Rroxscaffold_3G00223670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000458
Physical Location & Seq
Forward (+)
6797930 .. 6799513
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223670.1

Sequence Viewer

Length: 1491 bp
ATGGCCAAGGGTAAATTTCTACCTACAGAACTCCCTGTAGCAACCATGAGCTATCCCTACTACTCTCCTCCACCACCTTCACCACCTCTCCCTTGTGCTCCACCACCACCGTCTCCACCACCCCCATGTAACCCTGTAACCGCATCACCACCTCCACCTCCACCTCCACCACCTCATCACCATGGCCATCATCACCATCATCATCCAAAATCACCCCCGAAACATTACAATGCGCAACCACCTCCTCCTCCATCACCATCACCATCACCATCACCACCACCTCCCCATCACCATGACTATCCCAAGCCACCGCCTCTGTCATCTCCTCCTCCACCACCTCATCACCATGACTATCCTAAGCCACCATCTCCATCACCTCCACCGCCGCCACATCATCATCATCATCACTACCCTAAACCATCACCACCTCCTCCATCACCATCTCCTCCGCCACCGCATCACCATGACTATCCTAAACCTCCGCCACATTCTCCTTCACCACCTCACCACCATGACTACCCTAAACCTCCGCCACCCACTGCTTCACCACCACACCACCATGACTATCCTAAACCTCCGCCACCCACTGCATCACCACCACATCACCATGATTATCCACCGCCATCCTGGGCTACTCCTCCAGCTTCACCACCATCAGTTCCAGCACTGCCACCACCTCACGGCTCGGCTCCACCACCGCATGGTTATCATCACACCCCACCTACTGCCTTCCCACCACCACATTACCCTCCAAAATCATCACCACCAAAACCCAGCTATGAGGCGCCGCCTCCAAAGTCCGTATACCCACCAAAACCCAGTGAAGGTGCTCCACCACCCAAACCAGTATATCCACCAAAGCCGAGTAAGGGCGCACCACCCCCCAAGTCGTACCCACCAAAGCCAAGTAAGGGGGCGCCGCCACCAAAGTCCGTTTACCCACCAAAGCCCAGTAAGGGAGCTCCACCACCGAAATCTTCATATCCACCAAAGCCAAGCAAGGGAGCTCCTCCACCGAAGTCAGTAATATATCCACCAAAGCCAAGTAAGGGTGCGCCACCTCCAGGTTACAATGGACATTTTCCTCCACCTCCCACATACTACGGTGCTCCTCCTCCACCTTCCGGAGGCATCCCACCGTCCTCCAATGAACTGGCCCCACCTCCCGGCGGGAAAAATCACACCACTGTCATCGCCGTGTGTGTCTCACTAGGCGGTGCATTCTTCCTCGCATTCCTTCTGGTCGGTCTCTTTTGCTTCGCCAAGAAGAAGAAGAAGAGAGTGATGGTTCCCGCAGCCGTTCCTTGCGAACCCGAAGAAGAAGTCCATGAAACAATCATAGCAACAGGTGTTTACGGCGGCGGCGAAGCAAGTGCTGCTGCAGCCGGAGGAGGAGCAGGTTACGGGGGAGAAGGAGGGGGCCCACCACCCCATGAACCCGAGATAGTCGGGGCTGGTGGTGCTGGTTATGGTCATCATCCAAGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
No domains found.

Protein Analysis

496

Amino Acids

51.66

Weight (kDa)

9.4

Isoelectric Point (pI)

