Rh7AG464500

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000458
Physical Location & Seq
Reverse (-)
64078099 .. 64079655
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG464500.1

Sequence Viewer

Length: 1242 bp
ATGTTGCCACCTTCACACCCACCACCTTCATTGCCACCTCCACCTTCAGTGCAGCCACCAAGTCCACCACCTTCACCTTTACCACCCGCACTAACCCCGCCTGCAGTGCCGCCACCATCAAGTCCACCACCTCCGGTGCAGCCACCATCAAGTCCACCACCTCCGGTGCCGCCACCAGCAAGTCCCCCACCTTCATTGCCACCGCCATTAAGTCCACCACTTACACCATTACCACCTCCTCATCCCGCTCCTTCAGTTCCACCACCATCACATCCACCACTTTCACCATTGTCACCGTCACCATCACCACCTACACTGCCACCATCATACACACCACCACCTTCTCTGTTGCCGCCATCATCCTCACCCAAGTTTCCTCCGATACTCACCCCAGAGCCACCAATTTGCCAGTGTGTATGCCCAGCACCAAGTCCTTATTATAATTCAATTGCCCCATCACCGCAAAGTTCACCATCTCATAGCCATCGCACTGTTTATCTTGCCACTTTTGTCTCTCTTGGTGGATTGTTCTTTCTTGCATTCCTTGCAATTGGTCTCTTTTGCTTGCATAAGAAGAAGAAAAAGTCAAGGGCAGCATACGGAGATCAAGGTGTTTCTCATGCAGAGGAGCAAGGAGAAGTTCACACCTTTCAGAGCATCCCCACAGCTAACCAAAGTGTAGCTGTCAATATAGATGATCAAAATCCGAATGTTGAACCGAAATCTTATGGTGACGGCGGTGAGGAAGGAGAAGAAAATGATCCTGACAAAAGTCCTAGTCGTCGTAAACGTCCTATTCGTCGTCGTACTAGAGCACAAGGAAAAAGAGACTCCAATCATGGTGACAACATAATTGCTGCAATTGGTGCCGATTCAAATGAGGAATTAGACTCCGAAGATGATGATGAAGAATCAGATCAACCTAAAGATTCAGACAAAAGTTCTCGTCGCCGGAAACGTGGTTCTAGTGGTCGCACCCAAAAAAGAGAGCCTAAAACAAATCGGAACCGTGATCATAATGGTGACCAAAGTGTGTCTGTCACAATTGATGATGATGATGATGATGAAGATCCAGATGTGGAACTGGAATCGCAAGAAGATGACAATAAATCAAATGGTTCAGATAAAGATTCGCGTCGTCGTGATAAACGTGAGTCTGGTCGACGTAGTCGTACGCGAGGAAGCAAACCCAAAGAGCCTTCCACGTCCAACCGTGATACCGATGACCGCAAAACTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

413

Amino Acids

44.43

Weight (kDa)

5.97

Isoelectric Point (pI)

