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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 234 |
| Acc36I | ACCTGC | 1 cut(s) | 1478 |
| AccB1I | GGYRCC | 2 cut(s) | 829, 1550 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 746 |
| AccI | GTMKAC | 2 cut(s) | 849, 981 |
| AccII | CGCG | 1 cut(s) | 962 |
| AcoI | YGGCCR | 2 cut(s) | 3, 184 |
| AcsI | RAATTY | 1 cut(s) | 14 |
| AcyI | GRCGYC | 1 cut(s) | 830 |
| AfaI | GTAC | 3 cut(s) | 227, 938, 1160 |
| AjnI | CCWGG | 2 cut(s) | 671, 1153 |
| AluBI | AGCT | 5 cut(s) | 51, 689, 822, 1052, 1097 |
| AluI | AGCT | 5 cut(s) | 51, 689, 822, 1052, 1097 |
| Alw21I | GWGCWC | 5 cut(s) | 877, 1009, 1054, 1099, 1201 |
| Alw26I | GTCTC | 3 cut(s) | 117, 1300, 1343 |
| Alw44I | GTGCAC | 1 cut(s) | 1005 |
| Ama87I | CYCGRG | 1 cut(s) | 1529 |
| AoxI | GGCC | 4 cut(s) | 3, 184, 1245, 1511 |
| ApaLI | GTGCAC | 1 cut(s) | 1005 |
| ApeKI | GCWGC | 4 cut(s) | 1385, 1466, 1469, 1472 |
| ApoI | RAATTY | 1 cut(s) | 14 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1398, 1430 |
| AscI | GGCGCGCC | 1 cut(s) | 960 |
| AspLEI | GCGC | 6 cut(s) | 235, 832, 920, 962, 964, 1147 |
| AspS9I | GGNCC | 2 cut(s) | 1246, 1511 |
| AsuC2I | CCSGG | 1 cut(s) | 1257 |
| AvaI | CYCGRG | 1 cut(s) | 1529 |
| BaeGI | GKGCMC | 1 cut(s) | 1009 |
| BalI | TGGCCA | 2 cut(s) | 5, 186 |
| BanI | GGYRCC | 2 cut(s) | 829, 1550 |
| BanII | GRGCYC | 2 cut(s) | 1054, 1099 |
| Bbv12I | GWGCWC | 5 cut(s) | 877, 1009, 1054, 1099, 1201 |
| BbvI | GCAGC | 4 cut(s) | 1397, 1453, 1456, 1484 |
| BceAI | ACGGC | 4 cut(s) | 742, 1271, 1373, 1462 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1445, 1479 |
| BciT130I | CCWGG | 2 cut(s) | 673, 1155 |
| BcnI | CCSGG | 1 cut(s) | 1257 |
| BcoDI | GTCTC | 3 cut(s) | 117, 1300, 1343 |
| BfaI | CTAG | 1 cut(s) | 1301 |
| BfmI | CTRYAG | 2 cut(s) | 36, 1470 |
| BfoI | RGCGCY | 1 cut(s) | 833 |
| BfuAI | ACCTGC | 1 cut(s) | 1478 |
| BisI | GCNGC | 8 cut(s) | 833, 965, 1386, 1450, 1453, 1467, 1470, 1473 |
| BlsI | GCNGC | 8 cut(s) | 834, 966, 1387, 1451, 1454, 1468, 1471, 1474 |
| Bme1390I | CCNGG | 3 cut(s) | 673, 1155, 1257 |
| BmeT110I | CYCGRG | 1 cut(s) | 1529 |
| BmgT120I | GGNCC | 2 cut(s) | 1246, 1511 |
| BmiI | GGNNCC | 5 cut(s) | 735, 831, 1248, 1380, 1552 |
| BmrFI | CCNGG | 3 cut(s) | 673, 1155, 1257 |
| BmrI | ACTGGG | 3 cut(s) | 858, 990, 1035 |
| BmsI | GCATC | 4 cut(s) | 152, 463, 644, 1230 |
| BmuI | ACTGGG | 3 cut(s) | 858, 990, 1035 |
| BpmI | CTGGAG | 2 cut(s) | 669, 1137 |
| Bpu10I | CCTNAGC | 1 cut(s) | 345 |
