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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 382, 796 |
| Acc36I | ACCTGC | 2 cut(s) | 382, 796 |
| AccII | CGCG | 3 cut(s) | 2637, 2925, 2959 |
| AclWI | GGATC | 1 cut(s) | 2584 |
| AcoI | YGGCCR | 2 cut(s) | 3, 677 |
| AcuI | CTGAAG | 1 cut(s) | 2601 |
| AcvI | CACGTG | 2 cut(s) | 2771, 2933 |
| AfaI | GTAC | 3 cut(s) | 330, 2704, 2788 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 3001 |
| AflIII | ACRYGT | 2 cut(s) | 2768, 2930 |
| AgsI | TTSAA | 4 cut(s) | 1668, 1857, 2405, 2619 |
| AjiI | CACGTC | 1 cut(s) | 2988 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2758, 2790 |
| AluBI | AGCT | 5 cut(s) | 1016, 1256, 2468, 2483, 2831 |
| AluI | AGCT | 5 cut(s) | 1016, 1256, 2468, 2483, 2831 |
| Alw26I | GTCTC | 3 cut(s) | 2317, 2360, 2943 |
| AlwI | GGATC | 1 cut(s) | 2584 |
| AoxI | GGCC | 3 cut(s) | 3, 677, 2978 |
| ApeKI | GCWGC | 3 cut(s) | 98, 631, 2390 |
| AspLEI | GCGC | 1 cut(s) | 2959 |
| AspS9I | GGNCC | 1 cut(s) | 2978 |
| AxyI | CCTNAGG | 1 cut(s) | 2565 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbrPI | CACGTG | 2 cut(s) | 2771, 2933 |
| BbvI | GCAGC | 3 cut(s) | 110, 618, 2402 |
| BceAI | ACGGC | 3 cut(s) | 1534, 2551, 2904 |
| BcoDI | GTCTC | 3 cut(s) | 2317, 2360, 2943 |
| BfaI | CTAG | 7 cut(s) | 221, 425, 641, 839, 1043, 1283, 2024 |
| BfmI | CTRYAG | 1 cut(s) | 260 |
| BfuAI | ACCTGC | 2 cut(s) | 382, 796 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 676 |
| BmgBI | CACGTC | 1 cut(s) | 2988 |
| BmgT120I | GGNCC | 1 cut(s) | 2978 |
| BmiI | GGNNCC | 1 cut(s) | 2776 |
| BmsI | GCATC | 1 cut(s) | 2466 |
| BpmI | CTGGAG | 3 cut(s) | 996, 1236, 1977 |
| BpuEI | CTTGAG | 2 cut(s) | 2646, 2721 |
| BsaAI | YACGTR | 2 cut(s) | 2771, 2933 |
| BsaI | GGTCTC | 1 cut(s) | 2360 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 3001 |
| Bse1I | ACTGG | 5 cut(s) | 6, 326, 1994, 2778, 2871 |
| Bse21I | CCTNAGG | 1 cut(s) | 2565 |
| Bse3DI | GCAATG | 2 cut(s) | 509, 875 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 3001 |
| BseMI | GCAATG | 2 cut(s) | 509, 875 |
| BseMII | CTCAG | 2 cut(s) | 2465, 2556 |
| BseNI | ACTGG | 5 cut(s) | 6, 326, 1994, 2778, 2871 |
| BseRI | GAGGAG | 1 cut(s) | 2088 |
| BseXI | GCAGC | 3 cut(s) | 110, 618, 2402 |
| BseYI | CCCAGC | 1 cut(s) | 2464 |
| Bsh1236I | CGCG | 3 cut(s) | 2637, 2925, 2959 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3010 |
| BshFI | GGCC | 3 cut(s) | 5, 679, 2980 |
| BsiEI | CGRYCG | 1 cut(s) | 3010 |
