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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 82, 925 |
| Acc36I | ACCTGC | 2 cut(s) | 82, 925 |
| AccB1I | GGYRCC | 2 cut(s) | 988, 1046 |
| AccII | CGCG | 1 cut(s) | 1025 |
| AfaI | GTAC | 3 cut(s) | 444, 504, 747 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 868, 901, 902, 998, 1178 |
| AgsI | TTSAA | 1 cut(s) | 958 |
| AjnI | CCWGG | 3 cut(s) | 928, 1038, 1300 |
| AluBI | AGCT | 4 cut(s) | 96, 557, 1262, 1289 |
| AluI | AGCT | 4 cut(s) | 96, 557, 1262, 1289 |
| Alw26I | GTCTC | 1 cut(s) | 1039 |
| AoxI | GGCC | 3 cut(s) | 1075, 1271, 1280 |
| ApeKI | GCWGC | 5 cut(s) | 732, 872, 1124, 1199, 1259 |
| AspLEI | GCGC | 3 cut(s) | 877, 1190, 1204 |
| AspS9I | GGNCC | 2 cut(s) | 1271, 1280 |
| AsuC2I | CCSGG | 1 cut(s) | 999 |
| BanI | GGYRCC | 2 cut(s) | 988, 1046 |
| BbvI | GCAGC | 5 cut(s) | 744, 884, 1136, 1186, 1271 |
| BccI | CCATC | 5 cut(s) | 141, 150, 174, 309, 1108 |
| BciT130I | CCWGG | 3 cut(s) | 930, 1040, 1302 |
| BcnI | CCSGG | 1 cut(s) | 999 |
| BcoDI | GTCTC | 1 cut(s) | 1039 |
| BfmI | CTRYAG | 2 cut(s) | 1122, 1224 |
| BfoI | RGCGCY | 1 cut(s) | 878 |
| BfuAI | ACCTGC | 2 cut(s) | 82, 925 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1279 |
| BisI | GCNGC | 6 cut(s) | 197, 733, 873, 1125, 1200, 1260 |
| BlsI | GCNGC | 6 cut(s) | 198, 734, 874, 1126, 1201, 1261 |
| Bme1390I | CCNGG | 4 cut(s) | 930, 999, 1040, 1302 |
| BmgT120I | GGNCC | 2 cut(s) | 1271, 1280 |
| BmiI | GGNNCC | 5 cut(s) | 486, 990, 1048, 1119, 1221 |
| BmrFI | CCNGG | 4 cut(s) | 930, 999, 1040, 1302 |
| BmrI | ACTGGG | 1 cut(s) | 786 |
| BmsI | GCATC | 2 cut(s) | 626, 848 |
| BmuI | ACTGGG | 1 cut(s) | 786 |
| BpmI | CTGGAG | 5 cut(s) | 567, 666, 726, 1194, 1284 |
| BpuEI | CTTGAG | 1 cut(s) | 420 |
| BpuMI | CCSGG | 1 cut(s) | 999 |
| BsaJI | CCNNGG | 3 cut(s) | 998, 1038, 1039 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 847, 877 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 868, 901, 902, 998, 1178 |
| Bse1I | ACTGG | 5 cut(s) | 584, 683, 743, 792, 1211 |
| BseBI | CCWGG | 3 cut(s) | 930, 1040, 1302 |
| BseDI | CCNNGG | 3 cut(s) | 998, 1038, 1039 |
| BseGI | GGATG | 4 cut(s) | 142, 166, 505, 1309 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 868, 901, 902, 998, 1178 |
| BseMII | CTCAG | 2 cut(s) | 465, 1254 |
| BseNI | ACTGG | 5 cut(s) | 584, 683, 743, 792, 1211 |
| BseRI | GAGGAG | 5 cut(s) | 12, 45, 933, 1197, 1287 |
