Rh7DG445700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000458
Physical Location & Seq
Reverse (-)
63265281 .. 63283287
18007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG445700.1

Sequence Viewer

Length: 780 bp
ATGGCGGTGGTGGTGGAGAATATTCTGACCCATATGAAGACAGCGAAGAATCTCTTCCACTTTCAGGAGGCTCGAGATAAGGAGATTGAGATGATGCATAAACATTTCTTGGAGAGCTCGGCCGCCATGAAGAAAAGGTTAAATGCAGCAAACAGACTTCAAGTTGTTTCTCATACAGTGGAGCAAGGAGAAGTTCACACCTCTCAGAGCATCGCCCCAGCTAACCAAAGTGTAACTGTCAATATAAATGACCAAAATCCGAATGTTAAGCCCCAATCTTATGGTGATGGCAGTGCGGAAGCAGAAGAAAATGACCCTGAGGAATTAGAATCCGAAGATGACGATGAAGAATCAGATCAATCTAAAGATTCAAATAAAAGGTCTCGTCGCGATGATGAAGAATCAGATCAATCTCAAGATTCCGATAAAAGTTCTCGTCGCCGGAAACGACGTGGTCGTACCAAAAAAAGCGAGCCTAAAACAGATCAATCTCAAGATTCTGATAAAAGTTCTCGTCGCAGGAAACGTGGTTCCAGTGGTCGTACCCAAAAGAGCGAGCCTAAAACAGATCAATCTAAAGATTCAGCTAACAGTTCTCGTCATCGTGATCGTAAAGGTGAACTGGAATCGCAAGAAGATAATGATAAATCAAATGGTTCAGATAAGGATTCTCGCCGTCGCGATAAACGTGAGTCTCGTCGTCGTAGTCATGCACGAGAAAACAAAGACAAAGGGCCTTCCACGTCCAACCGTGATACGGACGACCACAAAACTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.65

Weight (kDa)

7.92

Isoelectric Point (pI)

