Rh3DG292000

Domain of unknown function (DUF3475)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000458
Physical Location & Seq
Reverse (-)
30230224 .. 30230514
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG292000.1

Sequence Viewer

Length: 291 bp
ATGCTAACAACTGACGACCAGGAGATGCTGCAGGAAGTCAGTAAGGGAAGCCGGGTTCCCGGAATTAGTAAAAGTCAGGACTATGACAACGCAAAATCTAGTTTGGGAAACCAGAGCAGATTGAACAAGAGTAACAGCTATACATCTGGGGAAGAAACCAAGAAATTGTTGCCTTTCAGTAGGCTCTCTTCTGGGGTTCCTGTCTTTAATTTTGGTATGGATAAGGAAAAAGCCTTGGATGTCATAGATAGAGTGGACACACAGAGAGATCATCATCATCCAAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3475 DUF668

Protein Analysis

96

Amino Acids

10.81

Weight (kDa)

6.28

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 18
AloI GAACNNNNNNTCC 2 cut(s) 39, 71
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 28
AsuC2I CCSGG 2 cut(s) 53, 60
BarI GAAGNNNNNNTAC 2 cut(s) 172, 204
BbvI GCAGC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 2 cut(s) 53, 60
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 3 cut(s) 20, 53, 60
BmiI GGNNCC 2 cut(s) 57, 198
BmrFI CCNGG 3 cut(s) 20, 53, 60
BmsI GCATC 1 cut(s) 15
BpuMI CCSGG 2 cut(s) 53, 60
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 234, 281
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 234, 281
BseGI GGATG 2 cut(s) 244, 277
BseJI GATNNNNATC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 15
BsiSI CCGG 2 cut(s) 52, 60
Bsp143I GATC 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 57, 198
BspMAI CTGCAG 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 234, 281
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 2 cut(s) 234, 281
Bst2UI CCWGG 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 193
BstF5I GGATG 2 cut(s) 244, 277
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 3 cut(s) 18, 51, 58
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 244, 277
CviJI RGCY 4 cut(s) 51, 138, 184, 233
CviKI_1 RGCY 4 cut(s) 51, 138, 184, 233
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 234, 281
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 234, 281
ErhI CCWWGG 2 cut(s) 234, 281
FaiI YATR 4 cut(s) 84, 141, 218, 245
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 251, 264
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 1 cut(s) 99
GluI GCNGC 1 cut(s) 29
HapII CCGG 2 cut(s) 52, 60
HpaII CCGG 2 cut(s) 52, 60
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 268
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 131
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 164, 180
MluCI AATT 3 cut(s) 63, 164, 208
MseI TTAA 1 cut(s) 207
MspI CCGG 2 cut(s) 52, 60
MspR9I CCNGG 3 cut(s) 20, 53, 60
MvaI CCWGG 1 cut(s) 20
NciI CCSGG 2 cut(s) 53, 60
NdeII GATC 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 57, 198
PfoI TCCNGGA 1 cut(s) 58
PkrI GCNGC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 57, 198
PstI CTGCAG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 268
ScrFI CCNGG 3 cut(s) 20, 53, 60
SetI ASST 1 cut(s) 140
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 29
Sse9I AATT 3 cut(s) 63, 164, 208
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 18, 51, 58
StyI CCWWGG 2 cut(s) 234, 281
TasI AATT 3 cut(s) 63, 164, 208
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 1 cut(s) 28
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.