| BpuMI | CCSGG | 1 cut(s) | 1257 |
| BsaHI | GRCGYC | 1 cut(s) | 830 |
| BsaI | GGTCTC | 1 cut(s) | 1343 |
| BsaJI | CCNNGG | 4 cut(s) | 6, 181, 672, 1154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 72, 102 |
| Bse118I | RCCGGY | 1 cut(s) | 1553 |
| Bse1I | ACTGG | 5 cut(s) | 864, 890, 996, 1041, 1248 |
| Bse3DI | GCAATG | 1 cut(s) | 582 |
| BseBI | CCWGG | 2 cut(s) | 673, 1155 |
| BseDI | CCNNGG | 4 cut(s) | 6, 181, 672, 1154 |
| BseGI | GGATG | 3 cut(s) | 202, 1221, 1576 |
| BseMI | GCAATG | 1 cut(s) | 582 |
| BseNI | ACTGG | 5 cut(s) | 864, 890, 996, 1041, 1248 |
| BsePI | GCGCGC | 1 cut(s) | 960 |
| BseSI | GKGCMC | 1 cut(s) | 1009 |
| BseXI | GCAGC | 4 cut(s) | 1397, 1453, 1456, 1484 |
| BseYI | CCCAGC | 1 cut(s) | 818 |
| Bsh1236I | CGCG | 1 cut(s) | 962 |
| BshFI | GGCC | 4 cut(s) | 5, 186, 1247, 1513 |
| BshNI | GGYRCC | 2 cut(s) | 829, 1550 |
| BsiHKAI | GWGCWC | 5 cut(s) | 877, 1009, 1054, 1099, 1201 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1529 |
| BsiSI | CCGG | 3 cut(s) | 1257, 1476, 1554 |
| BsmAI | GTCTC | 3 cut(s) | 117, 1300, 1343 |
| BsmBI | CGTCTC | 1 cut(s) | 117 |
| BsmI | GAATGC | 2 cut(s) | 1310, 1322 |
| BsnI | GGCC | 4 cut(s) | 5, 186, 1247, 1513 |
| Bso31I | GGTCTC | 1 cut(s) | 1343 |
| BsoBI | CYCGRG | 1 cut(s) | 1529 |
| Bsp1286I | GDGCHC | 5 cut(s) | 877, 1009, 1054, 1099, 1201 |
| Bsp19I | CCATGG | 1 cut(s) | 181 |
| BspANI | GGCC | 4 cut(s) | 5, 186, 1247, 1513 |
| BspFNI | CGCG | 1 cut(s) | 962 |
| BspHI | TCATGA | 1 cut(s) | 1522 |
| BspLI | GGNNCC | 5 cut(s) | 735, 831, 1248, 1380, 1552 |
| BspMAI | CTGCAG | 1 cut(s) | 1474 |
| BspMI | ACCTGC | 1 cut(s) | 1478 |
| BspT107I | GGYRCC | 2 cut(s) | 829, 1550 |
| BspTNI | GGTCTC | 1 cut(s) | 1343 |
| BsrDI | GCAATG | 1 cut(s) | 582 |
| BsrFI | RCCGGY | 1 cut(s) | 1553 |
| BsrI | ACTGG | 5 cut(s) | 864, 890, 996, 1041, 1248 |
| BssAI | RCCGGY | 1 cut(s) | 1553 |
| BssECI | CCNNGG | 4 cut(s) | 6, 181, 672, 1154 |
| BssHII | GCGCGC | 1 cut(s) | 960 |
| BssNAI | GTATAC | 2 cut(s) | 850, 982 |
| BssNI | GRCGYC | 1 cut(s) | 830 |
| BssT1I | CCWWGG | 2 cut(s) | 6, 181 |
| Bst1107I | GTATAC | 2 cut(s) | 850, 982 |
| Bst2UI | CCWGG | 2 cut(s) | 673, 1155 |
| Bst4CI | ACNGT | 6 cut(s) | 111, 225, 1196, 1230, 1279, 1426 |
| Bst6I | CTCTTC | 1 cut(s) | 1361 |
| BstACI | GRCGYC | 1 cut(s) | 830 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1466 |
| BstC8I | GCNNGC | 1 cut(s) | 962 |
| BstDEI | CTNAG | 1 cut(s) | 345 |
| BstDSI | CCRYGG | 1 cut(s) | 181 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1215 |