96.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 390, 681
AciI CCGC 3 cut(s) 5, 123, 296
AcoI YGGCCR 1 cut(s) 120
AfaI GTAC 2 cut(s) 460, 544
AfiI CCNNNNNNNGG 2 cut(s) 64, 757
AgsI TTSAA 2 cut(s) 161, 372
AjiI CACGTC 2 cut(s) 452, 744
AloI GAACNNNNNNTCC 2 cut(s) 514, 546
AluBI AGCT 3 cut(s) 117, 221, 587
AluI AGCT 3 cut(s) 117, 221, 587
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 387, 699
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 2 cut(s) 120, 734
ApeKI GCWGC 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
Asp700I GAANNNNTTC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 734
AsuHPI GGTGA 2 cut(s) 296, 629
AvaI CYCGRG 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 318
BanII GRGCYC 1 cut(s) 119
BauI CACGAG 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 660
BcoDI GTCTC 2 cut(s) 387, 699
BisI GCNGC 2 cut(s) 123, 147
BlsI GCNGC 2 cut(s) 124, 148
BmeT110I CYCGRG 1 cut(s) 72
BmgBI CACGTC 2 cut(s) 452, 744
BmgT120I GGNCC 1 cut(s) 734
BmiI GGNNCC 1 cut(s) 532
BmsI GCATC 2 cut(s) 84, 219
BpiI GAAGAC 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 399, 477
BsaI GGTCTC 1 cut(s) 387
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 757
Bse1I ACTGG 2 cut(s) 534, 627
Bse21I CCTNAGG 1 cut(s) 318
BseLI CCNNNNNNNGG 2 cut(s) 64, 757
BseMII CTCAG 2 cut(s) 218, 309
BseNI ACTGG 2 cut(s) 534, 627
BseX3I CGGCCG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 158
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 2 cut(s) 390, 681
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 122, 736
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 72
BsiSI CCGG 1 cut(s) 442
BslI CCNNNNNNNGG 2 cut(s) 64, 757
BsmAI GTCTC 2 cut(s) 387, 699
BsnI GGCC 2 cut(s) 122, 736
Bso31I GGTCTC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 5 cut(s) 355, 406, 484, 568, 607
Bsp68I TCGCGA 2 cut(s) 390, 681
BspACI CCGC 3 cut(s) 5, 123, 296
BspANI GGCC 2 cut(s) 122, 736
BspCNI CTCAG 2 cut(s) 217, 310
BspFNI CGCG 2 cut(s) 390, 681
BspLI GGNNCC 1 cut(s) 532
BspTNI GGTCTC 1 cut(s) 387
BsrI ACTGG 2 cut(s) 534, 627
BssMI GATC 5 cut(s) 355, 406, 484, 568, 607
BssSI CACGAG 1 cut(s) 714
Bst2BI CACGAG 1 cut(s) 714
Bst4CI ACNGT 4 cut(s) 178, 238, 593, 752
Bst6I CTCTTC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 473, 557
BstDEI CTNAG 2 cut(s) 204, 318
BstFNI CGCG 2 cut(s) 390, 681
BstKTI GATC 5 cut(s) 358, 409, 487, 571, 610
BstMAI GTCTC 2 cut(s) 387, 699
BstMBI GATC 5 cut(s) 355, 406, 484, 568, 607
BstMCI CGRYCG 1 cut(s) 123
BstUI CGCG 2 cut(s) 390, 681
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 281
BstZI CGGCCG 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 122, 736
BtgZI GCGATG 2 cut(s) 196, 405
BtrI CACGTC 2 cut(s) 452, 744
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 3 cut(s) 183, 298, 541
BtuMI TCGCGA 2 cut(s) 390, 681
Cac8I GCNNGC 2 cut(s) 473, 557
Cfr13I GGNCC 1 cut(s) 734
Csp6I GTAC 2 cut(s) 459, 543
CviAII CATG 2 cut(s) 127, 710
CviJI RGCY 9 cut(s) 71, 117, 122, 221, 271, 475, 559, 587, 736
CviKI_1 RGCY 9 cut(s) 71, 117, 122, 221, 271, 475, 559, 587, 736
CviQI GTAC 2 cut(s) 459, 543
DdeI CTNAG 2 cut(s) 204, 318
DpnI GATC 5 cut(s) 357, 408, 486, 570, 609
DpnII GATC 5 cut(s) 355, 406, 484, 568, 607
EaeI YGGCCR 1 cut(s) 120
EagI CGGCCG 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 387
Eco52I CGGCCG 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 117
Eco81I CCTNAGG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 734
EcoT22I ATGCAT 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 2 cut(s) 130, 713
FaiI YATR 9 cut(s) 33, 35, 99, 128, 174, 245, 282, 711, 778
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 2 cut(s) 126, 709
FauNDI CATATG 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 123, 147
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 123, 147
GluI GCNGC 2 cut(s) 123, 147
GsaI CCCAGC 1 cut(s) 221
HaeIII GGCC 2 cut(s) 122, 736
HapII CCGG 1 cut(s) 442
Hin1II CATG 2 cut(s) 130, 713
HpaII CCGG 1 cut(s) 442
HphI GGTGA 2 cut(s) 296, 629
Hpy166II GTNNAC 2 cut(s) 196, 620
Hpy188I TCNGA 9 cut(s) 27, 207, 261, 334, 355, 406, 424, 502, 661
Hpy188III TCNNGA 7 cut(s) 65, 74, 389, 416, 494, 605, 680
Hpy8I GTNNAC 2 cut(s) 196, 620
Hpy99I CGWCG 7 cut(s) 390, 441, 453, 519, 681, 702, 705
HpyAV CCTTC 1 cut(s) 747
HpyCH4III ACNGT 4 cut(s) 178, 238, 593, 752
HpyCH4IV ACGT 4 cut(s) 451, 526, 688, 743
HpyCH4V TGCA 3 cut(s) 97, 146, 713
HpyF3I CTNAG 2 cut(s) 204, 318
HpySE526I ACGT 4 cut(s) 451, 526, 688, 743
Hsp92II CATG 2 cut(s) 130, 713
Kzo9I GATC 5 cut(s) 355, 406, 484, 568, 607
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 7 cut(s) 50, 231, 330, 455, 505, 547, 608
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 2 cut(s) 84, 219
MaeII ACGT 4 cut(s) 451, 526, 688, 743
MaeIII GTNAC 1 cut(s) 232
MalI GATC 5 cut(s) 357, 408, 486, 570, 609
MboI GATC 5 cut(s) 355, 406, 484, 568, 607
MboII GAAGA 9 cut(s) 46, 49, 58, 142, 317, 347, 359, 410, 647
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 323
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 3 cut(s) 61, 211, 313
Mph1103I ATGCAT 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 2 cut(s) 140, 267
MspI CCGG 1 cut(s) 442
MvnI CGCG 2 cut(s) 390, 681
NdeI CATATG 1 cut(s) 33
NdeII GATC 5 cut(s) 355, 406, 484, 568, 607
NlaIII CATG 2 cut(s) 130, 713
NlaIV GGNNCC 1 cut(s) 532
NmeAIII GCCGAG 1 cut(s) 98
NruI TCGCGA 2 cut(s) 390, 681
NsiI ATGCAT 1 cut(s) 99
PaeR7I CTCGAG 1 cut(s) 72
PcsI WCGNNNNNNNCGW 5 cut(s) 445, 454, 523, 685, 694
PdmI GAANNNNTTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 453
PkrI GCNGC 2 cut(s) 124, 148
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
Psp124BI GAGCTC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 1 cut(s) 734
PsyI GACNNNGTC 1 cut(s) 453
RruI TCGCGA 2 cut(s) 390, 681
RsaI GTAC 2 cut(s) 460, 544
RsaNI GTAC 2 cut(s) 459, 543
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 140, 267
SatI GCNGC 2 cut(s) 123, 147
Sau3AI GATC 5 cut(s) 355, 406, 484, 568, 607
Sau96I GGNCC 1 cut(s) 734
SchI GAGTC 1 cut(s) 701
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 2 cut(s) 84, 219
Sfr274I CTCGAG 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 3 cut(s) 72, 414, 492
SmoI CTYRAG 3 cut(s) 72, 414, 492
Sse9I AATT 1 cut(s) 323
SsiI CCGC 3 cut(s) 5, 123, 296
SspI AATATT 1 cut(s) 22
SstI GAGCTC 1 cut(s) 119
TaaI ACNGT 4 cut(s) 178, 238, 593, 752
TaiI ACGT 4 cut(s) 454, 529, 691, 746
TaqI TCGA 1 cut(s) 73
TasI AATT 1 cut(s) 323
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 140, 267
Tru9I TTAA 2 cut(s) 140, 267
TscAI CASTG 3 cut(s) 183, 298, 541
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 5 cut(s) 50, 143, 360, 411, 765
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 3 cut(s) 183, 298, 541
Tth111I GACNNNGTC 1 cut(s) 453
XhoI CTCGAG 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.