92.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 234
Acc36I ACCTGC 1 cut(s) 1388
AccB1I GGYRCC 2 cut(s) 784, 916
AccB7I CCANNNNNTGG 1 cut(s) 701
AccI GTMKAC 1 cut(s) 804
AccIII TCCGGA 1 cut(s) 1124
AcoI YGGCCR 2 cut(s) 3, 184
AcsI RAATTY 1 cut(s) 14
AcyI GRCGYC 2 cut(s) 785, 917
AfaI GTAC 1 cut(s) 893
AjnI CCWGG 2 cut(s) 626, 1063
AluBI AGCT 5 cut(s) 51, 644, 777, 962, 1007
AluI AGCT 5 cut(s) 51, 644, 777, 962, 1007
Alw21I GWGCWC 5 cut(s) 100, 832, 964, 1009, 1111
Alw26I GTCTC 3 cut(s) 117, 1210, 1253
Ama87I CYCGRG 1 cut(s) 1439
Aor13HI TCCGGA 1 cut(s) 1124
AoxI GGCC 4 cut(s) 3, 184, 1155, 1420
ApaI GGGCCC 1 cut(s) 1424
ApeKI GCWGC 4 cut(s) 1295, 1376, 1379, 1382
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 1308, 1340
AspLEI GCGC 5 cut(s) 235, 787, 875, 919, 1057
AspS9I GGNCC 3 cut(s) 1156, 1420, 1421
AsuC2I CCSGG 1 cut(s) 1167
AvaI CYCGRG 1 cut(s) 1439
BaeGI GKGCMC 1 cut(s) 1424
BalI TGGCCA 2 cut(s) 5, 186
BanI GGYRCC 2 cut(s) 784, 916
BanII GRGCYC 3 cut(s) 964, 1009, 1424
Bbv12I GWGCWC 5 cut(s) 100, 832, 964, 1009, 1111
BbvI GCAGC 4 cut(s) 1307, 1363, 1366, 1394
BceAI ACGGC 4 cut(s) 697, 1181, 1283, 1372
BcgI CGANNNNNNTGC 2 cut(s) 1355, 1389
BciT130I CCWGG 2 cut(s) 628, 1065
BcnI CCSGG 1 cut(s) 1167
BcoDI GTCTC 3 cut(s) 117, 1210, 1253
BfaI CTAG 1 cut(s) 1211
BfmI CTRYAG 3 cut(s) 24, 36, 1380
BfoI RGCGCY 2 cut(s) 788, 920
BfuAI ACCTGC 1 cut(s) 1388
BisI GCNGC 9 cut(s) 386, 788, 920, 1296, 1360, 1363, 1377, 1380, 1383
BlsI GCNGC 9 cut(s) 387, 789, 921, 1297, 1361, 1364, 1378, 1381, 1384
Bme1390I CCNGG 3 cut(s) 628, 1065, 1167
BmeT110I CYCGRG 1 cut(s) 1439
BmgT120I GGNCC 3 cut(s) 1156, 1420, 1421
BmiI GGNNCC 7 cut(s) 690, 786, 918, 1158, 1290, 1421, 1422
BmrFI CCNGG 3 cut(s) 628, 1065, 1167
BmrI ACTGGG 2 cut(s) 813, 945
BmsI GCATC 4 cut(s) 152, 466, 599, 1140
BmuI ACTGGG 2 cut(s) 813, 945
BpmI CTGGAG 2 cut(s) 624, 1047
Bpu10I CCTNAGC 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 1167
BsaHI GRCGYC 2 cut(s) 785, 917
BsaI GGTCTC 1 cut(s) 1253
BsaJI CCNNGG 3 cut(s) 6, 181, 627
BsaWI WCCGGW 1 cut(s) 1124
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bse1I ACTGG 4 cut(s) 819, 845, 951, 1158
BseAI TCCGGA 1 cut(s) 1124
BseBI CCWGG 2 cut(s) 628, 1065
BseDI CCNNGG 3 cut(s) 6, 181, 627
BseGI GGATG 4 cut(s) 202, 623, 1131, 1477