| BsiSI | CCGG | 2 cut(s) | 2689, 2764 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 3001 |
| BsmAI | GTCTC | 3 cut(s) | 2317, 2360, 2943 |
| BsmI | GAATGC | 1 cut(s) | 2339 |
| BsnI | GGCC | 3 cut(s) | 5, 679, 2980 |
| Bso31I | GGTCTC | 1 cut(s) | 2360 |
| Bsp143I | GATC | 6 cut(s) | 2576, 2602, 2653, 2728, 2812, 2851 |
| Bsp68I | TCGCGA | 2 cut(s) | 2637, 2925 |
| BspANI | GGCC | 3 cut(s) | 5, 679, 2980 |
| BspCNI | CTCAG | 2 cut(s) | 2464, 2557 |
| BspFNI | CGCG | 3 cut(s) | 2637, 2925, 2959 |
| BspLI | GGNNCC | 1 cut(s) | 2776 |
| BspMI | ACCTGC | 2 cut(s) | 382, 796 |
| BspPI | GGATC | 1 cut(s) | 2584 |
| BspTNI | GGTCTC | 1 cut(s) | 2360 |
| BsrDI | GCAATG | 2 cut(s) | 509, 875 |
| BsrI | ACTGG | 5 cut(s) | 6, 326, 1994, 2778, 2871 |
| BssMI | GATC | 6 cut(s) | 2576, 2602, 2653, 2728, 2812, 2851 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2345 |
| BstBAI | YACGTR | 2 cut(s) | 2771, 2933 |
| BstC8I | GCNNGC | 4 cut(s) | 2366, 2717, 2801, 2961 |
| BstDEI | CTNAG | 2 cut(s) | 2451, 2565 |
| BstFNI | CGCG | 3 cut(s) | 2637, 2925, 2959 |
| BstHHI | GCGC | 1 cut(s) | 2959 |
| BstKTI | GATC | 6 cut(s) | 2579, 2605, 2656, 2731, 2815, 2854 |
| BstMAI | GTCTC | 3 cut(s) | 2317, 2360, 2943 |
| BstMBI | GATC | 6 cut(s) | 2576, 2602, 2653, 2728, 2812, 2851 |
| BstMCI | CGRYCG | 1 cut(s) | 3010 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 46, 253, 262, 667, 676, 865, 1075, 1321, 2345 |
| BstNSI | RCATGY | 6 cut(s) | 177, 381, 600, 795, 999, 1239 |
| BstSFI | CTRYAG | 1 cut(s) | 260 |
| BstUI | CGCG | 3 cut(s) | 2637, 2925, 2959 |
| BstV1I | GCAGC | 3 cut(s) | 110, 618, 2402 |
| BstX2I | RGATCY | 1 cut(s) | 2576 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2528 |
| BstYI | RGATCY | 1 cut(s) | 2576 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2565 |
| BsuRI | GGCC | 3 cut(s) | 5, 679, 2980 |
| BtgZI | GCGATG | 3 cut(s) | 2270, 2443, 2652 |
| BtrI | CACGTC | 1 cut(s) | 2988 |
| BtsI | GCAGTG | 6 cut(s) | 44, 461, 923, 1079, 1325, 2545 |
| BtsIMutI | CAGTG | 8 cut(s) | 44, 461, 923, 1079, 1325, 2001, 2545, 2785 |
| BtuMI | TCGCGA | 2 cut(s) | 2637, 2925 |
| BveI | ACCTGC | 2 cut(s) | 382, 796 |
| Cac8I | GCNNGC | 4 cut(s) | 2366, 2717, 2801, 2961 |
| CfoI | GCGC | 1 cut(s) | 2959 |
| Cfr13I | GGNCC | 1 cut(s) | 2978 |
| Csp6I | GTAC | 3 cut(s) | 329, 2703, 2787 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2037, 2072 |
| CviQI | GTAC | 3 cut(s) | 329, 2703, 2787 |
| DdeI | CTNAG | 2 cut(s) | 2451, 2565 |
