Rmu_ssc0000321.1_g000001

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000321.1
OG0000458
Physical Location & Seq
Reverse (-)
332 .. 1735
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000321.1_g000001.1.cds

Sequence Viewer

Length: 974 bp
cattacatccaccaccttcaccgtcacctttaccacctactgtgtttccaccttcacacccaccaccttcattaccgccaccacgtccaccaccttcacctttatcccccatactaaccccacctccagtgccgccaccatcaagtccaccacctctagtgccactaccatcaagtccaccacctctagtgccaccaccatcaaatcccccacctttattgccaccgccattaagtccaccacctacaccattaccacctcctcatccatctcctttggttccaccaccatcacatccaccactttcaccattgtcaccgtcaccatcaccacctacactgccaccatcatacacaccaccaccttctctgccgccgccatcatcctcacccccgtttcctccgatactcaccccagagccaccactgacaccatctcatagccatcgccctgttcttcttgccacttttgtctctcttggtggattgttctttcttgcattccttgcaattggtctctattgcgtgcataagaagaagaaaaagttaactgtagcatacaatgttcaaggtgctcctcaagcagtggagcaaggagaagttcacacctctcagaccatcgccccagctaaccaaagtgtagctgtcaatataaatgatcaaagtctgaatgttaagccccaatcttatggtgaaggcagtgcggaagcagaagaaaatgaccctgaggatggtcgtacccaaaagaacgagcctaaaacagatcaatctaaagattcagctaacagttctcgtcaccgtgatcgtaaaggtgaactggaatcgcaagaagataatgataaatcaaatggtgcagataaggattctcgccgtcgcgataaacgtgagtctcgtcgtcgtagtcatgcgcgagaaaacaaagacaaagggccttccacgtccaaccgtgatacggacgaccgcaaaacttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

34.45

Weight (kDa)

8.93

Isoelectric Point (pI)