BseNI ACTGG 4 cut(s) 819, 845, 951, 1158
BseSI GKGCMC 1 cut(s) 1424
BseXI GCAGC 4 cut(s) 1307, 1363, 1366, 1394
BseYI CCCAGC 1 cut(s) 773
BshFI GGCC 4 cut(s) 5, 186, 1157, 1422
BshNI GGYRCC 2 cut(s) 784, 916
BsiHKAI GWGCWC 5 cut(s) 100, 832, 964, 1009, 1111
BsiHKCI CYCGRG 1 cut(s) 1439
BsiSI CCGG 3 cut(s) 1125, 1167, 1386
BsmAI GTCTC 3 cut(s) 117, 1210, 1253
BsmBI CGTCTC 1 cut(s) 117
BsmI GAATGC 2 cut(s) 1220, 1232
BsnI GGCC 4 cut(s) 5, 186, 1157, 1422
Bso31I GGTCTC 1 cut(s) 1253
BsoBI CYCGRG 1 cut(s) 1439
Bsp120I GGGCCC 1 cut(s) 1420
Bsp1286I GDGCHC 6 cut(s) 100, 832, 964, 1009, 1111, 1424
Bsp13I TCCGGA 1 cut(s) 1124
Bsp19I CCATGG 1 cut(s) 181
BspANI GGCC 4 cut(s) 5, 186, 1157, 1422
BspEI TCCGGA 1 cut(s) 1124
BspLI GGNNCC 7 cut(s) 690, 786, 918, 1158, 1290, 1421, 1422
BspMAI CTGCAG 1 cut(s) 1384
BspMI ACCTGC 1 cut(s) 1388
BspT107I GGYRCC 2 cut(s) 784, 916
BspTNI GGTCTC 1 cut(s) 1253
BsrI ACTGG 4 cut(s) 819, 845, 951, 1158
BssECI CCNNGG 3 cut(s) 6, 181, 627
BssNAI GTATAC 1 cut(s) 805
BssNI GRCGYC 2 cut(s) 785, 917
BssT1I CCWWGG 2 cut(s) 6, 181
Bst1107I GTATAC 1 cut(s) 805
Bst2UI CCWGG 2 cut(s) 628, 1065
Bst4CI ACNGT 4 cut(s) 111, 1106, 1140, 1189
Bst6I CTCTTC 1 cut(s) 1271
BstACI GRCGYC 2 cut(s) 785, 917
BstAPI GCANNNNNTGC 1 cut(s) 1376
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 181
BstENI CCTNNNNNAGG 1 cut(s) 1125
BstF5I GGATG 4 cut(s) 202, 623, 1131, 1477
BstH2I RGCGCY 2 cut(s) 788, 920
BstHHI GCGC 5 cut(s) 235, 787, 875, 919, 1057
BstMAI GTCTC 3 cut(s) 117, 1210, 1253
BstMWI GCNNNNNNNGC 3 cut(s) 1376, 1382, 1460
BstNI CCWGG 2 cut(s) 628, 1065
BstSCI CCNGG 3 cut(s) 626, 1063, 1165
BstSFI CTRYAG 3 cut(s) 24, 36, 1380
BstSLI GKGCMC 1 cut(s) 1424
BstV1I GCAGC 4 cut(s) 1307, 1363, 1366, 1394
BstXI CCANNNNNNTGG 1 cut(s) 1153
BstZ17I GTATAC 1 cut(s) 805
BsuRI GGCC 4 cut(s) 5, 186, 1157, 1422
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 1177
BtsCI GGATG 4 cut(s) 202, 623, 1131, 1477
BtsI GCAGTG 3 cut(s) 537, 585, 665
BtsIMutI CAGTG 5 cut(s) 537, 585, 665, 826, 1185
BveI ACCTGC 1 cut(s) 1388
CfoI GCGC 5 cut(s) 235, 787, 875, 919, 1057
Cfr13I GGNCC 3 cut(s) 1156, 1420, 1421
Csp6I GTAC 1 cut(s) 892
CviQI GTAC 1 cut(s) 892
DdeI CTNAG 1 cut(s) 357
DinI GGCGCC 2 cut(s) 786, 918
EaeI YGGCCR 2 cut(s) 3, 184
