FvH4_5g36130

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000458
Physical Location & Seq
Reverse (-)
26473681 .. 26474381
701 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36130.t1

Sequence Viewer

Length: 561 bp
ATGGGTTATCCCTACTACTCTCCACCGCCGCCGCCATGTGCACCACCACCTTCTTCTTACCCTTACCACTCCCCACCACCACCATCAACGTCAGTACGTCACCAACTACGTACTCCAACGATCCCACCAAAACTTCCACCACCCACACCGTCACCGACTACTCAAACGGTACCGCGTCTACTTCTACCACACACACCATCACCGACTACTCCAACAGTCCAACCTCCACTACCACCGCCATCCTCACAAGCACCTGCACCTAGTCCAAGATACAAGCCTAAACCACCACTTCCGCAGCCGCCTACATATCCTTGGGCACCCACTCCTTACAACCCACTGGCACCCACTCCTTACCATCCACTGGCACCTTCACCCCAAATCTCGACGCAACACCATAAAAACCACCGCACGGTTTACATTGCCACCTTCCTCTCCCTAGGCGGCATTTTCCTCCTCGGATTCCTTGCACTTGGTCTGTTCTGCATGGCTAAGAAGAAGAAGAAAAGGGCAGCGTATGCTCCACCAGCAGCTCCTCCGGCAGCTCCTTATGCTGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

19.99

Weight (kDa)

10.13

Isoelectric Point (pI)