102.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 875, 909
AciI CCGC 7 cut(s) 76, 133, 226, 373, 376, 703, 960
AfaI GTAC 1 cut(s) 738
AfiI CCNNNNNNNGG 2 cut(s) 730, 951
AgsI TTSAA 1 cut(s) 568
AjiI CACGTC 2 cut(s) 85, 938
AluBI AGCT 3 cut(s) 628, 643, 781
AluI AGCT 3 cut(s) 628, 643, 781
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 3 cut(s) 477, 520, 893
AoxI GGCC 1 cut(s) 928
AspLEI GCGC 1 cut(s) 909
AspS9I GGNCC 1 cut(s) 928
AxyI CCTNAGG 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 576
BceAI ACGGC 1 cut(s) 854
BclI TGATCA 1 cut(s) 657
BcoDI GTCTC 3 cut(s) 477, 520, 893
BfaI CTAG 2 cut(s) 157, 187
BfmI CTRYAG 1 cut(s) 551
BisI GCNGC 3 cut(s) 133, 373, 376
BlsI GCNGC 3 cut(s) 134, 374, 377
BmgBI CACGTC 2 cut(s) 85, 938
BmgT120I GGNCC 1 cut(s) 928
BmiI GGNNCC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 520
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 2 cut(s) 730, 951
Bse1I ACTGG 2 cut(s) 127, 821
Bse21I CCTNAGG 1 cut(s) 725
BseGI GGATG 5 cut(s) 6, 264, 294, 382, 735
BseLI CCNNNNNNNGG 2 cut(s) 730, 951
BseMII CTCAG 2 cut(s) 625, 716
BseNI ACTGG 2 cut(s) 127, 821
BseRI GAGGAG 2 cut(s) 251, 566
BseYI CCCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 872
Bsh1236I CGCG 2 cut(s) 875, 909
Bsh1285I CGRYCG 1 cut(s) 960
BshFI GGCC 1 cut(s) 930
BsiEI CGRYCG 1 cut(s) 960
BsiHKAI GWGCWC 1 cut(s) 576
BslI CCNNNNNNNGG 2 cut(s) 730, 951
BsmAI GTCTC 3 cut(s) 477, 520, 893
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 1 cut(s) 930
Bso31I GGTCTC 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 3 cut(s) 657, 762, 801
Bsp68I TCGCGA 1 cut(s) 875
BspACI CCGC 7 cut(s) 76, 133, 226, 373, 376, 703, 960
BspANI GGCC 1 cut(s) 930
BspCNI CTCAG 2 cut(s) 624, 717
BspFNI CGCG 2 cut(s) 875, 909
BspLI GGNNCC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 520
BsrI ACTGG 2 cut(s) 127, 821
BssMI GATC 3 cut(s) 657, 762, 801
Bst4CI ACNGT 7 cut(s) 23, 42, 320, 552, 787, 799, 946
BstAPI GCANNNNNTGC 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 2 cut(s) 611, 725
BstF5I GGATG 5 cut(s) 6, 264, 294, 382, 735
BstFNI CGCG 2 cut(s) 875, 909
BstHHI GCGC 1 cut(s) 909
BstKTI GATC 3 cut(s) 660, 765, 804
BstMAI GTCTC 3 cut(s) 477, 520, 893
BstMBI GATC 3 cut(s) 657, 762, 801
BstMCI CGRYCG 1 cut(s) 960
BstMWI GCNNNNNNNGC 2 cut(s) 505, 580
BstSFI CTRYAG 1 cut(s) 551
BstUI CGCG 2 cut(s) 875, 909
BstXI CCANNNNNNTGG 1 cut(s) 688
Bsu36I CCTNAGG 1 cut(s) 725
BsuRI GGCC 1 cut(s) 930
BtgZI GCGATG 2 cut(s) 430, 603
BtrI CACGTC 2 cut(s) 85, 938
BtsCI GGATG 5 cut(s) 6, 264, 294, 382, 735
BtsI GCAGTG 3 cut(s) 337, 590, 705
BtsIMutI CAGTG 5 cut(s) 134, 337, 424, 590, 705
BtuMI TCGCGA 1 cut(s) 875
Cac8I GCNNGC 1 cut(s) 526
CfoI GCGC 1 cut(s) 909
Cfr13I GGNCC 1 cut(s) 928
Csp6I GTAC 1 cut(s) 737
CspCI CAANNNNNGTGG 2 cut(s) 200, 235
CviAII CATG 1 cut(s) 904
CviJI RGCY 8 cut(s) 420, 443, 628, 643, 678, 753, 781, 930
CviKI_1 RGCY 8 cut(s) 420, 443, 628, 643, 678, 753, 781, 930
CviQI GTAC 1 cut(s) 737
DdeI CTNAG 2 cut(s) 611, 725
DpnI GATC 3 cut(s) 659, 764, 803
DpnII GATC 3 cut(s) 657, 762, 801
Eco31I GGTCTC 1 cut(s) 520
Eco81I CCTNAGG 1 cut(s) 725
EcoO109I RGGNCCY 1 cut(s) 928
FaeI CATG 1 cut(s) 907
FaiI YATR 9 cut(s) 112, 351, 440, 530, 558, 652, 689, 905, 972