Eam1104I CTCTTC 1 cut(s) 1271
EarI CTCTTC 1 cut(s) 1271
EciI GGCGGA 4 cut(s) 438, 471, 519, 567
Ecl136II GAGCTC 2 cut(s) 962, 1007
Eco130I CCWWGG 2 cut(s) 6, 181
Eco24I GRGCYC 3 cut(s) 964, 1009, 1424
Eco31I GGTCTC 1 cut(s) 1253
Eco53kI GAGCTC 2 cut(s) 962, 1007
Eco88I CYCGRG 1 cut(s) 1439
EcoICRI GAGCTC 2 cut(s) 962, 1007
EcoNI CCTNNNNNAGG 1 cut(s) 1125
EcoO109I RGGNCCY 1 cut(s) 1420
EcoRII CCWGG 2 cut(s) 626, 1063
EcoT14I CCWWGG 2 cut(s) 6, 181
EcoT38I GRGCYC 3 cut(s) 964, 1009, 1424
EgeI GGCGCC 2 cut(s) 786, 918
EheI GGCGCC 2 cut(s) 786, 918
ErhI CCWWGG 2 cut(s) 6, 181
Esp3I CGTCTC 1 cut(s) 117
FauI CCCGC 2 cut(s) 1163, 1300
FblI GTMKAC 1 cut(s) 804
Fnu4HI GCNGC 9 cut(s) 386, 788, 920, 1296, 1360, 1363, 1377, 1380, 1383
FokI GGATG 4 cut(s) 189, 610, 1118, 1464
FriOI GRGCYC 3 cut(s) 964, 1009, 1424
Fsp4HI GCNGC 9 cut(s) 386, 788, 920, 1296, 1360, 1363, 1377, 1380, 1383
FspBI CTAG 1 cut(s) 1211
FspI TGCGCA 1 cut(s) 234
GlaI GCGC 5 cut(s) 234, 786, 874, 918, 1056
GluI GCNGC 9 cut(s) 386, 788, 920, 1296, 1360, 1363, 1377, 1380, 1383
GsaI CCCAGC 1 cut(s) 777
GsuI CTGGAG 2 cut(s) 624, 1047
HaeII RGCGCY 2 cut(s) 788, 920
HaeIII GGCC 4 cut(s) 5, 186, 1157, 1422
HapII CCGG 3 cut(s) 1125, 1167, 1386
HhaI GCGC 5 cut(s) 235, 787, 875, 919, 1057
Hin1I GRCGYC 2 cut(s) 785, 917
Hin6I GCGC 5 cut(s) 233, 785, 873, 917, 1055
HinP1I GCGC 5 cut(s) 233, 785, 873, 917, 1055
HpaII CCGG 3 cut(s) 1125, 1167, 1386
Hpy166II GTNNAC 3 cut(s) 805, 937, 1354
Hpy188III TCNNGA 1 cut(s) 1125
Hpy8I GTNNAC 3 cut(s) 805, 937, 1354
HpyAV CCTTC 7 cut(s) 87, 504, 739, 818, 1131, 1247, 1406
HpyCH4III ACNGT 4 cut(s) 111, 1106, 1140, 1189
HpyCH4V TGCA 3 cut(s) 590, 1220, 1382
HpyF10VI GCNNNNNNNGC 3 cut(s) 1376, 1382, 1460
HpyF3I CTNAG 1 cut(s) 357
Hsp92I GRCGYC 2 cut(s) 785, 917
HspAI GCGC 5 cut(s) 233, 785, 873, 917, 1055
KasI GGCGCC 2 cut(s) 784, 916
Kpn2I TCCGGA 1 cut(s) 1124
LmnI GCTCC 9 cut(s) 103, 694, 835, 959, 967, 1004, 1012, 1114, 1394
Lsp1109I GCAGC 4 cut(s) 1307, 1363, 1366, 1394
LweI GCATC 4 cut(s) 152, 466, 599, 1140
MaeI CTAG 1 cut(s) 1211
MaeIII GTNAC 4 cut(s) 128, 136, 1067, 1400
MboII GAAGA 8 cut(s) 969, 1216, 1279, 1282, 1285, 1288, 1328, 1331
MhlI GDGCHC 6 cut(s) 100, 832, 964, 1009, 1111, 1424
MlsI TGGCCA 2 cut(s) 5, 186
MluCI AATT 1 cut(s) 14
