RchiOBHm_Chr3g0484671

Domain of unknown function (DUF3475)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000458
Physical Location & Seq
Reverse (-)
31057062 .. 31057687
626 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44938

Sequence Viewer

Length: 372 bp
ATGCGGTCACCTGTTAAGTCCATAGCTACCAAAACCCTCCCAAAGACAAATGAGCAGCTCAAGGACATTCCCCCCTCAACCATGCTAACAACTGACGACCAGAGGATGCTGCAGGATGTCAGTAAGAGAAGCCGGGTTCCCGGAATTAGTAAAAGTCAGGACTATGACAACGCAAACTCTAGTTTGGGAAACCAGAGCAGATTGAACAAGAGTAACAGCTATACATCTGGGGAAGAAACCAAGAAATTGTTGCCTTTCAGTAGGCTCTCTTCTGGGGTTCCTGTCTTTGATTATGGTATAGATAAGGAAAAAGCCTTGGATGTCATAGATAGAGTGGACACACAGAGAGATCATCATCATCCAAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3475 DUF668

Protein Analysis

123

Amino Acids

13.87

Weight (kDa)

9.22

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 3 cut(s) 26, 58, 219
AluI AGCT 3 cut(s) 26, 58, 219
ApeKI GCWGC 2 cut(s) 55, 109
AsuC2I CCSGG 2 cut(s) 134, 141
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
BbvI GCAGC 2 cut(s) 67, 96
BcnI CCSGG 2 cut(s) 134, 141
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 110
BisI GCNGC 2 cut(s) 56, 110
BlsI GCNGC 2 cut(s) 57, 111
Bme1390I CCNGG 2 cut(s) 134, 141
BmiI GGNNCC 2 cut(s) 138, 279
BmrFI CCNGG 2 cut(s) 134, 141
BmsI GCATC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 134, 141
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 315, 362
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 315, 362
BseGI GGATG 4 cut(s) 111, 121, 325, 358
BseJI GATNNNNATC 1 cut(s) 354
BseXI GCAGC 2 cut(s) 67, 96
BsiSI CCGG 2 cut(s) 133, 141
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 1 cut(s) 4
BspLI GGNNCC 2 cut(s) 138, 279
BspMAI CTGCAG 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 315, 362
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 2 cut(s) 315, 362
Bst6I CTCTTC 1 cut(s) 274
BstEII GGTNACC 1 cut(s) 6
BstF5I GGATG 4 cut(s) 111, 121, 325, 358
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstPI GGTNACC 1 cut(s) 6
BstSCI CCNGG 2 cut(s) 132, 139
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 67, 96
BtsCI GGATG 4 cut(s) 111, 121, 325, 358
CviAII CATG 1 cut(s) 82
CviJI RGCY 6 cut(s) 26, 58, 132, 219, 265, 314
CviKI_1 RGCY 6 cut(s) 26, 58, 132, 219, 265, 314
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 315, 362
Eco91I GGTNACC 1 cut(s) 6
EcoO65I GGTNACC 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 315, 362
ErhI CCWWGG 2 cut(s) 315, 362
FaeI CATG 1 cut(s) 85
FaiI YATR 7 cut(s) 23, 83, 165, 222, 294, 299, 326
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 56, 110
FokI GGATG 4 cut(s) 118, 128, 332, 345
Fsp4HI GCNGC 2 cut(s) 56, 110
FspBI CTAG 1 cut(s) 180
GluI GCNGC 2 cut(s) 56, 110
HapII CCGG 2 cut(s) 133, 141
Hin1II CATG 1 cut(s) 85
HpaII CCGG 2 cut(s) 133, 141
Hpy166II GTNNAC 1 cut(s) 337
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 337
HpyCH4V TGCA 1 cut(s) 112
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 1 cut(s) 349
Lsp1109I GCAGC 2 cut(s) 67, 96
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 6, 212
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 2 cut(s) 245, 261
MluCI AATT 2 cut(s) 144, 245
MnlI CCTC 3 cut(s) 47, 85, 96
MseI TTAA 1 cut(s) 15
MspI CCGG 2 cut(s) 133, 141
MspR9I CCNGG 2 cut(s) 134, 141
NciI CCSGG 2 cut(s) 134, 141
NdeII GATC 1 cut(s) 349
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 2 cut(s) 138, 279
NmuCI GTSAC 1 cut(s) 6
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 2 cut(s) 57, 111
PspEI GGTNACC 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 138, 279
PstI CTGCAG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 56, 110
Sau3AI GATC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 134, 141
SetI ASST 4 cut(s) 13, 28, 60, 221
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 144, 245
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 132, 139
StyI CCWWGG 2 cut(s) 315, 362
TasI AATT 2 cut(s) 144, 245
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 2 cut(s) 55, 109
Tsp45I GTSAC 1 cut(s) 6
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.