| BstF5I | GGATG | 3 cut(s) | 202, 1221, 1576 |
| BstFNI | CGCG | 1 cut(s) | 962 |
| BstH2I | RGCGCY | 1 cut(s) | 833 |
| BstHHI | GCGC | 6 cut(s) | 235, 832, 920, 962, 964, 1147 |
| BstMAI | GTCTC | 3 cut(s) | 117, 1300, 1343 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1466, 1472, 1550, 1559 |
| BstNI | CCWGG | 2 cut(s) | 673, 1155 |
| BstSCI | CCNGG | 3 cut(s) | 671, 1153, 1255 |
| BstSFI | CTRYAG | 2 cut(s) | 36, 1470 |
| BstSLI | GKGCMC | 1 cut(s) | 1009 |
| BstUI | CGCG | 1 cut(s) | 962 |
| BstV1I | GCAGC | 4 cut(s) | 1397, 1453, 1456, 1484 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1243 |
| BstZ17I | GTATAC | 2 cut(s) | 850, 982 |
| BsuRI | GGCC | 4 cut(s) | 5, 186, 1247, 1513 |
| BtgI | CCRYGG | 1 cut(s) | 181 |
| BtgZI | GCGATG | 2 cut(s) | 161, 1267 |
| BtsCI | GGATG | 3 cut(s) | 202, 1221, 1576 |
| BtsI | GCAGTG | 2 cut(s) | 534, 710 |
| BtsIMutI | CAGTG | 5 cut(s) | 534, 710, 871, 1003, 1275 |
| BveI | ACCTGC | 1 cut(s) | 1478 |
| Cac8I | GCNNGC | 1 cut(s) | 962 |
| CciI | TCATGA | 1 cut(s) | 1522 |
| CfoI | GCGC | 6 cut(s) | 235, 832, 920, 962, 964, 1147 |
| Cfr10I | RCCGGY | 1 cut(s) | 1553 |
| Cfr13I | GGNCC | 2 cut(s) | 1246, 1511 |
| Csp6I | GTAC | 3 cut(s) | 226, 937, 1159 |
| CviQI | GTAC | 3 cut(s) | 226, 937, 1159 |
| DdeI | CTNAG | 1 cut(s) | 345 |
| DinI | GGCGCC | 1 cut(s) | 831 |
| EaeI | YGGCCR | 2 cut(s) | 3, 184 |
| Eam1104I | CTCTTC | 1 cut(s) | 1361 |
| EarI | CTCTTC | 1 cut(s) | 1361 |
| EciI | GGCGGA | 4 cut(s) | 90, 435, 468, 516 |
| Ecl136II | GAGCTC | 2 cut(s) | 1052, 1097 |
| Eco130I | CCWWGG | 2 cut(s) | 6, 181 |
| Eco24I | GRGCYC | 2 cut(s) | 1054, 1099 |
| Eco31I | GGTCTC | 1 cut(s) | 1343 |
| Eco53kI | GAGCTC | 2 cut(s) | 1052, 1097 |
| Eco88I | CYCGRG | 1 cut(s) | 1529 |
| EcoICRI | GAGCTC | 2 cut(s) | 1052, 1097 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1215 |
| EcoRII | CCWGG | 2 cut(s) | 671, 1153 |
| EcoT14I | CCWWGG | 2 cut(s) | 6, 181 |
| EcoT38I | GRGCYC | 2 cut(s) | 1054, 1099 |
| EgeI | GGCGCC | 1 cut(s) | 831 |
| EheI | GGCGCC | 1 cut(s) | 831 |
| ErhI | CCWWGG | 2 cut(s) | 6, 181 |
| Esp3I | CGTCTC | 1 cut(s) | 117 |
| FauI | CCCGC | 2 cut(s) | 1253, 1390 |
| FblI | GTMKAC | 2 cut(s) | 849, 981 |
| Fnu4HI | GCNGC | 8 cut(s) | 833, 965, 1386, 1450, 1453, 1467, 1470, 1473 |
| FokI | GGATG | 3 cut(s) | 189, 1208, 1563 |
| FriOI | GRGCYC | 2 cut(s) | 1054, 1099 |
| Fsp4HI | GCNGC | 8 cut(s) | 833, 965, 1386, 1450, 1453, 1467, 1470, 1473 |
| FspBI | CTAG | 1 cut(s) | 1301 |
| FspI | TGCGCA | 1 cut(s) | 234 |