104.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 166, 866
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 1162
AccII CGCG 2 cut(s) 1135, 1177
AclWI GGATC 2 cut(s) 755, 1064
AcuI CTGAAG 2 cut(s) 30, 237
AfaI GTAC 2 cut(s) 808, 1174
AgsI TTSAA 3 cut(s) 447, 716, 876
AjiI CACGTC 1 cut(s) 1206
AloI GAACNNNNNNTCC 2 cut(s) 946, 978
AluBI AGCT 2 cut(s) 668, 683
AluI AGCT 2 cut(s) 668, 683
Alw21I GWGCWC 1 cut(s) 817
Alw26I GTCTC 3 cut(s) 517, 560, 822
AlwI GGATC 2 cut(s) 755, 1064
ApeKI GCWGC 4 cut(s) 52, 139, 593, 857
BanI GGYRCC 2 cut(s) 166, 866
Bbv12I GWGCWC 1 cut(s) 817
BbvI GCAGC 4 cut(s) 64, 151, 605, 844
BccI CCATC 9 cut(s) 124, 154, 274, 310, 331, 364, 463, 481, 492
BceAI ACGGC 1 cut(s) 751
BclI TGATCA 2 cut(s) 697, 1012
BcoDI GTCTC 3 cut(s) 517, 560, 822
BfaI CTAG 3 cut(s) 777, 810, 966
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 7 cut(s) 53, 110, 140, 170, 353, 594, 858
BlsI GCNGC 7 cut(s) 54, 111, 141, 171, 354, 595, 859
BmgBI CACGTC 1 cut(s) 1206
BmiI GGNNCC 3 cut(s) 168, 868, 1007
BmsI GCATC 1 cut(s) 666
BoxI GACNNNNGTC 1 cut(s) 771
BsaBI GATNNNNATC 2 cut(s) 702, 1068
BsaI GGTCTC 1 cut(s) 560
BsaWI WCCGGW 2 cut(s) 133, 163
Bse1I ACTGG 2 cut(s) 409, 1089
Bse3DI GCAATG 2 cut(s) 29, 194
Bse8I GATNNNNATC 2 cut(s) 702, 1068
BseGI GGATG 4 cut(s) 241, 271, 359, 657
BseJI GATNNNNATC 2 cut(s) 702, 1068
BseMI GCAATG 2 cut(s) 29, 194
BseNI ACTGG 2 cut(s) 409, 1089
BseRI GAGGAG 2 cut(s) 228, 641
BseXI GCAGC 4 cut(s) 64, 151, 605, 844
BseYI CCCAGC 1 cut(s) 421
BsgI GTGCAG 2 cut(s) 71, 158
Bsh1236I CGCG 2 cut(s) 1135, 1177
BshNI GGYRCC 2 cut(s) 166, 866
BsiHKAI GWGCWC 1 cut(s) 817
BsiSI CCGG 3 cut(s) 134, 164, 952
BsiWI CGTACG 1 cut(s) 1172
BslFI GGGAC 1 cut(s) 168
BsmAI GTCTC 3 cut(s) 517, 560, 822
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 539
Bso31I GGTCTC 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 817
Bsp143I GATC 6 cut(s) 604, 697, 760, 916, 1012, 1069
BspFNI CGCG 2 cut(s) 1135, 1177
BspLI GGNNCC 3 cut(s) 168, 868, 1007
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 2 cut(s) 755, 1064
BspT107I GGYRCC 2 cut(s) 166, 866
BspTNI GGTCTC 1 cut(s) 560
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 29, 194
BsrI ACTGG 2 cut(s) 409, 1089
BssMI GATC 6 cut(s) 604, 697, 760, 916, 1012, 1069
Bst4CI ACNGT 4 cut(s) 297, 493, 1010, 1214
BstAPI GCANNNNNTGC 2 cut(s) 545, 866
BstC8I GCNNGC 2 cut(s) 102, 566
BstEII GGTNACC 1 cut(s) 1022
BstF5I GGATG 4 cut(s) 241, 271, 359, 657
BstFNI CGCG 2 cut(s) 1135, 1177
BstKTI GATC 6 cut(s) 607, 700, 763, 919, 1015, 1072
BstMAI GTCTC 3 cut(s) 517, 560, 822