FatI CATG 1 cut(s) 903
FbaI TGATCA 1 cut(s) 657
Fnu4HI GCNGC 3 cut(s) 133, 373, 376
FokI GGATG 4 cut(s) 251, 281, 369, 742
Fsp4HI GCNGC 3 cut(s) 133, 373, 376
FspBI CTAG 2 cut(s) 157, 187
GlaI GCGC 1 cut(s) 908
GluI GCNGC 3 cut(s) 133, 373, 376
GsaI CCCAGC 1 cut(s) 628
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 930
HhaI GCGC 1 cut(s) 909
Hin1II CATG 1 cut(s) 907
Hin6I GCGC 1 cut(s) 907
HinP1I GCGC 1 cut(s) 907
HincII GTYRAC 1 cut(s) 548
HindII GTYRAC 1 cut(s) 548
HinfI GANTC 4 cut(s) 775, 820, 862, 886
HpaI GTTAAC 1 cut(s) 548
Hpy166II GTNNAC 7 cut(s) 88, 148, 178, 238, 548, 603, 814
Hpy188I TCNGA 3 cut(s) 404, 614, 668
Hpy188III TCNNGA 1 cut(s) 874
Hpy8I GTNNAC 7 cut(s) 88, 148, 178, 238, 548, 603, 814
Hpy99I CGWCG 3 cut(s) 875, 896, 899
HpyAV CCTTC 7 cut(s) 26, 62, 77, 104, 374, 688, 941
HpyCH4III ACNGT 7 cut(s) 23, 42, 320, 552, 787, 799, 946
HpyCH4IV ACGT 3 cut(s) 84, 882, 937
HpyCH4V TGCA 4 cut(s) 499, 508, 528, 853
HpyF10VI GCNNNNNNNGC 2 cut(s) 505, 580
HpyF3I CTNAG 2 cut(s) 611, 725
HpySE526I ACGT 3 cut(s) 84, 882, 937
Hsp92II CATG 1 cut(s) 907
HspAI GCGC 1 cut(s) 907
Ksp22I TGATCA 1 cut(s) 657
KspAI GTTAAC 1 cut(s) 548
Kzo9I GATC 3 cut(s) 657, 762, 801
LmnI GCTCC 2 cut(s) 579, 588
LpnPI CCDG 6 cut(s) 140, 428, 464, 638, 737, 802
MaeI CTAG 2 cut(s) 157, 187
MaeII ACGT 3 cut(s) 84, 882, 937
MaeIII GTNAC 4 cut(s) 23, 314, 320, 793
MalI GATC 3 cut(s) 659, 764, 803
MboI GATC 3 cut(s) 657, 762, 801
MboII GAAGA 5 cut(s) 448, 546, 549, 724, 841
MfeI CAATTG 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 1 cut(s) 509
MlyI GAGTC 1 cut(s) 895
MmeI TCCRAC 1 cut(s) 965
MseI TTAA 3 cut(s) 232, 547, 674
MunI CAATTG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 499
MvnI CGCG 2 cut(s) 875, 909
MwoI GCNNNNNNNGC 2 cut(s) 505, 580
NdeII GATC 3 cut(s) 657, 762, 801
NlaIII CATG 1 cut(s) 907
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 4 cut(s) 23, 314, 320, 793
NruI TCGCGA 1 cut(s) 875
PcsI WCGNNNNNNNCGW 2 cut(s) 879, 888
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 3 cut(s) 775, 820, 862
PkrI GCNGC 3 cut(s) 134, 374, 377
PleI GAGTC 1 cut(s) 894
PpsI GAGTC 1 cut(s) 894
PspFI CCCAGC 1 cut(s) 624
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 928
RruI TCGCGA 1 cut(s) 875
RsaI GTAC 1 cut(s) 738
RsaNI GTAC 1 cut(s) 737
SaqAI TTAA 3 cut(s) 232, 547, 674
SatI GCNGC 3 cut(s) 133, 373, 376
Sau3AI GATC 3 cut(s) 657, 762, 801
Sau96I GGNCC 1 cut(s) 928
SchI GAGTC 1 cut(s) 895
SduI GDGCHC 1 cut(s) 576
SfcI CTRYAG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
Sse9I AATT 1 cut(s) 509
SsiI CCGC 7 cut(s) 76, 133, 226, 373, 376, 703, 960
SspMI CTAG 2 cut(s) 157, 187
TaaI ACNGT 7 cut(s) 23, 42, 320, 552, 787, 799, 946
TaiI ACGT 3 cut(s) 87, 885, 940
TasI AATT 1 cut(s) 509
TauI GCSGC 3 cut(s) 135, 375, 378
TfiI GAWTC 3 cut(s) 775, 820, 862
Tru1I TTAA 3 cut(s) 232, 547, 674
Tru9I TTAA 3 cut(s) 232, 547, 674
TscAI CASTG 5 cut(s) 134, 344, 431, 590, 705
TseFI GTSAC 4 cut(s) 23, 314, 320, 793
Tsp45I GTSAC 4 cut(s) 23, 314, 320, 793
TspDTI ATGAA 2 cut(s) 59, 959
TspGWI ACGGA 1 cut(s) 967
TspRI CASTG 5 cut(s) 134, 344, 431, 590, 705
XspI CTAG 2 cut(s) 157, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.