| GlaI | GCGC | 6 cut(s) | 234, 831, 919, 961, 963, 1146 |
| GluI | GCNGC | 8 cut(s) | 833, 965, 1386, 1450, 1453, 1467, 1470, 1473 |
| GsaI | CCCAGC | 1 cut(s) | 822 |
| GsuI | CTGGAG | 2 cut(s) | 669, 1137 |
| HaeII | RGCGCY | 1 cut(s) | 833 |
| HaeIII | GGCC | 4 cut(s) | 5, 186, 1247, 1513 |
| HapII | CCGG | 3 cut(s) | 1257, 1476, 1554 |
| HhaI | GCGC | 6 cut(s) | 235, 832, 920, 962, 964, 1147 |
| Hin1I | GRCGYC | 1 cut(s) | 830 |
| Hin6I | GCGC | 6 cut(s) | 233, 830, 918, 960, 962, 1145 |
| HinP1I | GCGC | 6 cut(s) | 233, 830, 918, 960, 962, 1145 |
| HpaII | CCGG | 3 cut(s) | 1257, 1476, 1554 |
| Hpy166II | GTNNAC | 5 cut(s) | 850, 982, 1007, 1027, 1444 |
| Hpy188I | TCNGA | 1 cut(s) | 1217 |
| Hpy188III | TCNNGA | 1 cut(s) | 1523 |
| Hpy8I | GTNNAC | 5 cut(s) | 850, 982, 1007, 1027, 1444 |
| HpyAV | CCTTC | 7 cut(s) | 87, 495, 501, 863, 995, 1337, 1496 |
| HpyCH4III | ACNGT | 6 cut(s) | 111, 225, 1196, 1230, 1279, 1426 |
| HpyCH4V | TGCA | 5 cut(s) | 143, 635, 1007, 1310, 1472 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1466, 1472, 1550, 1559 |
| HpyF3I | CTNAG | 1 cut(s) | 345 |
| Hsp92I | GRCGYC | 1 cut(s) | 830 |
| HspAI | GCGC | 6 cut(s) | 233, 830, 918, 960, 962, 1145 |
| KasI | GGCGCC | 1 cut(s) | 829 |
| LmnI | GCTCC | 8 cut(s) | 739, 880, 1049, 1057, 1094, 1102, 1204, 1484 |
| Lsp1109I | GCAGC | 4 cut(s) | 1397, 1453, 1456, 1484 |
| LweI | GCATC | 4 cut(s) | 152, 463, 644, 1230 |
| MaeI | CTAG | 1 cut(s) | 1301 |
| MaeIII | GTNAC | 3 cut(s) | 128, 136, 1490 |
| MboII | GAAGA | 8 cut(s) | 1059, 1306, 1369, 1372, 1375, 1378, 1418, 1421 |
| MhlI | GDGCHC | 5 cut(s) | 877, 1009, 1054, 1099, 1201 |
| MlsI | TGGCCA | 2 cut(s) | 5, 186 |
| MluCI | AATT | 1 cut(s) | 14 |
| MluNI | TGGCCA | 2 cut(s) | 5, 186 |
| Mly113I | GGCGCC | 1 cut(s) | 830 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 186 |
| MscI | TGGCCA | 2 cut(s) | 5, 186 |
| MseI | TTAA | 1 cut(s) | 1588 |
| MslI | CAYNNNNRTG | 8 cut(s) | 180, 279, 333, 459, 507, 603, 651, 1286 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 186 |
| MspI | CCGG | 3 cut(s) | 1257, 1476, 1554 |
| MspR9I | CCNGG | 3 cut(s) | 673, 1155, 1257 |
| Mva1269I | GAATGC | 2 cut(s) | 1310, 1322 |
| MvaI | CCWGG | 2 cut(s) | 673, 1155 |
| MvnI | CGCG | 1 cut(s) | 962 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1466, 1472, 1550, 1559 |
| NarI | GGCGCC | 1 cut(s) | 830 |
| NciI | CCSGG | 1 cut(s) | 1257 |
| NcoI | CCATGG | 1 cut(s) | 181 |
| NlaIV | GGNNCC | 5 cut(s) | 735, 831, 1248, 1380, 1552 |
| NmeAIII | GCCGAG | 1 cut(s) | 710 |
| NsbI | TGCGCA | 1 cut(s) | 234 |
