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 100, 383
CfoI GCGC 1 cut(s) 17
Cfr10I RCCGGY 1 cut(s) 381
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 50, 269
CviJI RGCY 7 cut(s) 71, 98, 102, 113, 421, 585, 594
CviKI_1 RGCY 7 cut(s) 71, 98, 102, 113, 421, 585, 594
CviQI GTAC 1 cut(s) 237
DpnI GATC 4 cut(s) 192, 348, 444, 495
DpnII GATC 4 cut(s) 190, 346, 442, 493
EaeI YGGCCR 2 cut(s) 583, 592
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 496
FaeI CATG 2 cut(s) 53, 272
FaiI YATR 7 cut(s) 22, 51, 75, 122, 159, 270, 281
FatI CATG 2 cut(s) 49, 268
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 18, 96, 288
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 18, 96, 288
FspBI CTAG 4 cut(s) 99, 207, 509, 600
GlaI GCGC 1 cut(s) 16
GluI GCNGC 3 cut(s) 18, 96, 288
HaeIII GGCC 2 cut(s) 585, 594
HapII CCGG 1 cut(s) 382
HhaI GCGC 1 cut(s) 17
Hin1II CATG 2 cut(s) 53, 272
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 8 cut(s) 260, 320, 341, 359, 436, 512, 554, 578
HpaII CCGG 1 cut(s) 382
HphI GGTGA 2 cut(s) 179, 284
Hpy166II GTNNAC 2 cut(s) 118, 218
Hpy188I TCNGA 6 cut(s) 138, 325, 346, 364, 435, 547
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 2 cut(s) 118, 218
Hpy99I CGWCG 9 cut(s) 216, 225, 234, 237, 381, 390, 564, 567, 591
HpyCH4IV ACGT 2 cut(s) 220, 574
HpyCH4V TGCA 2 cut(s) 53, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 591
HpySE526I ACGT 2 cut(s) 220, 574
Hsp92II CATG 2 cut(s) 53, 272
HspAI GCGC 1 cut(s) 15
KroI GCCGGC 1 cut(s) 381
KroNI GCCGGC 1 cut(s) 383
Kzo9I GATC 4 cut(s) 190, 346, 442, 493
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 8 cut(s) 116, 285, 395, 435, 480, 483, 510, 567
Lsp1109I GCAGC 2 cut(s) 107, 274
LweI GCATC 1 cut(s) 96
MaeI CTAG 4 cut(s) 99, 207, 509, 600
MaeII ACGT 2 cut(s) 220, 574
MaeIII GTNAC 2 cut(s) 272, 469
MalI GATC 4 cut(s) 192, 348, 444, 495
MboI GATC 4 cut(s) 190, 346, 442, 493
MboII GAAGA 4 cut(s) 197, 350, 500, 533
MfeI CAATTG 2 cut(s) 291, 474
MluCI AATT 3 cut(s) 282, 291, 474
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 7 cut(s) 20, 49, 155, 166, 304, 319, 383
MreI CGCCGGCG 1 cut(s) 381
MroNI GCCGGC 1 cut(s) 381
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 1 cut(s) 498
MunI CAATTG 2 cut(s) 291, 474
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 296, 591
NaeI GCCGGC 1 cut(s) 383
NdeII GATC 4 cut(s) 190, 346, 442, 493
NgoMIV GCCGGC 1 cut(s) 381
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 2 cut(s) 53, 272
NmuCI GTSAC 2 cut(s) 272, 469
PcsI WCGNNNNNNNCGW 7 cut(s) 217, 220, 226, 229, 382, 385, 571
PdiI GCCGGC 1 cut(s) 383
PfeI GAWTC 7 cut(s) 320, 341, 359, 436, 512, 554, 578
PflFI GACNNNGTC 1 cut(s) 249
PkrI GCNGC 3 cut(s) 19, 97, 289
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PsyI GACNNNGTC 1 cut(s) 249
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SatI GCNGC 3 cut(s) 18, 96, 288
Sau3AI GATC 4 cut(s) 190, 346, 442, 493
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 498
SfaNI GCATC 1 cut(s) 96
SfiI GGCCNNNNNGGCC 1 cut(s) 591
SgrAI CRCCGGYG 1 cut(s) 381
Sse9I AATT 3 cut(s) 282, 291, 474
SsiI CCGC 2 cut(s) 17, 93
SspMI CTAG 4 cut(s) 99, 207, 509, 600
StyD4I CCNGG 1 cut(s) 496
TaiI ACGT 2 cut(s) 223, 577
TaqI TCGA 1 cut(s) 565
TasI AATT 3 cut(s) 282, 291, 474
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 7 cut(s) 320, 341, 359, 436, 512, 554, 578
TseFI GTSAC 2 cut(s) 272, 469
TseI GCWGC 2 cut(s) 95, 287
Tsp45I GTSAC 2 cut(s) 272, 469
TspDTI ATGAA 4 cut(s) 17, 213, 351, 501
TspGWI ACGGA 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 159
XspI CTAG 4 cut(s) 99, 207, 509, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.