| DpnI | GATC | 6 cut(s) | 2578, 2604, 2655, 2730, 2814, 2853 |
| DpnII | GATC | 6 cut(s) | 2576, 2602, 2653, 2728, 2812, 2851 |
| EaeI | YGGCCR | 2 cut(s) | 3, 677 |
| EciI | GGCGGA | 1 cut(s) | 1743 |
| Eco31I | GGTCTC | 1 cut(s) | 2360 |
| Eco57I | CTGAAG | 1 cut(s) | 2601 |
| Eco72I | CACGTG | 2 cut(s) | 2771, 2933 |
| Eco81I | CCTNAGG | 1 cut(s) | 2565 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2978 |
| FauI | CCCGC | 3 cut(s) | 33, 711, 1984 |
| FspBI | CTAG | 7 cut(s) | 221, 425, 641, 839, 1043, 1283, 2024 |
| GlaI | GCGC | 1 cut(s) | 2958 |
| GsaI | CCCAGC | 1 cut(s) | 2468 |
| GsuI | CTGGAG | 3 cut(s) | 996, 1236, 1977 |
| HaeIII | GGCC | 3 cut(s) | 5, 679, 2980 |
| HapII | CCGG | 2 cut(s) | 2689, 2764 |
| HhaI | GCGC | 1 cut(s) | 2959 |
| Hin6I | GCGC | 1 cut(s) | 2957 |
| HinP1I | GCGC | 1 cut(s) | 2957 |
| HpaII | CCGG | 2 cut(s) | 2689, 2764 |
| Hpy166II | GTNNAC | 5 cut(s) | 1955, 2015, 2075, 2443, 2864 |
| Hpy188I | TCNGA | 9 cut(s) | 2241, 2454, 2508, 2581, 2602, 2653, 2671, 2746, 2905 |
| Hpy188III | TCNNGA | 6 cut(s) | 80, 1467, 2636, 2663, 2738, 2924 |
| Hpy8I | GTNNAC | 5 cut(s) | 1955, 2015, 2075, 2443, 2864 |
| Hpy99I | CGWCG | 6 cut(s) | 2637, 2688, 2763, 2925, 2946, 2949 |
| HpyCH4IV | ACGT | 4 cut(s) | 2695, 2770, 2932, 2987 |
| HpyCH4V | TGCA | 7 cut(s) | 377, 791, 2339, 2348, 2368, 2390, 2420 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 46, 253, 262, 667, 676, 865, 1075, 1321, 2345 |
| HpyF3I | CTNAG | 2 cut(s) | 2451, 2565 |
| HpySE526I | ACGT | 4 cut(s) | 2695, 2770, 2932, 2987 |
| HspAI | GCGC | 1 cut(s) | 2957 |
| Kzo9I | GATC | 6 cut(s) | 2576, 2602, 2653, 2728, 2812, 2851 |
| LmnI | GCTCC | 1 cut(s) | 2428 |
| Lsp1109I | GCAGC | 3 cut(s) | 110, 618, 2402 |
| LweI | GCATC | 1 cut(s) | 2466 |
| MaeI | CTAG | 7 cut(s) | 221, 425, 641, 839, 1043, 1283, 2024 |
| MaeII | ACGT | 4 cut(s) | 2695, 2770, 2932, 2987 |
| MalI | GATC | 6 cut(s) | 2578, 2604, 2655, 2730, 2814, 2853 |
| MboI | GATC | 6 cut(s) | 2576, 2602, 2653, 2728, 2812, 2851 |
| MboII | GAAGA | 9 cut(s) | 1401, 1554, 2288, 2386, 2564, 2594, 2606, 2657, 2891 |
| MfeI | CAATTG | 7 cut(s) | 251, 455, 665, 869, 1073, 1319, 2349 |
| MflI | RGATCY | 1 cut(s) | 2576 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 8 cut(s) | 251, 455, 665, 869, 1073, 1319, 2349, 2570 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 77, 2945 |
| MmeI | TCCRAC | 4 cut(s) | 215, 419, 833, 3015 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 2069, 2384, 2514 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 2 cut(s) | 2689, 2764 |