BstMBI GATC 6 cut(s) 604, 697, 760, 916, 1012, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 106, 545, 866
BstPAI GACNNNNGTC 1 cut(s) 771
BstPI GGTNACC 1 cut(s) 1022
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 2 cut(s) 1135, 1177
BstV1I GCAGC 4 cut(s) 64, 151, 605, 844
BstX2I RGATCY 1 cut(s) 1069
BstYI RGATCY 1 cut(s) 1069
BtgZI GCGATG 1 cut(s) 470
BtrI CACGTC 1 cut(s) 1206
BtsCI GGATG 4 cut(s) 241, 271, 359, 657
BtsI GCAGTG 2 cut(s) 111, 314
BtsIMutI CAGTG 5 cut(s) 54, 111, 314, 416, 489
Cac8I GCNNGC 2 cut(s) 102, 566
CseI GACGC 1 cut(s) 1124
Csp6I GTAC 2 cut(s) 807, 1173
CspCI CAANNNNNGTGG 4 cut(s) 12, 47, 177, 212
CviAII CATG 2 cut(s) 620, 839
CviJI RGCY 8 cut(s) 55, 142, 397, 483, 668, 683, 991, 1198
CviKI_1 RGCY 8 cut(s) 55, 142, 397, 483, 668, 683, 991, 1198
CviQI GTAC 2 cut(s) 807, 1173
DpnI GATC 6 cut(s) 606, 699, 762, 918, 1014, 1071
DpnII GATC 6 cut(s) 604, 697, 760, 916, 1012, 1069
Eco31I GGTCTC 1 cut(s) 560
Eco57I CTGAAG 2 cut(s) 30, 237
Eco91I GGTNACC 1 cut(s) 1022
EcoO65I GGTNACC 1 cut(s) 1022
FaeI CATG 2 cut(s) 623, 842
FaqI GGGAC 1 cut(s) 168
FatI CATG 2 cut(s) 619, 838
FauI CCCGC 3 cut(s) 94, 105, 253
FbaI TGATCA 2 cut(s) 697, 1012
FblI GTMKAC 1 cut(s) 1162
Fnu4HI GCNGC 7 cut(s) 53, 110, 140, 170, 353, 594, 858
FokI GGATG 4 cut(s) 228, 258, 346, 644
Fsp4HI GCNGC 7 cut(s) 53, 110, 140, 170, 353, 594, 858
FspBI CTAG 3 cut(s) 777, 810, 966
GluI GCNGC 7 cut(s) 53, 110, 140, 170, 353, 594, 858
GsaI CCCAGC 1 cut(s) 425
HapII CCGG 3 cut(s) 134, 164, 952
HgaI GACGC 1 cut(s) 1124
Hin1II CATG 2 cut(s) 623, 842
HincII GTYRAC 1 cut(s) 1163
HindII GTYRAC 1 cut(s) 1163
HinfI GANTC 8 cut(s) 830, 872, 890, 911, 929, 1088, 1130, 1154
HpaII CCGG 3 cut(s) 134, 164, 952
Hpy166II GTNNAC 8 cut(s) 65, 125, 155, 215, 470, 643, 788, 1163
Hpy188I TCNGA 8 cut(s) 381, 654, 708, 895, 916, 934, 1005, 1123
Hpy188III TCNNGA 3 cut(s) 764, 1073, 1142
Hpy8I GTNNAC 8 cut(s) 65, 125, 155, 215, 470, 643, 788, 1163
Hpy99I CGWCG 7 cut(s) 786, 804, 807, 951, 1140, 1143, 1167
HpyAV CCTTC 9 cut(s) 21, 36, 54, 81, 201, 261, 351, 740, 1209
HpyCH4III ACNGT 4 cut(s) 297, 493, 1010, 1214
HpyCH4IV ACGT 5 cut(s) 790, 958, 1150, 1165, 1205
HpyCH4V TGCA 8 cut(s) 52, 104, 139, 539, 548, 568, 623, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 545, 866
HpySE526I ACGT 5 cut(s) 790, 958, 1150, 1165, 1205
Hsp92II CATG 2 cut(s) 623, 842
Ksp22I TGATCA 2 cut(s) 697, 1012
Kzo9I GATC 6 cut(s) 604, 697, 760, 916, 1012, 1069
LmnI GCTCC 2 cut(s) 253, 628
Lsp1109I GCAGC 4 cut(s) 64, 151, 605, 844
LweI GCATC 1 cut(s) 666
MaeI CTAG 3 cut(s) 777, 810, 966
MaeII ACGT 5 cut(s) 790, 958, 1150, 1165, 1205
MaeIII GTNAC 6 cut(s) 291, 297, 731, 842, 1022, 1039