MluNI TGGCCA 2 cut(s) 5, 186
Mly113I GGCGCC 2 cut(s) 785, 917
Mox20I TGGCCA 2 cut(s) 5, 186
MroI TCCGGA 1 cut(s) 1124
MscI TGGCCA 2 cut(s) 5, 186
MseI TTAA 1 cut(s) 1489
Msp20I TGGCCA 2 cut(s) 5, 186
MspI CCGG 3 cut(s) 1125, 1167, 1386
MspR9I CCNGG 3 cut(s) 628, 1065, 1167
Mva1269I GAATGC 2 cut(s) 1220, 1232
MvaI CCWGG 2 cut(s) 628, 1065
MwoI GCNNNNNNNGC 3 cut(s) 1376, 1382, 1460
NarI GGCGCC 2 cut(s) 785, 917
NciI CCSGG 1 cut(s) 1167
NcoI CCATGG 1 cut(s) 181
NlaIV GGNNCC 7 cut(s) 690, 786, 918, 1158, 1290, 1421, 1422
NmeAIII GCCGAG 2 cut(s) 665, 888
NsbI TGCGCA 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 1362
PctI GAATGC 2 cut(s) 1220, 1232
PflMI CCANNNNNTGG 1 cut(s) 701
PkrI GCNGC 9 cut(s) 387, 789, 921, 1297, 1361, 1364, 1378, 1381, 1384
PluTI GGCGCC 2 cut(s) 788, 920
Psp124BI GAGCTC 2 cut(s) 964, 1009
Psp6I CCWGG 2 cut(s) 626, 1063
PspFI CCCAGC 1 cut(s) 773
PspGI CCWGG 2 cut(s) 626, 1063
PspN4I GGNNCC 7 cut(s) 690, 786, 918, 1158, 1290, 1421, 1422
PspOMI GGGCCC 1 cut(s) 1420
PspPI GGNCC 3 cut(s) 1156, 1420, 1421
PstI CTGCAG 1 cut(s) 1384
RsaI GTAC 1 cut(s) 893
RsaNI GTAC 1 cut(s) 892
SacI GAGCTC 2 cut(s) 964, 1009
SaqAI TTAA 1 cut(s) 1489
SatI GCNGC 9 cut(s) 386, 788, 920, 1296, 1360, 1363, 1377, 1380, 1383
Sau96I GGNCC 3 cut(s) 1156, 1420, 1421
ScrFI CCNGG 3 cut(s) 628, 1065, 1167
SduI GDGCHC 6 cut(s) 100, 832, 964, 1009, 1111, 1424
SfaNI GCATC 4 cut(s) 152, 466, 599, 1140
SfcI CTRYAG 3 cut(s) 24, 36, 1380
SfoI GGCGCC 2 cut(s) 786, 918
Sse9I AATT 1 cut(s) 14
SspDI GGCGCC 2 cut(s) 784, 916
SspMI CTAG 1 cut(s) 1211
SstI GAGCTC 2 cut(s) 964, 1009
StyD4I CCNGG 3 cut(s) 626, 1063, 1165
StyI CCWWGG 2 cut(s) 6, 181
TaaI ACNGT 4 cut(s) 111, 1106, 1140, 1189
TaqII GACCGA 1 cut(s) 1235
TasI AATT 1 cut(s) 14
TauI GCSGC 5 cut(s) 388, 790, 922, 1362, 1365
Tru1I TTAA 1 cut(s) 1489
Tru9I TTAA 1 cut(s) 1489
TscAI CASTG 5 cut(s) 544, 592, 672, 826, 1192
TseI GCWGC 4 cut(s) 1295, 1376, 1379, 1382
TspDTI ATGAA 4 cut(s) 969, 1164, 1344, 1449
TspGWI ACGGA 2 cut(s) 790, 922
TspRI CASTG 5 cut(s) 544, 592, 672, 826, 1192
Van91I CCANNNNNTGG 1 cut(s) 701
XagI CCTNNNNNAGG 1 cut(s) 1125
XapI RAATTY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 624
XmiI GTMKAC 1 cut(s) 804
XspI CTAG 1 cut(s) 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.