| BseXI | GCAGC | 5 cut(s) | 744, 884, 1136, 1186, 1271 |
| BseYI | CCCAGC | 1 cut(s) | 518 |
| BsgI | GTGCAG | 1 cut(s) | 1278 |
| Bsh1236I | CGCG | 1 cut(s) | 1025 |
| BshFI | GGCC | 3 cut(s) | 1077, 1273, 1282 |
| BshNI | GGYRCC | 2 cut(s) | 988, 1046 |
| BsiSI | CCGG | 1 cut(s) | 998 |
| BslFI | GGGAC | 1 cut(s) | 950 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 868, 901, 902, 998, 1178 |
| BsmAI | GTCTC | 1 cut(s) | 1039 |
| BsmBI | CGTCTC | 1 cut(s) | 1039 |
| BsmFI | GGGAC | 1 cut(s) | 950 |
| BsmI | GAATGC | 1 cut(s) | 920 |
| BsnI | GGCC | 3 cut(s) | 1077, 1273, 1282 |
| Bsp1407I | TGTACA | 1 cut(s) | 502 |
| Bsp143I | GATC | 1 cut(s) | 1266 |
| BspANI | GGCC | 3 cut(s) | 1077, 1273, 1282 |
| BspCNI | CTCAG | 2 cut(s) | 464, 1255 |
| BspFNI | CGCG | 1 cut(s) | 1025 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspLI | GGNNCC | 5 cut(s) | 486, 990, 1048, 1119, 1221 |
| BspMAI | CTGCAG | 1 cut(s) | 1126 |
| BspMI | ACCTGC | 2 cut(s) | 82, 925 |
| BspT107I | GGYRCC | 2 cut(s) | 988, 1046 |
| BsrGI | TGTACA | 1 cut(s) | 502 |
| BsrI | ACTGG | 5 cut(s) | 584, 683, 743, 792, 1211 |
| BssECI | CCNNGG | 3 cut(s) | 998, 1038, 1039 |
| BssMI | GATC | 1 cut(s) | 1266 |
| Bst2UI | CCWGG | 3 cut(s) | 930, 1040, 1302 |
| Bst4CI | ACNGT | 1 cut(s) | 1018 |
| Bst6I | CTCTTC | 1 cut(s) | 1100 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1196 |
| BstAUI | TGTACA | 1 cut(s) | 502 |
| BstC8I | GCNNGC | 1 cut(s) | 1173 |
| BstDEI | CTNAG | 3 cut(s) | 451, 1069, 1263 |
| BstF5I | GGATG | 4 cut(s) | 142, 166, 505, 1309 |
| BstFNI | CGCG | 1 cut(s) | 1025 |
| BstH2I | RGCGCY | 1 cut(s) | 878 |
| BstHHI | GCGC | 3 cut(s) | 877, 1190, 1204 |
| BstKTI | GATC | 1 cut(s) | 1269 |
| BstMAI | GTCTC | 1 cut(s) | 1039 |
| BstMBI | GATC | 1 cut(s) | 1266 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 193, 1083, 1172, 1196, 1279 |
| BstNI | CCWGG | 3 cut(s) | 930, 1040, 1302 |
| BstSCI | CCNGG | 4 cut(s) | 928, 997, 1038, 1300 |
| BstSFI | CTRYAG | 2 cut(s) | 1122, 1224 |
| BstUI | CGCG | 1 cut(s) | 1025 |
| BstV1I | GCAGC | 5 cut(s) | 744, 884, 1136, 1186, 1271 |
| BsuRI | GGCC | 3 cut(s) | 1077, 1273, 1282 |
| BtgZI | GCGATG | 2 cut(s) | 825, 1006 |
| BtsCI | GGATG | 4 cut(s) | 142, 166, 505, 1309 |
| BtsI | GCAGTG | 1 cut(s) | 1173 |
| BtsIMutI | CAGTG | 2 cut(s) | 1014, 1173 |
| BveI | ACCTGC | 2 cut(s) | 82, 925 |
| Cac8I | GCNNGC | 1 cut(s) | 1173 |
| CciI | TCATGA | 1 cut(s) | 304 |
| CfoI | GCGC | 3 cut(s) | 877, 1190, 1204 |