| PagI | TCATGA | 1 cut(s) | 1522 |
| PalAI | GGCGCGCC | 1 cut(s) | 960 |
| PauI | GCGCGC | 1 cut(s) | 960 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1452 |
| PctI | GAATGC | 2 cut(s) | 1310, 1322 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 746 |
| PkrI | GCNGC | 8 cut(s) | 834, 966, 1387, 1451, 1454, 1468, 1471, 1474 |
| PluTI | GGCGCC | 1 cut(s) | 833 |
| Psp124BI | GAGCTC | 2 cut(s) | 1054, 1099 |
| Psp6I | CCWGG | 2 cut(s) | 671, 1153 |
| PspFI | CCCAGC | 1 cut(s) | 818 |
| PspGI | CCWGG | 2 cut(s) | 671, 1153 |
| PspN4I | GGNNCC | 5 cut(s) | 735, 831, 1248, 1380, 1552 |
| PspPI | GGNCC | 2 cut(s) | 1246, 1511 |
| PstI | CTGCAG | 1 cut(s) | 1474 |
| PteI | GCGCGC | 1 cut(s) | 960 |
| RsaI | GTAC | 3 cut(s) | 227, 938, 1160 |
| RsaNI | GTAC | 3 cut(s) | 226, 937, 1159 |
| RseI | CAYNNNNRTG | 8 cut(s) | 180, 279, 333, 459, 507, 603, 651, 1286 |
| SacI | GAGCTC | 2 cut(s) | 1054, 1099 |
| SaqAI | TTAA | 1 cut(s) | 1588 |
| SatI | GCNGC | 8 cut(s) | 833, 965, 1386, 1450, 1453, 1467, 1470, 1473 |
| Sau96I | GGNCC | 2 cut(s) | 1246, 1511 |
| ScrFI | CCNGG | 3 cut(s) | 673, 1155, 1257 |
| SduI | GDGCHC | 5 cut(s) | 877, 1009, 1054, 1099, 1201 |
| SfaNI | GCATC | 4 cut(s) | 152, 463, 644, 1230 |
| SfcI | CTRYAG | 2 cut(s) | 36, 1470 |
| SfoI | GGCGCC | 1 cut(s) | 831 |
| SgsI | GGCGCGCC | 1 cut(s) | 960 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 180, 279, 333, 459, 507, 603, 651, 1286 |
| Sse9I | AATT | 1 cut(s) | 14 |
| SspDI | GGCGCC | 1 cut(s) | 829 |
| SspMI | CTAG | 1 cut(s) | 1301 |
| SstI | GAGCTC | 2 cut(s) | 1054, 1099 |
| StyD4I | CCNGG | 3 cut(s) | 671, 1153, 1255 |
| StyI | CCWWGG | 2 cut(s) | 6, 181 |
| TaaI | ACNGT | 6 cut(s) | 111, 225, 1196, 1230, 1279, 1426 |
| TaqII | GACCGA | 1 cut(s) | 1325 |
| TasI | AATT | 1 cut(s) | 14 |
| TatI | WGTACW | 1 cut(s) | 225 |
| TauI | GCSGC | 4 cut(s) | 835, 967, 1452, 1455 |
| Tru1I | TTAA | 1 cut(s) | 1588 |
| Tru9I | TTAA | 1 cut(s) | 1588 |
| TscAI | CASTG | 5 cut(s) | 541, 717, 871, 1003, 1282 |
| TseI | GCWGC | 4 cut(s) | 1385, 1466, 1469, 1472 |
| TspDTI | ATGAA | 4 cut(s) | 1059, 1254, 1434, 1539 |
| TspGWI | ACGGA | 3 cut(s) | 835, 967, 1012 |
| TspRI | CASTG | 5 cut(s) | 541, 717, 871, 1003, 1282 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 746 |
| VneI | GTGCAC | 1 cut(s) | 1005 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1215 |
| XapI | RAATTY | 1 cut(s) | 14 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 669 |
| XmiI | GTMKAC | 2 cut(s) | 849, 981 |
| XspI | CTAG | 1 cut(s) | 1301 |