84.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 262
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 4 cut(s) 169, 316, 340, 364
AccB7I CCANNNNNTGG 1 cut(s) 361
AccI GTMKAC 1 cut(s) 178
AccII CGCG 1 cut(s) 175
AciI CCGC 9 cut(s) 26, 29, 32, 173, 236, 293, 299, 406, 441
AclWI GGATC 1 cut(s) 115
AfaI GTAC 3 cut(s) 96, 112, 171
AfiI CCNNNNNNNGG 2 cut(s) 361, 409
AluBI AGCT 2 cut(s) 530, 542
AluI AGCT 2 cut(s) 530, 542
Alw21I GWGCWC 1 cut(s) 43
Alw44I GTGCAC 1 cut(s) 39
AlwI GGATC 1 cut(s) 115
ApaLI GTGCAC 1 cut(s) 39
ApeKI GCWGC 5 cut(s) 295, 509, 527, 539, 551
Asp718I GGTACC 1 cut(s) 169
AspA2I CCTAGG 1 cut(s) 436
AsuHPI GGTGA 4 cut(s) 92, 144, 192, 363
AvrII CCTAGG 1 cut(s) 436
BaeGI GKGCMC 2 cut(s) 43, 319
BanI GGYRCC 4 cut(s) 169, 316, 340, 364
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 5 cut(s) 307, 521, 538, 539, 551
BccI CCATC 4 cut(s) 91, 205, 247, 363
BfaI CTAG 3 cut(s) 261, 437, 555
BfuAI ACCTGC 1 cut(s) 262
BisI GCNGC 9 cut(s) 29, 32, 296, 299, 442, 510, 528, 540, 552
BlnI CCTAGG 1 cut(s) 436
BlsI GCNGC 9 cut(s) 30, 33, 297, 300, 443, 511, 529, 541, 553
BmiI GGNNCC 4 cut(s) 171, 318, 342, 366
BsaAI YACGTR 1 cut(s) 110
BsaJI CCNNGG 3 cut(s) 311, 436, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 409
Bse1I ACTGG 2 cut(s) 342, 366
Bse3DI GCAATG 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 311, 436, 454
BseGI GGATG 2 cut(s) 239, 355
BseLI CCNNNNNNNGG 2 cut(s) 361, 409
BseMI GCAATG 1 cut(s) 417
BseNI ACTGG 2 cut(s) 342, 366
BseRI GAGGAG 2 cut(s) 443, 522
BseSI GKGCMC 2 cut(s) 43, 319
BseXI GCAGC 5 cut(s) 307, 521, 538, 539, 551
BsgI GTGCAG 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 175
BshNI GGYRCC 4 cut(s) 169, 316, 340, 364
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 536
BslI CCNNNNNNNGG 2 cut(s) 361, 409
Bsp1286I GDGCHC 2 cut(s) 43, 319
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 9 cut(s) 26, 29, 32, 173, 236, 293, 299, 406, 441
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 4 cut(s) 171, 318, 342, 366
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 4 cut(s) 169, 316, 340, 364
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 2 cut(s) 342, 366
BssECI CCNNGG 3 cut(s) 311, 436, 454
BssMI GATC 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 311, 436
Bst4CI ACNGT 4 cut(s) 150, 169, 217, 412
BstAPI GCANNNNNTGC 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 489
BstF5I GGATG 2 cut(s) 239, 355
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 4 cut(s) 515, 524, 536, 548
BstSLI GKGCMC 2 cut(s) 43, 319
BstSNI TACGTA 1 cut(s) 110
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 5 cut(s) 307, 521, 538, 539, 551
BtsCI GGATG 2 cut(s) 239, 355
BtsIMutI CAGTG 2 cut(s) 335, 359
BveI ACCTGC 1 cut(s) 262
CseI GACGC 2 cut(s) 164, 394
Csp6I GTAC 3 cut(s) 95, 111, 170
CviAII CATG 2 cut(s) 36, 484
CviJI RGCY 5 cut(s) 277, 298, 488, 530, 542
CviKI_1 RGCY 5 cut(s) 277, 298, 488, 530, 542
CviQI GTAC 3 cut(s) 95, 111, 170
DdeI CTNAG 1 cut(s) 489
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eco105I TACGTA 1 cut(s) 110
Eco130I CCWWGG 2 cut(s) 311, 436
EcoT14I CCWWGG 2 cut(s) 311, 436
ErhI CCWWGG 2 cut(s) 311, 436
FaeI CATG 2 cut(s) 39, 487
FaiI YATR 6 cut(s) 37, 307, 396, 485, 516, 549
FatI CATG 2 cut(s) 35, 483
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 9 cut(s) 29, 32, 296, 299, 442, 510, 528, 540, 552
FokI GGATG 2 cut(s) 226, 342
Fsp4HI GCNGC 9 cut(s) 29, 32, 296, 299, 442, 510, 528, 540, 552
FspBI CTAG 3 cut(s) 261, 437, 555
GluI GCNGC 9 cut(s) 29, 32, 296, 299, 442, 510, 528, 540, 552
HapII CCGG 1 cut(s) 536
HgaI GACGC 2 cut(s) 164, 394
Hin1II CATG 2 cut(s) 39, 487
HinfI GANTC 1 cut(s) 459
HpaII CCGG 1 cut(s) 536
HphI GGTGA 4 cut(s) 92, 144, 192, 363
Hpy166II GTNNAC 3 cut(s) 41, 179, 415
Hpy188I TCNGA 1 cut(s) 458
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 3 cut(s) 41, 179, 415
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 3 cut(s) 60, 378, 436
HpyCH4III ACNGT 4 cut(s) 150, 169, 217, 412
HpyCH4IV ACGT 3 cut(s) 89, 97, 109
HpyCH4V TGCA 4 cut(s) 41, 257, 467, 483
HpyF10VI GCNNNNNNNGC 4 cut(s) 515, 524, 536, 548
HpyF3I CTNAG 1 cut(s) 489
HpySE526I ACGT 3 cut(s) 89, 97, 109
Hsp92II CATG 2 cut(s) 39, 487
KpnI GGTACC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 3 cut(s) 523, 535, 547
LpnPI CCDG 5 cut(s) 267, 323, 347, 537, 549
Lsp1109I GCAGC 5 cut(s) 307, 521, 538, 539, 551
MaeI CTAG 3 cut(s) 261, 437, 555
MaeII ACGT 3 cut(s) 89, 97, 109
MaeIII GTNAC 2 cut(s) 98, 150
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 4 cut(s) 45, 505, 508, 511
MhlI GDGCHC 2 cut(s) 43, 319
MmeI TCCRAC 3 cut(s) 140, 236, 244
MnlI CCTC 6 cut(s) 234, 253, 440, 461, 464, 543
MspI CCGG 1 cut(s) 536
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 4 cut(s) 515, 524, 536, 548
NdeII GATC 1 cut(s) 120
NlaIII CATG 2 cut(s) 39, 487
NlaIV GGNNCC 4 cut(s) 171, 318, 342, 366
NmuCI GTSAC 2 cut(s) 98, 150
PaqCI CACCTGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 459
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 9 cut(s) 30, 33, 297, 300, 443, 511, 529, 541, 553
Ppu21I YACGTR 1 cut(s) 110
PspN4I GGNNCC 4 cut(s) 171, 318, 342, 366
RsaI GTAC 3 cut(s) 96, 112, 171
RsaNI GTAC 3 cut(s) 95, 111, 170
SatI GCNGC 9 cut(s) 29, 32, 296, 299, 442, 510, 528, 540, 552
Sau3AI GATC 1 cut(s) 120
SduI GDGCHC 2 cut(s) 43, 319
SnaBI TACGTA 1 cut(s) 110
SsiI CCGC 9 cut(s) 26, 29, 32, 173, 236, 293, 299, 406, 441
SspMI CTAG 3 cut(s) 261, 437, 555
StyI CCWWGG 2 cut(s) 311, 436
TaaI ACNGT 4 cut(s) 150, 169, 217, 412
TaiI ACGT 3 cut(s) 92, 100, 112
TaqI TCGA 1 cut(s) 383
TauI GCSGC 4 cut(s) 31, 34, 301, 444
TfiI GAWTC 1 cut(s) 459
TscAI CASTG 2 cut(s) 342, 366
TseFI GTSAC 2 cut(s) 98, 150
TseI GCWGC 5 cut(s) 295, 509, 527, 539, 551
Tsp45I GTSAC 2 cut(s) 98, 150
TspRI CASTG 2 cut(s) 342, 366
Van91I CCANNNNNTGG 1 cut(s) 361
VneI GTGCAC 1 cut(s) 39
XmaJI CCTAGG 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 178
XspI CTAG 3 cut(s) 261, 437, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.