| Cfr13I | GGNCC | 2 cut(s) | 1271, 1280 |
| CseI | GACGC | 2 cut(s) | 270, 1021 |
| Csp6I | GTAC | 3 cut(s) | 443, 503, 746 |
| CviAII | CATG | 8 cut(s) | 48, 81, 212, 257, 305, 353, 401, 479 |
| CviQI | GTAC | 3 cut(s) | 443, 503, 746 |
| DdeI | CTNAG | 3 cut(s) | 451, 1069, 1263 |
| DpnI | GATC | 1 cut(s) | 1268 |
| DpnII | GATC | 1 cut(s) | 1266 |
| Eam1104I | CTCTTC | 1 cut(s) | 1100 |
| EarI | CTCTTC | 1 cut(s) | 1100 |
| EciI | GGCGGA | 1 cut(s) | 183 |
| EcoRII | CCWGG | 3 cut(s) | 928, 1038, 1300 |
| Esp3I | CGTCTC | 1 cut(s) | 1039 |
| FaeI | CATG | 8 cut(s) | 51, 84, 215, 260, 308, 356, 404, 482 |
| FaqI | GGGAC | 1 cut(s) | 950 |
| FatI | CATG | 8 cut(s) | 47, 80, 211, 256, 304, 352, 400, 478 |
| FauI | CCCGC | 1 cut(s) | 975 |
| FauNDI | CATATG | 1 cut(s) | 1192 |
| Fnu4HI | GCNGC | 6 cut(s) | 197, 733, 873, 1125, 1200, 1260 |
| FokI | GGATG | 4 cut(s) | 129, 153, 492, 1296 |
| Fsp4HI | GCNGC | 6 cut(s) | 197, 733, 873, 1125, 1200, 1260 |
| GlaI | GCGC | 3 cut(s) | 876, 1189, 1203 |
| GluI | GCNGC | 6 cut(s) | 197, 733, 873, 1125, 1200, 1260 |
| GsaI | CCCAGC | 1 cut(s) | 522 |
| GsuI | CTGGAG | 5 cut(s) | 567, 666, 726, 1194, 1284 |
| HaeII | RGCGCY | 1 cut(s) | 878 |
| HaeIII | GGCC | 3 cut(s) | 1077, 1273, 1282 |
| HapII | CCGG | 1 cut(s) | 998 |
| HgaI | GACGC | 2 cut(s) | 270, 1021 |
| HhaI | GCGC | 3 cut(s) | 877, 1190, 1204 |
| Hin1II | CATG | 8 cut(s) | 51, 84, 215, 260, 308, 356, 404, 482 |
| Hin6I | GCGC | 3 cut(s) | 875, 1188, 1202 |
| HinP1I | GCGC | 3 cut(s) | 875, 1188, 1202 |
| HindIII | AAGCTT | 1 cut(s) | 555 |
| HpaII | CCGG | 1 cut(s) | 998 |
| Hpy166II | GTNNAC | 2 cut(s) | 589, 688 |
| Hpy188I | TCNGA | 3 cut(s) | 222, 552, 979 |
| Hpy188III | TCNNGA | 1 cut(s) | 305 |
| Hpy8I | GTNNAC | 2 cut(s) | 589, 688 |
| HpyAV | CCTTC | 6 cut(s) | 42, 339, 981, 1060, 1072, 1284 |
| HpyCH4III | ACNGT | 1 cut(s) | 1018 |
| HpyCH4V | TGCA | 3 cut(s) | 920, 1124, 1259 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 193, 1083, 1172, 1196, 1279 |
| HpyF3I | CTNAG | 3 cut(s) | 451, 1069, 1263 |
| Hsp92II | CATG | 8 cut(s) | 51, 84, 215, 260, 308, 356, 404, 482 |
| HspAI | GCGC | 3 cut(s) | 875, 1188, 1202 |
| Kzo9I | GATC | 1 cut(s) | 1266 |
| LmnI | GCTCC | 2 cut(s) | 490, 1300 |
| Lsp1109I | GCAGC | 5 cut(s) | 744, 884, 1136, 1186, 1271 |
| LweI | GCATC | 2 cut(s) | 626, 848 |
| MaeIII | GTNAC | 6 cut(s) | 5, 83, 237, 282, 794, 932 |
| MalI | GATC | 1 cut(s) | 1268 |
| MboI | GATC | 1 cut(s) | 1266 |