| MunI | CAATTG | 7 cut(s) | 251, 455, 665, 869, 1073, 1319, 2349 |
| Mva1269I | GAATGC | 1 cut(s) | 2339 |
| MvnI | CGCG | 3 cut(s) | 2637, 2925, 2959 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 46, 253, 262, 667, 676, 865, 1075, 1321, 2345 |
| NdeII | GATC | 6 cut(s) | 2576, 2602, 2653, 2728, 2812, 2851 |
| NlaIV | GGNNCC | 1 cut(s) | 2776 |
| NruI | TCGCGA | 2 cut(s) | 2637, 2925 |
| NspI | RCATGY | 6 cut(s) | 177, 381, 600, 795, 999, 1239 |
| PaqCI | CACCTGC | 2 cut(s) | 382, 796 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 2692, 2767, 2929, 2938 |
| PctI | GAATGC | 1 cut(s) | 2339 |
| PfeI | GAWTC | 8 cut(s) | 2597, 2615, 2648, 2666, 2741, 2825, 2870, 2912 |
| PleI | GAGTC | 2 cut(s) | 77, 2944 |
| PmaCI | CACGTG | 2 cut(s) | 2771, 2933 |
| PmlI | CACGTG | 2 cut(s) | 2771, 2933 |
| PpsI | GAGTC | 2 cut(s) | 77, 2944 |
| Ppu21I | YACGTR | 2 cut(s) | 2771, 2933 |
| PspCI | CACGTG | 2 cut(s) | 2771, 2933 |
| PspFI | CCCAGC | 1 cut(s) | 2464 |
| PspN4I | GGNNCC | 1 cut(s) | 2776 |
| PspPI | GGNCC | 1 cut(s) | 2978 |
| PsuI | RGATCY | 1 cut(s) | 2576 |
| RruI | TCGCGA | 2 cut(s) | 2637, 2925 |
| RsaI | GTAC | 3 cut(s) | 330, 2704, 2788 |
| RsaNI | GTAC | 3 cut(s) | 329, 2703, 2787 |
| SaqAI | TTAA | 3 cut(s) | 2069, 2384, 2514 |
| Sau3AI | GATC | 6 cut(s) | 2576, 2602, 2653, 2728, 2812, 2851 |
| Sau96I | GGNCC | 1 cut(s) | 2978 |
| SchI | GAGTC | 2 cut(s) | 77, 2945 |
| SfaNI | GCATC | 1 cut(s) | 2466 |
| SfcI | CTRYAG | 1 cut(s) | 260 |
| SmlI | CTYRAG | 2 cut(s) | 2661, 2736 |
| SmoI | CTYRAG | 2 cut(s) | 2661, 2736 |
| Sse9I | AATT | 8 cut(s) | 251, 455, 665, 869, 1073, 1319, 2349, 2570 |
| SspI | AATATT | 1 cut(s) | 618 |
| SspMI | CTAG | 7 cut(s) | 221, 425, 641, 839, 1043, 1283, 2024 |
| TaiI | ACGT | 4 cut(s) | 2698, 2773, 2935, 2990 |
| TasI | AATT | 8 cut(s) | 251, 455, 665, 869, 1073, 1319, 2349, 2570 |
| TauI | GCSGC | 8 cut(s) | 214, 418, 679, 832, 868, 1771, 1774, 2215 |
| TfiI | GAWTC | 8 cut(s) | 2597, 2615, 2648, 2666, 2741, 2825, 2870, 2912 |
| Tru1I | TTAA | 3 cut(s) | 2069, 2384, 2514 |
| Tru9I | TTAA | 3 cut(s) | 2069, 2384, 2514 |
| TscAI | CASTG | 8 cut(s) | 51, 468, 930, 1086, 1332, 2001, 2545, 2785 |
| TseI | GCWGC | 3 cut(s) | 98, 631, 2390 |
| TspGWI | ACGGA | 4 cut(s) | 324, 735, 942, 3017 |
| TspRI | CASTG | 8 cut(s) | 51, 468, 930, 1086, 1332, 2001, 2545, 2785 |
| XceI | RCATGY | 6 cut(s) | 177, 381, 600, 795, 999, 1239 |
| XspI | CTAG | 7 cut(s) | 221, 425, 641, 839, 1043, 1283, 2024 |