MalI GATC 6 cut(s) 606, 699, 762, 918, 1014, 1071
MbiI CCGCTC 1 cut(s) 248
MboI GATC 6 cut(s) 604, 697, 760, 916, 1012, 1069
MboII GAAGA 7 cut(s) 586, 589, 764, 908, 920, 1079, 1109
MfeI CAATTG 4 cut(s) 447, 549, 861, 1044
MflI RGATCY 1 cut(s) 1069
MhlI GDGCHC 1 cut(s) 817
MluCI AATT 8 cut(s) 402, 442, 447, 549, 852, 861, 884, 1044
MlyI GAGTC 3 cut(s) 824, 884, 1163
MmeI TCCRAC 1 cut(s) 1233
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 1020
MspI CCGG 3 cut(s) 134, 164, 952
MunI CAATTG 4 cut(s) 447, 549, 861, 1044
Mva1269I GAATGC 1 cut(s) 539
MvnI CGCG 2 cut(s) 1135, 1177
MwoI GCNNNNNNNGC 3 cut(s) 106, 545, 866
NdeII GATC 6 cut(s) 604, 697, 760, 916, 1012, 1069
NlaIII CATG 2 cut(s) 623, 842
NlaIV GGNNCC 3 cut(s) 168, 868, 1007
NmuCI GTSAC 6 cut(s) 291, 297, 731, 842, 1022, 1039
PcsI WCGNNNNNNNCGW 5 cut(s) 787, 796, 955, 1147, 1168
PctI GAATGC 1 cut(s) 539
PfeI GAWTC 5 cut(s) 872, 911, 929, 1088, 1130
Pfl23II CGTACG 1 cut(s) 1172
PflFI GACNNNGTC 1 cut(s) 1167
PkrI GCNGC 7 cut(s) 54, 111, 141, 171, 354, 595, 859
PleI GAGTC 3 cut(s) 824, 884, 1162
PpsI GAGTC 3 cut(s) 824, 884, 1162
PshAI GACNNNNGTC 1 cut(s) 771
PsiI TTATAA 1 cut(s) 441
PspEI GGTNACC 1 cut(s) 1022
PspFI CCCAGC 1 cut(s) 421
PspLI CGTACG 1 cut(s) 1172
PspN4I GGNNCC 3 cut(s) 168, 868, 1007
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 1069
PsyI GACNNNGTC 1 cut(s) 1167
RsaI GTAC 2 cut(s) 808, 1174
RsaNI GTAC 2 cut(s) 807, 1173
RseI CAYNNNNRTG 1 cut(s) 1020
SalI GTCGAC 1 cut(s) 1161
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 7 cut(s) 53, 110, 140, 170, 353, 594, 858
Sau3AI GATC 6 cut(s) 604, 697, 760, 916, 1012, 1069
SchI GAGTC 3 cut(s) 824, 884, 1163
SduI GDGCHC 1 cut(s) 817
SfaNI GCATC 1 cut(s) 666
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 1020
Sse9I AATT 8 cut(s) 402, 442, 447, 549, 852, 861, 884, 1044
SspMI CTAG 3 cut(s) 777, 810, 966
TaaI ACNGT 4 cut(s) 297, 493, 1010, 1214
TaiI ACGT 5 cut(s) 793, 961, 1153, 1168, 1208
TaqI TCGA 1 cut(s) 1162
TasI AATT 8 cut(s) 402, 442, 447, 549, 852, 861, 884, 1044
TauI GCSGC 3 cut(s) 112, 172, 355
TfiI GAWTC 5 cut(s) 872, 911, 929, 1088, 1130
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 5 cut(s) 54, 111, 321, 416, 496
TseFI GTSAC 6 cut(s) 291, 297, 731, 842, 1022, 1039
TseI GCWGC 4 cut(s) 52, 139, 593, 857
Tsp45I GTSAC 6 cut(s) 291, 297, 731, 842, 1022, 1039
TspDTI ATGAA 5 cut(s) 18, 183, 921, 1080, 1227
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 5 cut(s) 54, 111, 321, 416, 496
Tth111I GACNNNGTC 1 cut(s) 1167
XmiI GTMKAC 1 cut(s) 1162
XspI CTAG 3 cut(s) 777, 810, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.