| MboII | GAAGA | 7 cut(s) | 1045, 1108, 1111, 1114, 1117, 1157, 1160 |
| MmeI | TCCRAC | 1 cut(s) | 443 |
| MslI | CAYNNNNRTG | 6 cut(s) | 210, 255, 303, 351, 399, 1239 |
| MspA1I | CMGCKG | 1 cut(s) | 1262 |
| MspI | CCGG | 1 cut(s) | 998 |
| MspR9I | CCNGG | 4 cut(s) | 930, 999, 1040, 1302 |
| Mva1269I | GAATGC | 1 cut(s) | 920 |
| MvaI | CCWGG | 3 cut(s) | 930, 1040, 1302 |
| MvnI | CGCG | 1 cut(s) | 1025 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 193, 1083, 1172, 1196, 1279 |
| NciI | CCSGG | 1 cut(s) | 999 |
| NdeI | CATATG | 1 cut(s) | 1192 |
| NdeII | GATC | 1 cut(s) | 1266 |
| NlaIII | CATG | 8 cut(s) | 51, 84, 215, 260, 308, 356, 404, 482 |
| NlaIV | GGNNCC | 5 cut(s) | 486, 990, 1048, 1119, 1221 |
| NmuCI | GTSAC | 3 cut(s) | 237, 282, 794 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PaqCI | CACCTGC | 2 cut(s) | 82, 925 |
| PasI | CCCWGGG | 1 cut(s) | 1039 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1029 |
| PctI | GAATGC | 1 cut(s) | 920 |
| PkrI | GCNGC | 6 cut(s) | 198, 734, 874, 1126, 1201, 1261 |
| Psp6I | CCWGG | 3 cut(s) | 928, 1038, 1300 |
| PspFI | CCCAGC | 1 cut(s) | 518 |
| PspGI | CCWGG | 3 cut(s) | 928, 1038, 1300 |
| PspN4I | GGNNCC | 5 cut(s) | 486, 990, 1048, 1119, 1221 |
| PspPI | GGNCC | 2 cut(s) | 1271, 1280 |
| PstI | CTGCAG | 1 cut(s) | 1126 |
| PvuII | CAGCTG | 1 cut(s) | 1262 |
| RsaI | GTAC | 3 cut(s) | 444, 504, 747 |
| RsaNI | GTAC | 3 cut(s) | 443, 503, 746 |
| RseI | CAYNNNNRTG | 6 cut(s) | 210, 255, 303, 351, 399, 1239 |
| SatI | GCNGC | 6 cut(s) | 197, 733, 873, 1125, 1200, 1260 |
| Sau3AI | GATC | 1 cut(s) | 1266 |
| Sau96I | GGNCC | 2 cut(s) | 1271, 1280 |
| ScrFI | CCNGG | 4 cut(s) | 930, 999, 1040, 1302 |
| SfaNI | GCATC | 2 cut(s) | 626, 848 |
| SfcI | CTRYAG | 2 cut(s) | 1122, 1224 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1279 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 210, 255, 303, 351, 399, 1239 |
| SmlI | CTYRAG | 1 cut(s) | 435 |
| SmoI | CTYRAG | 1 cut(s) | 435 |
| StyD4I | CCNGG | 4 cut(s) | 928, 997, 1038, 1300 |
| TaaI | ACNGT | 1 cut(s) | 1018 |
| TatI | WGTACW | 2 cut(s) | 502, 745 |
| TauI | GCSGC | 1 cut(s) | 199 |
| TscAI | CASTG | 2 cut(s) | 1021, 1173 |
| TseFI | GTSAC | 3 cut(s) | 237, 282, 794 |
| TseI | GCWGC | 5 cut(s) | 732, 872, 1124, 1199, 1259 |
| Tsp45I | GTSAC | 3 cut(s) | 237, 282, 794 |
| TspDTI | ATGAA | 1 cut(s) | 963 |
| TspGWI | ACGGA | 2 cut(s) | 225, 1251 |
| TspRI | CASTG | 2 cut(s) | 1021, 1173 |